Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8500775.1

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2457

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8500775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1039 bp

gttctttcctgagaaggccacagctctagcaactgatattataaatgaactggttcaggagctgaaggtcaagccttgtcctgtggtctttgcttctttctctggtggtccaaaagcttgtatgtaccaagttcttcagataatcgagggaatttgtgaatcaaaactgaatctggatgattgccgactggttagagactgtatatcaggccatatatatgattccagcccagtggattttactagtgatctgggtactaaatttgttcttcacccaactgtcctgaaaatgtcccatccaccaagagtagcatcatgggtggcacatggcattgcttctggtcttgatgccctcttcctcaacaggtttgagtcacagcgtgctgagtattggcagactctctactccactgttggtatgaaggccccgtacctcattttatgctcagagaatgatgatcttgctccctatcaagttatctgtaattttgctgaacggttacgagaacttggggctgatgtaaaactagtaaaatggaagggctctccgcacgtaggtcattataggcattatccagttgattataaggctgctgtaactgagctccttggtaaagctgctggagtctattcccagagaattagacaaagggaaggagaaagcttgtgtgtgcaggcagggcacgacgacgttgttgagccaatcaatagccttaggaaagctgcagcagcctcaaatgggttccgaggagtgatgttggcatccagtgatgacttgttgcccacctcaacagaatattacggagttgggtctgtgcaagatgaaggtttaattcacctgtctgacccaccaacgccaaccatgaatgcccatggagttctcggtcaggttcttttcgacatctgtgttccaaaaaacattgagaattgggatataaagtcatcgagttctttgaatgggaatggccgctcttttagttttagaagaaggcaagcccctttaaacccaatcaagtgcatacgtcgctccagactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

345

Amino Acids

38.16

Weight (kDa)

7.23

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	42, 586
AccBSI	CCGCTC	1 cut(s)	970
AciI	CCGC	2 cut(s)	549, 968
AcoI	YGGCCR	1 cut(s)	965
AcsI	RAATTY	2 cut(s)	151, 261
AcuI	CTGAAG	2 cut(s)	84, 120
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	3 cut(s)	126, 257, 432
AfiI	CCNNNNNNNGG	2 cut(s)	555, 739
AgsI	TTSAA	1 cut(s)	956
AhlI	ACTAGT	2 cut(s)	243, 527
AluBI	AGCT	7 cut(s)	24, 62, 117, 605, 618, 664, 723
AluI	AGCT	7 cut(s)	24, 62, 117, 605, 618, 664, 723
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	16, 209, 424, 965
ApeKI	GCWGC	5 cut(s)	591, 618, 723, 726, 729
ApoI	RAATTY	2 cut(s)	151, 261
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	108, 425
AsuHPI	GGTGA	2 cut(s)	264, 828
AvaII	GGWCC	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	685
BanII	GRGCYC	2 cut(s)	546, 607
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	5 cut(s)	578, 605, 710, 738, 741
BccI	CCATC	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	190
BcuI	ACTAGT	2 cut(s)	243, 527
BfaI	CTAG	3 cut(s)	27, 244, 528
BfmI	CTRYAG	1 cut(s)	724
BisI	GCNGC	6 cut(s)	592, 619, 724, 727, 730, 968
BlsI	GCNGC	6 cut(s)	593, 620, 725, 728, 731, 969
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	108, 425
BmiI	GGNNCC	2 cut(s)	427, 744
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	321, 338, 771
BmuI	ACTGGG	1 cut(s)	225
BpmI	CTGGAG	2 cut(s)	643, 1013
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	608, 746, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	555, 739
Bse1I	ACTGG	5 cut(s)	55, 193, 231, 576, 766
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	608, 746, 872
BseGI	GGATG	3 cut(s)	182, 296, 762
BseLI	CCNNNNNNNGG	2 cut(s)	555, 739
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	376, 460, 592
BseNI	ACTGG	5 cut(s)	55, 193, 231, 576, 766
BseRI	GAGGAG	1 cut(s)	763
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	5 cut(s)	578, 605, 710, 738, 741
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	18, 211, 426, 967
BsiHKAI	GWGCWC	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	555, 739
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	872
BsnI	GGCC	4 cut(s)	18, 211, 426, 967
Bsp1286I	GDGCHC	3 cut(s)	546, 607, 685
Bsp143I	GATC	2 cut(s)	248, 458
Bsp19I	CCATGG	1 cut(s)	872
BspACI	CCGC	2 cut(s)	549, 968
BspANI	GGCC	4 cut(s)	18, 211, 426, 967
BspCNI	CTCAG	3 cut(s)	377, 459, 593
BspLI	GGNNCC	2 cut(s)	427, 744
BspMAI	CTGCAG	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	5 cut(s)	55, 193, 231, 576, 766
BssECI	CCNNGG	3 cut(s)	608, 746, 872
BssMI	GATC	2 cut(s)	248, 458
BssT1I	CCWWGG	2 cut(s)	608, 872
Bst4CI	ACNGT	4 cut(s)	201, 281, 413, 499
Bst6I	CTCTTC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	382, 676, 994
BstDEI	CTNAG	5 cut(s)	10, 385, 446, 601, 714
BstDSI	CCRYGG	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	182, 296, 762
BstKTI	GATC	2 cut(s)	251, 461
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	248, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 729, 1024
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	5 cut(s)	578, 605, 710, 738, 741
BstXI	CCANNNNNNTGG	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	4 cut(s)	18, 211, 426, 967
BtgI	CCRYGG	1 cut(s)	872
BtsCI	GGATG	3 cut(s)	182, 296, 762
BtsIMutI	CAGTG	3 cut(s)	238, 409, 773
Cac8I	GCNNGC	3 cut(s)	382, 676, 994
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	108, 425
Csp6I	GTAC	3 cut(s)	125, 256, 431
CviAII	CATG	4 cut(s)	316, 327, 863, 873
CviQI	GTAC	3 cut(s)	125, 256, 431
DdeI	CTNAG	5 cut(s)	10, 385, 446, 601, 714
DpnI	GATC	2 cut(s)	250, 460
DpnII	GATC	2 cut(s)	248, 458
DraI	TTTAAA	1 cut(s)	1003
DraIII	CACNNNGTG	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	965
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	608, 872
Eco24I	GRGCYC	2 cut(s)	546, 607
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	84, 120
Eco81I	CCTNAGG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	608, 872
EcoT38I	GRGCYC	2 cut(s)	546, 607
ErhI	CCWWGG	2 cut(s)	608, 872
FaeI	CATG	4 cut(s)	319, 330, 866, 876
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	315, 326, 862, 872
Fnu4HI	GCNGC	6 cut(s)	592, 619, 724, 727, 730, 968
FokI	GGATG	3 cut(s)	189, 283, 749
FriOI	GRGCYC	2 cut(s)	546, 607
Fsp4HI	GCNGC	6 cut(s)	592, 619, 724, 727, 730, 968
FspBI	CTAG	3 cut(s)	27, 244, 528
GluI	GCNGC	6 cut(s)	592, 619, 724, 727, 730, 968
GsuI	CTGGAG	2 cut(s)	643, 1013
HaeIII	GGCC	4 cut(s)	18, 211, 426, 967
Hin1II	CATG	4 cut(s)	319, 330, 866, 876
HindIII	AAGCTT	2 cut(s)	115, 662
HinfI	GANTC	6 cut(s)	159, 170, 222, 372, 398, 625
HphI	GGTGA	2 cut(s)	264, 828
Hpy188I	TCNGA	4 cut(s)	139, 449, 747, 845
Hpy188III	TCNNGA	6 cut(s)	9, 57, 174, 284, 345, 1030
Hpy99I	CGWCG	3 cut(s)	690, 693, 1027
HpyAV	CCTTC	7 cut(s)	8, 59, 416, 533, 648, 819, 982
HpyCH4III	ACNGT	4 cut(s)	201, 281, 413, 499
HpyCH4IV	ACGT	3 cut(s)	553, 691, 1022
HpyCH4V	TGCA	4 cut(s)	674, 726, 818, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 729, 1024
HpyF3I	CTNAG	5 cut(s)	10, 385, 446, 601, 714
HpySE526I	ACGT	3 cut(s)	553, 691, 1022
Hsp92II	CATG	4 cut(s)	319, 330, 866, 876
Kzo9I	GATC	2 cut(s)	248, 458
LmnI	GCTCC	4 cut(s)	59, 470, 610, 1032
Lsp1109I	GCAGC	5 cut(s)	578, 605, 710, 738, 741
LweI	GCATC	3 cut(s)	321, 338, 771
MaeI	CTAG	3 cut(s)	27, 244, 528
MaeII	ACGT	3 cut(s)	553, 691, 1022
MaeIII	GTNAC	3 cut(s)	373, 499, 596
MalI	GATC	2 cut(s)	250, 460
MbiI	CCGCTC	1 cut(s)	970
MboI	GATC	2 cut(s)	248, 458
MboII	GAAGA	4 cut(s)	126, 261, 347, 997
MhlI	GDGCHC	3 cut(s)	546, 607, 685
MluCI	AATT	6 cut(s)	151, 261, 485, 640, 832, 926
MlyI	GAGTC	3 cut(s)	381, 392, 634
MnlI	CCTC	7 cut(s)	140, 363, 369, 444, 741, 743, 797
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	2 cut(s)	831, 1002
MslI	CAYNNNNRTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	872
MwoI	GCNNNNNNNGC	3 cut(s)	680, 729, 1024
NcoI	CCATGG	1 cut(s)	872
NdeII	GATC	2 cut(s)	248, 458
NlaIII	CATG	4 cut(s)	319, 330, 866, 876
NlaIV	GGNNCC	2 cut(s)	427, 744
NmuCI	GTSAC	1 cut(s)	373
PctI	GAATGC	1 cut(s)	872
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	159, 170, 222
PkrI	GCNGC	6 cut(s)	593, 620, 725, 728, 731, 969
PleI	GAGTC	3 cut(s)	380, 392, 633
PpsI	GAGTC	3 cut(s)	380, 392, 633
Ppu21I	YACGTR	1 cut(s)	554
PsiI	TTATAA	2 cut(s)	42, 586
Psp124BI	GAGCTC	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	427, 744
PspPI	GGNCC	2 cut(s)	108, 425
PstI	CTGCAG	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	126, 257, 432
RsaNI	GTAC	3 cut(s)	125, 256, 431
RseI	CAYNNNNRTG	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	831, 1002
SatI	GCNGC	6 cut(s)	592, 619, 724, 727, 730, 968
Sau3AI	GATC	2 cut(s)	248, 458
Sau96I	GGNCC	2 cut(s)	108, 425
SchI	GAGTC	3 cut(s)	381, 392, 634
SduI	GDGCHC	3 cut(s)	546, 607, 685
SfaNI	GCATC	3 cut(s)	321, 338, 771
SfcI	CTRYAG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	217
SpeI	ACTAGT	2 cut(s)	243, 527
Sse9I	AATT	6 cut(s)	151, 261, 485, 640, 832, 926
SsiI	CCGC	2 cut(s)	549, 968
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	3 cut(s)	27, 244, 528
SstI	GAGCTC	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	608, 872
TaaI	ACNGT	4 cut(s)	201, 281, 413, 499
TaiI	ACGT	3 cut(s)	556, 694, 1025
TaqI	TCGA	3 cut(s)	145, 898, 945
TaqII	GACCGA	1 cut(s)	873
TasI	AATT	6 cut(s)	151, 261, 485, 640, 832, 926
TauI	GCSGC	1 cut(s)	970
TfiI	GAWTC	3 cut(s)	159, 170, 222
Tru1I	TTAA	2 cut(s)	831, 1002
Tru9I	TTAA	2 cut(s)	831, 1002
TscAI	CASTG	3 cut(s)	238, 416, 773
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	5 cut(s)	591, 618, 723, 726, 729
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	4 cut(s)	61, 435, 838, 879
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	3 cut(s)	238, 416, 773
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	2 cut(s)	151, 261
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	3 cut(s)	27, 244, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.