Prupe.1G438100_v2.0.a1

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012936
Physical Location & Seq
Reverse (-)
37294604 .. 37296427
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G438100.1

Sequence Viewer

Length: 1023 bp
ATGAAAATACTGTTGACCGGCGCCTCCGGCTACCTAGGAGGCAGATTGTGCCACGAGCTGCTGAAACAAGGCTATTCTGTTCGCGCCTTGGTCCGCCCAACCAGCGACCTCTCCTCCCTGCCTCCACCGTCACCAACCGGTAACGGTGGCCTCGAACTCGTCCACGGCGACGTCACCGACTACAACTCCCTCCTCTCCGCCTTCTCCGGCTGCGACGTCGTTTTCCACGCAGCCGCCGTGGTTGAGCCCTGGCTTCCCGACCCCTCCAAGTTCTTCTCCGTCAACGTCGGGGGTTTGAAGAACGTGCTGCGAGCGGTTCGAGAGACAAAGACCGTACAGAAGGTCATCTACACGTCGTCGTTTTTCGCGCTCGGACCGACCGATGGCCACGTCGCCGACGAGGCTCAGATCCATCACGAGAAGTTCTTCTGTACGGAGTACGAGAAATCGAAAGCTGCCGCCGATAAAATCGCGCTACAGGCCGCGCAGCAAGAGGAGCTGCCGTTGGTGCTGCTTTATCCCGGAGTAATCTACGGGCCCGGAAAGATCACCGCTGGAAACGTCGTCGCTCGGATGATCGTCGAGCGGTTCAACGGCCGATTGCCTGGATATATAGGGTCCGGTAACGATAGGTATTCGTTTAGCCATGTCGATGATGTTGTGGAGGGCCATATCAGAGCTATGGAAAAAGGTCGAACAGGTGAGAGGTATCTGCTAACAGGTGAAAACGCATCGTTTAAGCACGTTTTCGATGTAGCAGCTGTGATCACTCAGACGCAGAGGCCTAAATTTGGGATCCCATTGTGGTTGATTGAGGTGTACGGATGGGCGTCTGTTCTTTTCTCTCGAATTACAGGGAAGCTTCCTCTGATTAGTCCTCCGACTGTTTATGTTTTGAGACATCAATGGGCATATTCATGTGACAAGGCCAAGCAGGAGCTGGATTATAGTCCCAGAGGATTGAAAGAAGGATTGGGGGAGGTGTTGCCTTGGCTCAAGAACTTGGGCTTGATCAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00909 ko01130 map00900 map00909 map01130
Pfam Domains
Protein Families
Epimerase

Protein Analysis

341

Amino Acids

37.36

Weight (kDa)

8.51

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33360 AT4G33360
fragaria_vesca FvH4_2g34590
malus_domestica MD08G1103100.v1.1
prunus_persica Prupe.1G438100_v2.0.a1
pyrus_communis pycom08g08450
rosa_chinensis RchiOBHm_Chr4g0409851 RchiOBHm_Chr5g0013111 RchiOBHm_Chr6g0307561 RchiOBHm_Chr6g0307711
rosa_laevigata RLG00000010706
rosa_multiflora Rmu_sc0000031.1_g000026
rosa_rugosa Rorug06G0359800
rosa_samantha Rh6AG469200 Rh6BG479800 Rh6CG485400 Rh6DG472000
rosa_wichuraiana Rw6G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 174, 219
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 2 cut(s) 314, 586
AccII CGCG 4 cut(s) 84, 368, 473, 485
AciI CCGC 8 cut(s) 94, 198, 234, 314, 459, 483, 552, 586
AclWI GGATC 3 cut(s) 403, 790, 803
AcoI YGGCCR 2 cut(s) 385, 595
AcsI RAATTY 1 cut(s) 788
AcyI GRCGYC 4 cut(s) 21, 171, 216, 830
AfaI GTAC 4 cut(s) 336, 433, 440, 821
AfiI CCNNNNNNNGG 2 cut(s) 383, 791
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 3 cut(s) 298, 592, 964
AjiI CACGTC 2 cut(s) 354, 391
AjnI CCWGG 2 cut(s) 248, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 7 cut(s) 58, 455, 499, 680, 761, 862, 940
AluI AGCT 7 cut(s) 58, 455, 499, 680, 761, 862, 940
Alw26I GTCTC 2 cut(s) 317, 892
AlwI GGATC 3 cut(s) 403, 790, 803
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 8 cut(s) 148, 385, 480, 536, 595, 667, 782, 927
ApaI GGGCCC 1 cut(s) 540
ApeKI GCWGC 9 cut(s) 58, 210, 230, 307, 455, 487, 499, 511, 758
ApoI RAATTY 1 cut(s) 788
AsiGI ACCGGT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 425
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 5 cut(s) 23, 86, 370, 475, 487
AspS9I GGNCC 6 cut(s) 91, 374, 536, 537, 618, 667
AsuC2I CCSGG 2 cut(s) 522, 540
AsuHPI GGTGA 5 cut(s) 123, 166, 541, 713, 734
AvaII GGWCC 3 cut(s) 91, 374, 618
AvrII CCTAGG 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 540
BalI TGGCCA 1 cut(s) 387
BamHI GGATCC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 249, 540
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BauI CACGAG 2 cut(s) 53, 416
BbvI GCAGC 9 cut(s) 45, 197, 242, 294, 442, 486, 498, 499, 770
BccI CCATC 3 cut(s) 377, 420, 819
BceAI ACGGC 4 cut(s) 181, 221, 487, 610
BciT130I CCWGG 2 cut(s) 250, 606
BclI TGATCA 2 cut(s) 765, 1011
BcnI CCSGG 2 cut(s) 522, 540
BcoDI GTCTC 2 cut(s) 317, 892
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 401
BlnI CCTAGG 1 cut(s) 34
Bme1390I CCNGG 4 cut(s) 250, 522, 540, 606
Bme18I GGWCC 3 cut(s) 91, 374, 618
BmgBI CACGTC 2 cut(s) 354, 391
BmgT120I GGNCC 6 cut(s) 91, 374, 536, 537, 618, 667
BmiI GGNNCC 4 cut(s) 22, 538, 619, 797
BmrFI CCNGG 4 cut(s) 250, 522, 540, 606
BmsI GCATC 1 cut(s) 740
BpuEI CTTGAG 1 cut(s) 980
BpuMI CCSGG 2 cut(s) 522, 540
BsaHI GRCGYC 4 cut(s) 21, 171, 216, 830
BsaJI CCNNGG 6 cut(s) 34, 87, 163, 237, 248, 989
BsaWI WCCGGW 2 cut(s) 137, 620
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 170, 200, 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 791
Bse118I RCCGGY 2 cut(s) 17, 137
BseBI CCWGG 2 cut(s) 250, 606
BseDI CCNNGG 6 cut(s) 34, 87, 163, 237, 248, 989
BseGI GGATG 2 cut(s) 579, 830
BseLI CCNNNNNNNGG 2 cut(s) 383, 791
BseMII CTCAG 2 cut(s) 419, 785
BseRI GAGGAG 3 cut(s) 103, 182, 509
BseSI GKGCMC 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 595
BseXI GCAGC 9 cut(s) 45, 197, 242, 294, 442, 486, 498, 499, 770
Bsh1236I CGCG 4 cut(s) 84, 368, 473, 485
Bsh1285I CGRYCG 2 cut(s) 381, 598
BshFI GGCC 8 cut(s) 150, 387, 482, 538, 597, 669, 784, 929
BshNI GGYRCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 137
BsiEI CGRYCG 2 cut(s) 381, 598
BsiSI CCGG 7 cut(s) 18, 27, 138, 207, 522, 540, 621
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 2 cut(s) 383, 791
BsmAI GTCTC 2 cut(s) 317, 892
BsmFI GGGAC 1 cut(s) 936
BsnI GGCC 8 cut(s) 150, 387, 482, 538, 597, 669, 784, 929
Bsp120I GGGCCC 1 cut(s) 536
Bsp1286I GDGCHC 2 cut(s) 249, 540
Bsp143I GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
BspACI CCGC 8 cut(s) 94, 198, 234, 314, 459, 483, 552, 586
BspANI GGCC 8 cut(s) 150, 387, 482, 538, 597, 669, 784, 929
BspCNI CTCAG 2 cut(s) 418, 784
BspFNI CGCG 4 cut(s) 84, 368, 473, 485
BspLI GGNNCC 4 cut(s) 22, 538, 619, 797
BspPI GGATC 3 cut(s) 403, 790, 803
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 2 cut(s) 314, 586
BsrFI RCCGGY 2 cut(s) 17, 137
BssAI RCCGGY 2 cut(s) 17, 137
BssECI CCNNGG 6 cut(s) 34, 87, 163, 237, 248, 989
BssMI GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
BssNI GRCGYC 4 cut(s) 21, 171, 216, 830
BssSI CACGAG 2 cut(s) 53, 416
BssT1I CCWWGG 3 cut(s) 34, 87, 989
Bst2BI CACGAG 2 cut(s) 53, 416
Bst2UI CCWGG 2 cut(s) 250, 606
Bst4CI ACNGT 5 cut(s) 12, 129, 146, 334, 886
BstACI GRCGYC 4 cut(s) 21, 171, 216, 830
BstAPI GCANNNNNTGC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 405, 771
BstDSI CCRYGG 2 cut(s) 163, 237
BstF5I GGATG 2 cut(s) 579, 830
BstFNI CGCG 4 cut(s) 84, 368, 473, 485
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 5 cut(s) 23, 86, 370, 475, 487
BstKTI GATC 6 cut(s) 411, 549, 579, 768, 798, 1014
BstMAI GTCTC 2 cut(s) 317, 892
BstMBI GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
BstMCI CGRYCG 2 cut(s) 381, 598
BstMWI GCNNNNNNNGC 7 cut(s) 27, 48, 102, 401, 479, 496, 508
BstNI CCWGG 2 cut(s) 250, 606
BstSCI CCNGG 4 cut(s) 248, 520, 538, 604
BstSFI CTRYAG 1 cut(s) 476
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 4 cut(s) 84, 368, 473, 485
BstV1I GCAGC 9 cut(s) 45, 197, 242, 294, 442, 486, 498, 499, 770
BstX2I RGATCY 2 cut(s) 408, 795
BstYI RGATCY 2 cut(s) 408, 795
BstZI CGGCCG 1 cut(s) 595
BsuRI GGCC 8 cut(s) 150, 387, 482, 538, 597, 669, 784, 929
BtgI CCRYGG 2 cut(s) 163, 237
BtrI CACGTC 2 cut(s) 354, 391
BtsCI GGATG 2 cut(s) 579, 830
Cac8I GCNNGC 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 5 cut(s) 23, 86, 370, 475, 487
Cfr10I RCCGGY 2 cut(s) 17, 137
Cfr13I GGNCC 6 cut(s) 91, 374, 536, 537, 618, 667
CpoI CGGWCCG 1 cut(s) 374
CseI GACGC 2 cut(s) 784, 819
Csp6I GTAC 4 cut(s) 335, 432, 439, 820
CspAI ACCGGT 1 cut(s) 137
CspI CGGWCCG 1 cut(s) 374
CviAII CATG 2 cut(s) 647, 918
CviQI GTAC 4 cut(s) 335, 432, 439, 820
DdeI CTNAG 2 cut(s) 405, 771
DinI GGCGCC 1 cut(s) 22
DpnI GATC 6 cut(s) 410, 548, 578, 767, 797, 1013
DpnII GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
EaeI YGGCCR 2 cut(s) 385, 595
EagI CGGCCG 1 cut(s) 595
EciI GGCGGA 2 cut(s) 83, 187
EclXI CGGCCG 1 cut(s) 595
Eco130I CCWWGG 3 cut(s) 34, 87, 989
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 2 cut(s) 249, 540
Eco47I GGWCC 3 cut(s) 91, 374, 618
Eco52I CGGCCG 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 248, 604
EcoT14I CCWWGG 3 cut(s) 34, 87, 989
EcoT38I GRGCYC 2 cut(s) 249, 540
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 3 cut(s) 34, 87, 989
FaeI CATG 2 cut(s) 650, 921
FaiI YATR 9 cut(s) 612, 614, 648, 672, 683, 891, 913, 919, 948
FaqI GGGAC 1 cut(s) 936
FatI CATG 2 cut(s) 646, 917
FbaI TGATCA 2 cut(s) 765, 1011
FokI GGATG 2 cut(s) 586, 837
FriOI GRGCYC 2 cut(s) 249, 540
FspBI CTAG 1 cut(s) 35
GlaI GCGC 5 cut(s) 22, 85, 369, 474, 486
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 8 cut(s) 150, 387, 482, 538, 597, 669, 784, 929
HapII CCGG 7 cut(s) 18, 27, 138, 207, 522, 540, 621
HgaI GACGC 2 cut(s) 784, 819
HhaI GCGC 5 cut(s) 23, 86, 370, 475, 487
Hin1I GRCGYC 4 cut(s) 21, 171, 216, 830
Hin1II CATG 2 cut(s) 650, 921
Hin6I GCGC 5 cut(s) 21, 84, 368, 473, 485
HinP1I GCGC 5 cut(s) 21, 84, 368, 473, 485
HincII GTYRAC 2 cut(s) 15, 283
HindII GTYRAC 2 cut(s) 15, 283
HindIII AAGCTT 1 cut(s) 860
HpaII CCGG 7 cut(s) 18, 27, 138, 207, 522, 540, 621
HphI GGTGA 5 cut(s) 123, 166, 541, 713, 734
Hpy166II GTNNAC 4 cut(s) 15, 163, 283, 820
Hpy188I TCNGA 7 cut(s) 374, 408, 573, 677, 774, 870, 882
Hpy188III TCNNGA 5 cut(s) 257, 320, 416, 846, 997
Hpy8I GTNNAC 4 cut(s) 15, 163, 283, 820
HpyAV CCTTC 3 cut(s) 211, 334, 962
HpyCH4III ACNGT 5 cut(s) 12, 129, 146, 334, 886
HpyCH4IV ACGT 8 cut(s) 171, 216, 285, 303, 353, 390, 561, 744
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 48, 102, 401, 479, 496, 508
HpyF3I CTNAG 2 cut(s) 405, 771
HpySE526I ACGT 8 cut(s) 171, 216, 285, 303, 353, 390, 561, 744
Hsp92I GRCGYC 4 cut(s) 21, 171, 216, 830
Hsp92II CATG 2 cut(s) 650, 921
HspAI GCGC 5 cut(s) 21, 84, 368, 473, 485
KasI GGCGCC 1 cut(s) 20
Ksp22I TGATCA 2 cut(s) 765, 1011
Kzo9I GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
LmnI GCTCC 2 cut(s) 496, 937
Lsp1109I GCAGC 9 cut(s) 45, 197, 242, 294, 442, 486, 498, 499, 770
LweI GCATC 1 cut(s) 740
MaeI CTAG 1 cut(s) 35
MaeII ACGT 8 cut(s) 171, 216, 285, 303, 353, 390, 561, 744
MaeIII GTNAC 5 cut(s) 129, 140, 172, 623, 920
MalI GATC 6 cut(s) 410, 548, 578, 767, 797, 1013
MbiI CCGCTC 2 cut(s) 314, 586
MboI GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
MboII GAAGA 3 cut(s) 265, 310, 418
MflI RGATCY 2 cut(s) 408, 795
MhlI GDGCHC 2 cut(s) 249, 540
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 2 cut(s) 788, 849
MluNI TGGCCA 1 cut(s) 387
Mly113I GGCGCC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 905
Mox20I TGGCCA 1 cut(s) 387
MroXI GAANNNNTTC 1 cut(s) 425
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 2 cut(s) 651, 916
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 554, 761
MspI CCGG 7 cut(s) 18, 27, 138, 207, 522, 540, 621
MspR9I CCNGG 4 cut(s) 250, 522, 540, 606
MvaI CCWGG 2 cut(s) 250, 606
MvnI CGCG 4 cut(s) 84, 368, 473, 485
MwoI GCNNNNNNNGC 7 cut(s) 27, 48, 102, 401, 479, 496, 508
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 2 cut(s) 522, 540
NdeII GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
NlaIII CATG 2 cut(s) 650, 921
NlaIV GGNNCC 4 cut(s) 22, 538, 619, 797
NmuCI GTSAC 3 cut(s) 129, 172, 920
PceI AGGCCT 1 cut(s) 784
PcsI WCGNNNNNNNCGW 5 cut(s) 150, 165, 234, 378, 396
PdmI GAANNNNTTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 248, 604
PspGI CCWGG 2 cut(s) 248, 604
PspN4I GGNNCC 4 cut(s) 22, 538, 619, 797
PspOMI GGGCCC 1 cut(s) 536
PspPI GGNCC 6 cut(s) 91, 374, 536, 537, 618, 667
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 408, 795
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 4 cut(s) 336, 433, 440, 821
RsaNI GTAC 4 cut(s) 335, 432, 439, 820
RseI CAYNNNNRTG 2 cut(s) 651, 916
Rsr2I CGGWCCG 1 cut(s) 374
RsrII CGGWCCG 1 cut(s) 374
SaqAI TTAA 1 cut(s) 738
Sau3AI GATC 6 cut(s) 408, 546, 576, 765, 795, 1011
Sau96I GGNCC 6 cut(s) 91, 374, 536, 537, 618, 667
ScrFI CCNGG 4 cut(s) 250, 522, 540, 606
SduI GDGCHC 2 cut(s) 249, 540
SfaNI GCATC 1 cut(s) 740
SfcI CTRYAG 1 cut(s) 476
SfoI GGCGCC 1 cut(s) 22
SinI GGWCC 3 cut(s) 91, 374, 618
SmiMI CAYNNNNRTG 2 cut(s) 651, 916
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
Sse9I AATT 2 cut(s) 788, 849
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 8 cut(s) 94, 198, 234, 314, 459, 483, 552, 586
SspDI GGCGCC 1 cut(s) 20
SspI AATATT 1 cut(s) 1019
SspMI CTAG 1 cut(s) 35
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 4 cut(s) 248, 520, 538, 604
StyI CCWWGG 3 cut(s) 34, 87, 989
TaaI ACNGT 5 cut(s) 12, 129, 146, 334, 886
TaiI ACGT 8 cut(s) 174, 219, 288, 306, 356, 393, 564, 747
TaqI TCGA 8 cut(s) 153, 319, 449, 582, 651, 694, 750, 847
TaqII GACCGA 2 cut(s) 391, 395
TasI AATT 2 cut(s) 788, 849
TauI GCSGC 3 cut(s) 236, 461, 485
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TseFI GTSAC 3 cut(s) 129, 172, 920
TseI GCWGC 9 cut(s) 58, 210, 230, 307, 455, 487, 499, 511, 758
Tsp45I GTSAC 3 cut(s) 129, 172, 920
TspDTI ATGAA 2 cut(s) 17, 906
TspGWI ACGGA 3 cut(s) 268, 449, 837
VpaK11BI GGWCC 3 cut(s) 91, 374, 618
XapI RAATTY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XmaJI CCTAGG 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 1 cut(s) 35
ZraI GACGTC 2 cut(s) 172, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.