Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0011865

Physical Location & Seq

Genomic Coordinates Reverse (-)

137002 .. 137340

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgctcaatcttcctttcatggttttggctgcctttgcggtgataggaattcttctctccagtgaggtcgatgtggttctggggcaggcttgccaaggtgacatgcaaggtctgataacgcaatgtgcagcttatgttcggaagggtactccattgccgccaacgccgtctcaaggatgctgcacggcaatcagaacgttagacattccatgcgcgtgccagcacatgacgaagatggtcgagcagctggttgacatggacaaggtggttaaggtcgttagatcctgtggtatcgatattcctcgtggaatgaagtgtggaagtaagattccaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

112

Amino Acids

11.95

Weight (kDa)

8.14

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33550 AT4G33550
fragaria_vesca	FvH4_3g29300 FvH4_7g02210
malus_domestica	MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica	Prupe.2G028300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218541
rosa_laevigata	RLG00000002359
rosa_multiflora	Rmu_sc0001301.1_g000031
rosa_roxburghii	Rroxscaffold_3G00240850
rosa_rugosa	Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha	Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana	Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	38, 158
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	173
AluBI	AGCT	2 cut(s)	131, 247
AluI	AGCT	2 cut(s)	131, 247
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	276
ApeKI	GCWGC	4 cut(s)	29, 128, 180, 244
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	52, 110
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	16, 140, 167, 256
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	2 cut(s)	151, 201
BcoDI	GTCTC	1 cut(s)	174
BisI	GCNGC	5 cut(s)	30, 129, 158, 181, 245
BlsI	GCNGC	5 cut(s)	31, 130, 159, 182, 246
BmsI	GCATC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	2 cut(s)	128, 152
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	2 cut(s)	128, 152
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	16, 140, 167, 256
BsgI	GTGCAG	2 cut(s)	147, 166
Bsh1236I	CGCG	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	2 cut(s)	38, 158
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	215
BspPI	GGATC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	128, 152
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	303
BstC8I	GCNNGC	4 cut(s)	87, 91, 217, 221
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 163
BstNSI	RCATGY	1 cut(s)	106
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	4 cut(s)	16, 140, 167, 256
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	87, 91, 217, 221
CfoI	GCGC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	5 cut(s)	19, 103, 210, 226, 256
CviJI	RGCY	4 cut(s)	29, 89, 131, 247
CviKI_1	RGCY	4 cut(s)	29, 89, 131, 247
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	5 cut(s)	22, 106, 213, 229, 259
FaiI	YATR	6 cut(s)	20, 104, 135, 211, 227, 257
FatI	CATG	5 cut(s)	18, 102, 209, 225, 255
Fnu4HI	GCNGC	5 cut(s)	30, 129, 158, 181, 245
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	30, 129, 158, 181, 245
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	5 cut(s)	30, 129, 158, 181, 245
GsuI	CTGGAG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	5 cut(s)	22, 106, 213, 229, 259
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	2 cut(s)	52, 110
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	114, 141, 194
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	3 cut(s)	106, 128, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 163
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	5 cut(s)	22, 106, 213, 229, 259
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	65, 71, 73, 233, 233, 298
Lsp1109I	GCAGC	4 cut(s)	16, 140, 167, 256
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	2 cut(s)	44, 244
MflI	RGATCY	1 cut(s)	281
MluCI	AATT	2 cut(s)	48, 334
MnlI	CCTC	2 cut(s)	58, 312
MseI	TTAA	2 cut(s)	270, 337
MslI	CAYNNNNRTG	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	35, 163
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	5 cut(s)	22, 106, 213, 229, 259
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	5 cut(s)	31, 130, 159, 182, 246
Psp1406I	AACGTT	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	270, 337
SatI	GCNGC	5 cut(s)	30, 129, 158, 181, 245
Sau3AI	GATC	1 cut(s)	281
SetI	ASST	8 cut(s)	69, 100, 112, 133, 200, 249, 267, 276
SfaNI	GCATC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	48, 334
SsiI	CCGC	2 cut(s)	38, 158
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	69, 240, 294
TasI	AATT	2 cut(s)	48, 334
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	270, 337
Tru9I	TTAA	2 cut(s)	270, 337
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	4 cut(s)	29, 128, 180, 244
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	7, 326
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.