Rorug01G0215600
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011865
Physical Location & Seq
Forward (+)
30784102 .. 30786489
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0215600.1

Sequence Viewer

Length: 771 bp
ATGGAGACAAAGGGGAAGGTATTCTGCAATCCATTCTACTTTGTGGTTGGAACAGTTGAGCTTTGTATTGGATTTCTAAATTTTCATCTTGACTCCAATGAGGGAAACCATCACAATACTCTAGTTAGAGCAAATGCACCCCAAGAGTCAATAGGCAAAGGCAAAAGGCAAGGTCTTGCCTCCTATTTGTGCAAAGGCAAAAGACAAAAGGCAATTGCACCCCAAGAGTCAAAAGGCAAAAGGCTAAACCATGCATATGCCGTTCTTTTGGTCCAAGCCTTGCCATTGGGCTTGGTCGGGAAGGCAGCTGATCGTCCAATAATTTTGCGGTGCATTGCAGCTTTGTCATTTTTTGCCATTTTGGCTGGTCTTGGACGTCCAAGATCAGTGCGGTGCATTTGCTCTTATTGGCATTATACTAAGAGTGGTCTTTATACTGTTAAAAGTGGTTATGGATTGGCACAGGATAGCAAGGAAATGACTGAAGGTTGTGAGGGTTGTTCACACTTACAGGATTATCCAGTCTGGAAGTATATTTGGGGGCTTAAGGTACCAGCAGCAGCAAGGATAAACAATGTGGGTACTAGAATTTCTCCTTTCCATTTTCATGGGCCAACTTCTGGAACTGGATTCTCTTCTGATCAAAGCTTCTCTGGTTGTTATGCAATGCTGCCAGCTGCAACTGAAGCATCTCAGCAAGGAAAAATTCTCCTGATTCTAGGACACTTTGGGATGCCAGAGAAGGATCATTTCCTGTTACATAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

256

Amino Acids

28.02

Weight (kDa)

9.34

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33550 AT4G33550
fragaria_vesca FvH4_3g29300 FvH4_7g02210
malus_domestica MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica Prupe.2G028300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0218541
rosa_laevigata RLG00000002359
rosa_multiflora Rmu_sc0001301.1_g000031
rosa_roxburghii Rroxscaffold_3G00240850
rosa_rugosa Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 379
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 550
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 2 cut(s) 328, 391
AclWI GGATC 1 cut(s) 753
AcsI RAATTY 3 cut(s) 79, 588, 705
AcuI CTGAAG 2 cut(s) 504, 705
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 2 cut(s) 552, 583
AfiI CCNNNNNNNGG 1 cut(s) 620
AflII CTTAAG 1 cut(s) 545
AluBI AGCT 5 cut(s) 61, 308, 341, 648, 677
AluI AGCT 5 cut(s) 61, 308, 341, 648, 677
AlwI GGATC 1 cut(s) 753
AoxI GGCC 1 cut(s) 611
ApeKI GCWGC 6 cut(s) 305, 338, 557, 560, 670, 677
ApoI RAATTY 3 cut(s) 79, 588, 705
Asp700I GAANNNNTTC 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 550
AspS9I GGNCC 2 cut(s) 271, 611
AvaII GGWCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 550
BbvI GCAGC 6 cut(s) 317, 350, 569, 572, 657, 664
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 245
BclI TGATCA 1 cut(s) 640
BfaI CTAG 3 cut(s) 122, 585, 719
BfrI CTTAAG 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 362
BisI GCNGC 6 cut(s) 306, 339, 558, 561, 671, 678
BlsI GCNGC 6 cut(s) 307, 340, 559, 562, 672, 679
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 271, 611
BmiI GGNNCC 1 cut(s) 552
BmsI GCATC 2 cut(s) 698, 723
BsaHI GRCGYC 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 2 cut(s) 521, 631
Bse3DI GCAATG 2 cut(s) 333, 672
BseGI GGATG 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 2 cut(s) 333, 672
BseMII CTCAG 1 cut(s) 707
BseNI ACTGG 2 cut(s) 521, 631
BseXI GCAGC 6 cut(s) 317, 350, 569, 572, 657, 664
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 620
BsnI GGCC 1 cut(s) 613
Bsp143I GATC 4 cut(s) 310, 383, 640, 745
BspACI CCGC 2 cut(s) 328, 391
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 552
BspPI GGATC 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 333, 672
BsrI ACTGG 2 cut(s) 521, 631
BssMI GATC 4 cut(s) 310, 383, 640, 745
BssNI GRCGYC 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 55, 439
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 2 cut(s) 420, 693
BstF5I GGATG 1 cut(s) 738
BstKTI GATC 4 cut(s) 313, 386, 643, 748
BstMBI GATC 4 cut(s) 310, 383, 640, 745
BstMWI GCNNNNNNNGC 2 cut(s) 362, 686
BstV1I GCAGC 6 cut(s) 317, 350, 569, 572, 657, 664
BstXI CCANNNNNNTGG 1 cut(s) 608
BsuRI GGCC 1 cut(s) 613
BtsCI GGATG 1 cut(s) 738
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 675
Cfr13I GGNCC 2 cut(s) 271, 611
Csp6I GTAC 2 cut(s) 551, 582
CviAII CATG 2 cut(s) 251, 608
CviQI GTAC 2 cut(s) 551, 582
DdeI CTNAG 2 cut(s) 420, 693
DpnI GATC 4 cut(s) 312, 385, 642, 747
DpnII GATC 4 cut(s) 310, 383, 640, 745
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 504, 705
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 2 cut(s) 254, 611
FatI CATG 2 cut(s) 250, 607
FauNDI CATATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 6 cut(s) 306, 339, 558, 561, 671, 678
FokI GGATG 1 cut(s) 745
Fsp4HI GCNGC 6 cut(s) 306, 339, 558, 561, 671, 678
FspBI CTAG 3 cut(s) 122, 585, 719
GluI GCNGC 6 cut(s) 306, 339, 558, 561, 671, 678
HaeIII GGCC 1 cut(s) 613
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 2 cut(s) 254, 611
HindIII AAGCTT 1 cut(s) 646
HinfI GANTC 5 cut(s) 92, 146, 227, 630, 715
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 5 cut(s) 89, 298, 526, 621, 712
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 4 cut(s) 10, 295, 479, 736
HpyCH4III ACNGT 2 cut(s) 55, 439
HpyCH4IV ACGT 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 686
HpyF3I CTNAG 2 cut(s) 420, 693
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 2 cut(s) 254, 611
KpnI GGTACC 1 cut(s) 554
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 4 cut(s) 310, 383, 640, 745
Lsp1109I GCAGC 6 cut(s) 317, 350, 569, 572, 657, 664
LweI GCATC 2 cut(s) 698, 723
MaeI CTAG 3 cut(s) 122, 585, 719
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 756
MalI GATC 4 cut(s) 312, 385, 642, 747
MboI GATC 4 cut(s) 310, 383, 640, 745
MboII GAAGA 1 cut(s) 627
MfeI CAATTG 1 cut(s) 213
MluCI AATT 5 cut(s) 79, 213, 321, 588, 705
MlyI GAGTC 3 cut(s) 86, 155, 236
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 3 cut(s) 94, 190, 487
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 3 cut(s) 441, 546, 769
MslI CAYNNNNRTG 2 cut(s) 255, 606
MspA1I CMGCKG 2 cut(s) 308, 677
MspCI CTTAAG 1 cut(s) 545
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 362, 686
NdeI CATATG 1 cut(s) 256
NdeII GATC 4 cut(s) 310, 383, 640, 745
NlaIII CATG 2 cut(s) 254, 611
NlaIV GGNNCC 1 cut(s) 552
NsiI ATGCAT 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 630, 715
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 6 cut(s) 307, 340, 559, 562, 672, 679
PleI GAGTC 3 cut(s) 86, 154, 235
PpsI GAGTC 3 cut(s) 86, 154, 235
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 2 cut(s) 271, 611
PvuII CAGCTG 2 cut(s) 308, 677
RsaI GTAC 2 cut(s) 552, 583
RsaNI GTAC 2 cut(s) 551, 582
RseI CAYNNNNRTG 2 cut(s) 255, 606
SaqAI TTAA 3 cut(s) 441, 546, 769
SatI GCNGC 6 cut(s) 306, 339, 558, 561, 671, 678
Sau3AI GATC 4 cut(s) 310, 383, 640, 745
Sau96I GGNCC 2 cut(s) 271, 611
SchI GAGTC 3 cut(s) 86, 155, 236
SfaNI GCATC 2 cut(s) 698, 723
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 255, 606
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 5 cut(s) 79, 213, 321, 588, 705
SsiI CCGC 2 cut(s) 328, 391
SspMI CTAG 3 cut(s) 122, 585, 719
TaaI ACNGT 2 cut(s) 55, 439
TaiI ACGT 1 cut(s) 379
TasI AATT 5 cut(s) 79, 213, 321, 588, 705
TfiI GAWTC 2 cut(s) 630, 715
Tru1I TTAA 3 cut(s) 441, 546, 769
Tru9I TTAA 3 cut(s) 441, 546, 769
TscAI CASTG 1 cut(s) 393
TseI GCWGC 6 cut(s) 305, 338, 557, 560, 670, 677
TspDTI ATGAA 2 cut(s) 74, 596
TspRI CASTG 1 cut(s) 393
Van91I CCANNNNNTGG 1 cut(s) 620
Vha464I CTTAAG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 79, 588, 705
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 3 cut(s) 122, 585, 719
ZraI GACGTC 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.