Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008692

Physical Location & Seq

Genomic Coordinates Reverse (-)

6769780 .. 6772456

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTGGGGGCTCGGGGGTCAGTGCTATTGGGGGAGGAAGGAGCGGCGGAGCTATGGGATTGAAGGGATAGTGGTGGTGTTTGCGTGGATGTCGAGCCAGGAGAGGCAGCTGAAGAGCTTCGTGGAGCTTTACTCGTCTCTGGGTTGGAACTCACTCGTCTGCCACTCCCAATTTCTCAATATGGGTGGGTTTTTGCGATATGCATTTGTAGAACTCGAGTTATTATATTTGGATCTGTCTGTTATTGTGGCTGCAATCATTCAATTAAAATTGCATGATTTTGGTTTTGGACTAATGTTTGATATACATGATTTCTCCAGGTTCTTCCCCGAAAAGGCTACAACTATAGCGACGGATATTCTAAATGAAATTGTTGAGGATGATTGCCGATTAGTTAAAGACTGTATTGCTGGCCACATCTATGATTCGAGTCCAGTGGACTTTACTAGTGTTCTGGGTGCTAAATTTGTTCTTCACCCAAGTGTCCTGAAAATATCCAAGCCACCAAGATTTGCATCCTGGATGGCGCATAGCATTGCATCTGGGCTCGATGCGCTCTTTCTCAACAGGTTTGAGTCACAGCGTGCTGAGTACTGGCAGACTCTTTACTCCACCACTGGCATGCAGGCCCCGTATCTCATCTTATGCTCGGAGAATGACGATCTCGCTCCCTATCAAGTTATCTATAATTTTTCGCAGCGCTTACGAGAACTTGGGGCTGATGTTAAACTAGTAAAATGGAATGACTCTCCTCACGTAGGTCACTACAGGCGTTATCCAATTGATTACAAAGTTGCTGTAAACGAGCTCCTTGGTAAAGCAGCGGGAGTTTATTCTCAAAGAATTAGACGGCTGGAAGGAGAAACATTGGGCATGCAGGCAACACAAGATGAGATCATCGACAATGAACCGATGAGTAGCGTTAGAAAAGCTGCGGGAGGCTCAAATGGGTTTCGAGGAGTCACTCTGGCCGGAAGACACGATCGATCACTTCTTCACCACGCCCGTCTCAATGGAGTACGAGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

344

Amino Acids

38.89

Weight (kDa)

7.17

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44250 AT5G44250
fragaria_vesca	FvH4_2g34600 FvH4_2g34600 FvH4_2g34600
malus_domestica	MD08G1103200.v1.1 MD15G1084500.v1.1
prunus_persica	Prupe.1G438200_v2.0.a1 Prupe.1G438200_v2.0.a1
pyrus_communis	pycom08g08460 pycom15g07980
rosa_chinensis	RchiOBHm_Chr6g0307551 RchiOBHm_Chr6g0307701
rosa_laevigata	RLG00000010707
rosa_multiflora	Rmu_co8500775.1_g000001
rosa_rugosa	Rorug06G0359600 Rorug06G0359700 Rorug06G0359800
rosa_samantha	Rh6AG469100 Rh6BG479700 Rh6CG485300 Rh6DG471900
rosa_wichuraiana	Rw6G040960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	4 cut(s)	43, 46, 824, 935
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	2 cut(s)	412, 969
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	593, 1020
AfeI	AGCGCT	1 cut(s)	701
AfiI	CCNNNNNNNGG	2 cut(s)	334, 758
AgsI	TTSAA	2 cut(s)	62, 263
AhlI	ACTAGT	2 cut(s)	446, 730
AjnI	CCWGG	3 cut(s)	96, 317, 518
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	6 cut(s)	51, 109, 117, 127, 808, 932
AluI	AGCT	6 cut(s)	51, 109, 117, 127, 808, 932
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	2 cut(s)	141, 1013
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	2 cut(s)	11, 215
Aor51HI	AGCGCT	1 cut(s)	701
AoxI	GGCC	3 cut(s)	412, 627, 969
ApeKI	GCWGC	5 cut(s)	106, 251, 697, 821, 932
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	3 cut(s)	529, 556, 702
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	467, 989
AvaI	CYCGRG	2 cut(s)	11, 215
BalI	TGGCCA	1 cut(s)	414
BanII	GRGCYC	3 cut(s)	12, 549, 810
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	118, 238, 709, 833, 919
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	3 cut(s)	98, 319, 520
BcoDI	GTCTC	2 cut(s)	141, 1013
BcuI	ACTAGT	2 cut(s)	446, 730
BfaI	CTAG	2 cut(s)	447, 731
BfmI	CTRYAG	2 cut(s)	345, 766
BfoI	RGCGCY	1 cut(s)	703
BisI	GCNGC	6 cut(s)	44, 107, 252, 698, 822, 933
BlsI	GCNGC	6 cut(s)	45, 108, 253, 699, 823, 934
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	3 cut(s)	98, 319, 520
BmeT110I	CYCGRG	2 cut(s)	11, 215
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	3 cut(s)	98, 319, 520
BmsI	GCATC	3 cut(s)	524, 541, 548
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	985
BsaAI	YACGTR	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 758
Bse1I	ACTGG	3 cut(s)	434, 599, 622
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	514
BseBI	CCWGG	3 cut(s)	98, 319, 520
BseCI	ATCGAT	1 cut(s)	985
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	4 cut(s)	93, 385, 515, 528
BseJI	GATNNNNATC	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	334, 758
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	3 cut(s)	434, 599, 622
BseRI	GAGGAG	2 cut(s)	741, 972
BseXI	GCAGC	5 cut(s)	118, 238, 709, 833, 919
Bsh1285I	CGRYCG	1 cut(s)	985
BshFI	GGCC	3 cut(s)	414, 629, 971
BshVI	ATCGAT	1 cut(s)	985
BsiEI	CGRYCG	1 cut(s)	985
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	2 cut(s)	11, 215
BsiSI	CCGG	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	334, 758
BsmAI	GTCTC	2 cut(s)	141, 1013
BsmBI	CGTCTC	2 cut(s)	141, 1013
BsnI	GGCC	3 cut(s)	414, 629, 971
BsoBI	CYCGRG	2 cut(s)	11, 215
Bsp1286I	GDGCHC	3 cut(s)	12, 549, 810
Bsp143I	GATC	5 cut(s)	232, 661, 894, 982, 986
BspACI	CCGC	4 cut(s)	43, 46, 824, 935
BspANI	GGCC	3 cut(s)	414, 629, 971
BspCNI	CTCAG	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	985
BspLI	GGNNCC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	434, 599, 622
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	5 cut(s)	232, 661, 894, 982, 986
BssT1I	CCWWGG	1 cut(s)	811
Bst2UI	CCWGG	3 cut(s)	98, 319, 520
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	6 cut(s)	412, 585, 623, 627, 875, 879
BstDEI	CTNAG	1 cut(s)	588
BstENI	CCTNNNNNAGG	1 cut(s)	756
BstF5I	GGATG	4 cut(s)	93, 385, 515, 528
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	3 cut(s)	529, 556, 702
BstKTI	GATC	5 cut(s)	235, 664, 897, 985, 989
BstMAI	GTCTC	2 cut(s)	141, 1013
BstMBI	GATC	5 cut(s)	232, 661, 894, 982, 986
BstMCI	CGRYCG	1 cut(s)	985
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	3 cut(s)	98, 319, 520
BstNSI	RCATGY	2 cut(s)	625, 877
BstSCI	CCNGG	3 cut(s)	96, 317, 518
BstSFI	CTRYAG	2 cut(s)	345, 766
BstV1I	GCAGC	5 cut(s)	118, 238, 709, 833, 919
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	985
BsuRI	GGCC	3 cut(s)	414, 629, 971
BsuTUI	ATCGAT	1 cut(s)	985
BtsCI	GGATG	4 cut(s)	93, 385, 515, 528
BtsIMutI	CAGTG	3 cut(s)	26, 441, 615
Cac8I	GCNNGC	6 cut(s)	412, 585, 623, 627, 875, 879
CfoI	GCGC	3 cut(s)	529, 556, 702
Cfr13I	GGNCC	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	985
Csp6I	GTAC	2 cut(s)	592, 1019
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	4 cut(s)	275, 308, 622, 874
CviQI	GTAC	2 cut(s)	592, 1019
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	5 cut(s)	234, 663, 896, 984, 988
DpnII	GATC	5 cut(s)	232, 661, 894, 982, 986
DraIII	CACNNNGTG	1 cut(s)	584
EaeI	YGGCCR	2 cut(s)	412, 969
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	811
Eco24I	GRGCYC	3 cut(s)	12, 549, 810
Eco47III	AGCGCT	1 cut(s)	701
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	11, 215
EcoICRI	GAGCTC	1 cut(s)	808
EcoNI	CCTNNNNNAGG	1 cut(s)	756
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	3 cut(s)	96, 317, 518
EcoT14I	CCWWGG	1 cut(s)	811
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	3 cut(s)	12, 549, 810
ErhI	CCWWGG	1 cut(s)	811
Esp3I	CGTCTC	2 cut(s)	141, 1013
FaeI	CATG	4 cut(s)	278, 311, 625, 877
FatI	CATG	4 cut(s)	274, 307, 621, 873
FauI	CCCGC	2 cut(s)	817, 928
Fnu4HI	GCNGC	6 cut(s)	44, 107, 252, 698, 822, 933
FokI	GGATG	4 cut(s)	100, 392, 502, 535
FriOI	GRGCYC	3 cut(s)	12, 549, 810
Fsp4HI	GCNGC	6 cut(s)	44, 107, 252, 698, 822, 933
FspBI	CTAG	2 cut(s)	447, 731
GlaI	GCGC	3 cut(s)	528, 555, 701
GluI	GCNGC	6 cut(s)	44, 107, 252, 698, 822, 933
GsuI	CTGGAG	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	3 cut(s)	414, 629, 971
HapII	CCGG	1 cut(s)	972
HhaI	GCGC	3 cut(s)	529, 556, 702
Hin1II	CATG	4 cut(s)	278, 311, 625, 877
Hin6I	GCGC	3 cut(s)	527, 554, 700
HinP1I	GCGC	3 cut(s)	527, 554, 700
HinfI	GANTC	6 cut(s)	425, 430, 575, 601, 746, 960
HpaII	CCGG	1 cut(s)	972
HphI	GGTGA	2 cut(s)	467, 989
Hpy166II	GTNNAC	2 cut(s)	439, 802
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	2 cut(s)	439, 802
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	31, 56, 851
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	7 cut(s)	203, 254, 274, 515, 539, 625, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	278, 311, 625, 877
HspAI	GCGC	3 cut(s)	527, 554, 700
Kzo9I	GATC	5 cut(s)	232, 661, 894, 982, 986
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	5 cut(s)	40, 48, 124, 673, 813
Lsp1109I	GCAGC	5 cut(s)	118, 238, 709, 833, 919
LweI	GCATC	3 cut(s)	524, 541, 548
MaeI	CTAG	2 cut(s)	447, 731
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	3 cut(s)	576, 761, 961
MalI	GATC	5 cut(s)	234, 663, 896, 984, 988
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	5 cut(s)	232, 661, 894, 982, 986
MboII	GAAGA	5 cut(s)	124, 316, 464, 986, 987
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	12, 549, 810
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	8 cut(s)	170, 263, 269, 369, 464, 688, 780, 843
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	5 cut(s)	439, 584, 595, 740, 969
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	8 cut(s)	27, 96, 370, 762, 932, 950, 1016, 1020
Mox20I	TGGCCA	1 cut(s)	414
Mph1103I	ATGCAT	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	3 cut(s)	266, 396, 726
MslI	CAYNNNNRTG	3 cut(s)	420, 480, 620
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	109, 824
MspI	CCGG	1 cut(s)	972
MspR9I	CCNGG	3 cut(s)	98, 319, 520
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	3 cut(s)	98, 319, 520
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	5 cut(s)	232, 661, 894, 982, 986
NlaIII	CATG	4 cut(s)	278, 311, 625, 877
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	3 cut(s)	576, 761, 961
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	2 cut(s)	625, 877
OliI	CACNNNNGTG	1 cut(s)	480
PaeI	GCATGC	2 cut(s)	625, 877
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	518
PkrI	GCNGC	6 cut(s)	45, 108, 253, 699, 823, 934
Ple19I	CGATCG	1 cut(s)	985
PleI	GAGTC	5 cut(s)	438, 583, 595, 740, 968
PpsI	GAGTC	5 cut(s)	438, 583, 595, 740, 968
Ppu21I	YACGTR	1 cut(s)	757
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	3 cut(s)	96, 317, 518
PspGI	CCWGG	3 cut(s)	96, 317, 518
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	628
PspXI	VCTCGAGB	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	985
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	593, 1020
RsaNI	GTAC	2 cut(s)	592, 1019
RseI	CAYNNNNRTG	3 cut(s)	420, 480, 620
SacI	GAGCTC	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	266, 396, 726
SatI	GCNGC	6 cut(s)	44, 107, 252, 698, 822, 933
Sau3AI	GATC	5 cut(s)	232, 661, 894, 982, 986
Sau96I	GGNCC	1 cut(s)	628
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	5 cut(s)	439, 584, 595, 740, 969
ScrFI	CCNGG	3 cut(s)	98, 319, 520
SduI	GDGCHC	3 cut(s)	12, 549, 810
SfaNI	GCATC	3 cut(s)	524, 541, 548
SfcI	CTRYAG	2 cut(s)	345, 766
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	3 cut(s)	420, 480, 620
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	2 cut(s)	446, 730
SphI	GCATGC	2 cut(s)	625, 877
Sse9I	AATT	8 cut(s)	170, 263, 269, 369, 464, 688, 780, 843
SsiI	CCGC	4 cut(s)	43, 46, 824, 935
SspMI	CTAG	2 cut(s)	447, 731
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	3 cut(s)	96, 317, 518
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	7 cut(s)	92, 216, 428, 549, 900, 955, 985
TasI	AATT	8 cut(s)	170, 263, 269, 369, 464, 688, 780, 843
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	266, 396, 726
Tru9I	TTAA	3 cut(s)	266, 396, 726
TscAI	CASTG	3 cut(s)	26, 441, 622
TseFI	GTSAC	3 cut(s)	576, 761, 961
TseI	GCWGC	5 cut(s)	106, 251, 697, 821, 932
Tsp45I	GTSAC	3 cut(s)	576, 761, 961
TspDTI	ATGAA	2 cut(s)	381, 921
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	26, 441, 622
XagI	CCTNNNNNAGG	1 cut(s)	756
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	625, 877
XhoI	CTCGAG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	447, 731
ZrmI	AGTACT	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.