FvH4_7g02210
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011865
Physical Location & Seq
Reverse (-)
2581110 .. 2582007
898 bp
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UTR
Exon/CDS
Intron
FvH4_7g02210.t1

Sequence Viewer

Length: 360 bp
ATGGAAATGCTCAATCTTCGTTTCATAGCTTTAGCTGCTGTTGCTGTGTTTGGAATTCTATTCACTAGTGAACTTGATGTGGTTCTGGGGCAAGCCGCTTGTCAAGGTGACATGCAGGGTCTGATAACGCAATGTGAACCTTATGTTATGAAGGGCAGTTTGTTGCCGCCAACGGGATCTGAAGGATGCTGCGCTGCGATAAAAACGTTAGACATTCCATGCGCGTGCCAGCACGTGACCAAGGTGGTCGAGACGGTGGTTGACATGGGCAAGGTGGTTAAGGTCGTCAGGTCCTGCGGTATCCCTGTTCCTGAAGGAATGAAGTGTGGAAGTTATACAGTTCCACCGGGAAGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

120

Amino Acids

12.49

Weight (kDa)

5.71

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 109 4.9e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 109 1.1e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33550 AT4G33550
fragaria_vesca FvH4_3g29300 FvH4_7g02210
malus_domestica MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica Prupe.2G028300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0218541
rosa_laevigata RLG00000002359
rosa_multiflora Rmu_sc0001301.1_g000031
rosa_roxburghii Rroxscaffold_3G00240850
rosa_rugosa Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 96, 167, 297
AclI AACGTT 1 cut(s) 206
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 201, 333
AcvI CACGTG 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 173
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 2 cut(s) 29, 35
AluI AGCT 2 cut(s) 29, 35
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 2 cut(s) 121, 294
ApeKI GCWGC 3 cut(s) 35, 189, 194
ApoI RAATTY 1 cut(s) 54
AspLEI GCGC 2 cut(s) 194, 224
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 235
BbvI GCAGC 3 cut(s) 22, 176, 181
BciVI GTATCC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 245
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 5 cut(s) 36, 96, 167, 190, 195
BlsI GCNGC 5 cut(s) 37, 97, 168, 191, 196
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 22, 176, 181
Bsh1236I CGCG 1 cut(s) 224
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 96, 167, 297
BspFNI CGCG 1 cut(s) 224
BspPI GGATC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 256, 340
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 93, 226, 230
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 2 cut(s) 194, 224
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 2 cut(s) 35, 41
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 22, 176, 181
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 191
Cac8I GCNNGC 3 cut(s) 93, 226, 230
CaiI CAGNNNCTG 2 cut(s) 121, 294
CfoI GCGC 2 cut(s) 194, 224
Cfr13I GGNCC 1 cut(s) 291
CviAII CATG 3 cut(s) 112, 219, 265
CviJI RGCY 3 cut(s) 29, 35, 95
CviKI_1 RGCY 3 cut(s) 29, 35, 95
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 2 cut(s) 201, 333
Eco72I CACGTG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 115, 222, 268
FaiI YATR 7 cut(s) 26, 113, 144, 149, 220, 266, 336
FatI CATG 3 cut(s) 111, 218, 264
Fnu4HI GCNGC 5 cut(s) 36, 96, 167, 190, 195
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 36, 96, 167, 190, 195
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 193, 223
GluI GCNGC 5 cut(s) 36, 96, 167, 190, 195
HapII CCGG 1 cut(s) 347
HhaI GCGC 2 cut(s) 194, 224
Hin1II CATG 3 cut(s) 115, 222, 268
Hin6I GCGC 2 cut(s) 192, 222
HinP1I GCGC 2 cut(s) 192, 222
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 71, 137, 262
Hpy188I TCNGA 2 cut(s) 123, 181
Hpy188III TCNNGA 2 cut(s) 250, 311
Hpy8I GTNNAC 3 cut(s) 71, 137, 262
HpyAV CCTTC 3 cut(s) 145, 176, 308
HpyCH4III ACNGT 2 cut(s) 256, 340
HpyCH4IV ACGT 2 cut(s) 206, 234
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 41
HpySE526I ACGT 2 cut(s) 206, 234
Hsp92II CATG 3 cut(s) 115, 222, 268
HspAI GCGC 2 cut(s) 192, 222
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 71, 101, 242, 274, 307, 318, 324
Lsp1109I GCAGC 3 cut(s) 22, 176, 181
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 206, 234
MaeIII GTNAC 2 cut(s) 107, 235
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 176
MluCI AATT 1 cut(s) 54
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 223
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 35, 41
NciI CCSGG 1 cut(s) 348
NdeII GATC 1 cut(s) 176
NlaIII CATG 3 cut(s) 115, 222, 268
NmuCI GTSAC 2 cut(s) 107, 235
NspI RCATGY 1 cut(s) 115
PkrI GCNGC 5 cut(s) 37, 97, 168, 191, 196
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 291
PspCI CACGTG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
PstNI CAGNNNCTG 2 cut(s) 121, 294
PsuI RGATCY 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 5 cut(s) 36, 96, 167, 190, 195
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 223
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 54
SsiI CCGC 3 cut(s) 96, 167, 297
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 256, 340
TaiI ACGT 2 cut(s) 209, 237
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 54
TauI GCSGC 2 cut(s) 98, 169
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 2 cut(s) 107, 235
TseI GCWGC 3 cut(s) 35, 189, 194
Tsp45I GTSAC 2 cut(s) 107, 235
TspDTI ATGAA 3 cut(s) 13, 164, 335
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.