AT4G33550

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011865
Physical Location & Seq
Forward (+)
16134366 .. 16135134
769 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33550.1

Sequence Viewer

Length: 393 bp
ATGGGAAGTGGCATGATAAGGACATTGGTTATTCTAGCAATAGCTTTATTCATGATCGGTTCCGACAACGTCCACGTGGCAAAAGCCCAGGTCTGTGGAGCTAACTTGTCGGGACTGATGAACGAATGTCAACGCTACGTCAGCAACGCCGGACCAAATTCTCAGCCGCCGTCTCGGTCTTGTTGTGCTCTAATCCGTCCCATTGACGTACCTTGTGCTTGCCGCTACGTTTCAAGGGATGTTACGAACTATATTGATATGGACAAAGTGGTTTACGTTGCTCGTTCTTGCGGCAAGAAGATTCCCTCCGGTTATAAATGTGGAAGTAAGTATCTTTCTTGCTTTTCTTATTATAGTTTCGTAATTGTTAAGCATATAATAATTTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

9.14

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 107 7.6e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 107 3.3e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33550 AT4G33550
fragaria_vesca FvH4_3g29300 FvH4_7g02210
malus_domestica MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica Prupe.2G028300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0218541
rosa_laevigata RLG00000002359
rosa_multiflora Rmu_sc0001301.1_g000031
rosa_roxburghii Rroxscaffold_3G00240850
rosa_rugosa Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AciI CCGC 3 cut(s) 167, 223, 291
AcsI RAATTY 1 cut(s) 157
AcvI CACGTG 1 cut(s) 76
AfaI GTAC 1 cut(s) 210
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 44, 101
AluI AGCT 2 cut(s) 44, 101
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 152
AvaII GGWCC 1 cut(s) 152
BbrPI CACGTG 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 167, 223, 292
BlsI GCNGC 3 cut(s) 168, 224, 293
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 308
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 2 cut(s) 150, 309
BslFI GGGAC 2 cut(s) 126, 183
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 126, 183
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 3 cut(s) 167, 223, 291
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 13, 52
CviJI RGCY 4 cut(s) 44, 86, 101, 166
CviKI_1 RGCY 4 cut(s) 44, 86, 101, 166
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 16, 55
FaiI YATR 8 cut(s) 14, 53, 252, 260, 315, 354, 375, 377
FaqI GGGAC 2 cut(s) 126, 183
FatI CATG 2 cut(s) 12, 51
Fnu4HI GCNGC 3 cut(s) 167, 223, 292
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 167, 223, 292
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 167, 223, 292
HapII CCGG 2 cut(s) 150, 309
Hin1II CATG 2 cut(s) 16, 55
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 1 cut(s) 301
HpaII CCGG 2 cut(s) 150, 309
Hpy166II GTNNAC 3 cut(s) 73, 131, 274
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 52, 111
Hpy8I GTNNAC 3 cut(s) 73, 131, 274
HpyCH4IV ACGT 6 cut(s) 69, 75, 138, 207, 228, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 6 cut(s) 69, 75, 138, 207, 228, 276
Hsp92II CATG 2 cut(s) 16, 55
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 74, 101, 163, 322
MaeI CTAG 1 cut(s) 35
MaeII ACGT 6 cut(s) 69, 75, 138, 207, 228, 276
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 3 cut(s) 157, 363, 381
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 1 cut(s) 316
MseI TTAA 1 cut(s) 369
MspI CCGG 2 cut(s) 150, 309
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 16, 55
NlaIV GGNNCC 1 cut(s) 61
PagI TCATGA 1 cut(s) 51
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 168, 224, 293
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 76
PsiI TTATAA 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 68
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 167, 223, 292
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 190
SinI GGWCC 1 cut(s) 152
Sse9I AATT 3 cut(s) 157, 363, 381
SsiI CCGC 3 cut(s) 167, 223, 291
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 6 cut(s) 72, 78, 141, 210, 231, 279
TaqII GACCGA 1 cut(s) 165
TasI AATT 3 cut(s) 157, 363, 381
TauI GCSGC 3 cut(s) 169, 225, 294
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TspDTI ATGAA 2 cut(s) 40, 134
TspGWI ACGGA 1 cut(s) 185
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.