FvH4_3g29300
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011865
Physical Location & Seq
Forward (+)
22390864 .. 22391329
466 bp
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UTR
Exon/CDS
Intron
FvH4_3g29300.t1

Sequence Viewer

Length: 357 bp
ATGGAAATGCTCAATCTTCGATTCATGGTTTTAGCTGCTATTGTTGTGATAGGAATTCTATTCACTAGTGAAGTTGATGTGGTTCAGGGGCAAGTTTGCCAAGGTGACATGCAAGGTCTGATAACGCAATGTGAGCCTTATGTTATGAAGGGTAGTGTACTGCCTCCAACGGCATCTCAAGGATGCTGTTCTGCGATAAAAACGTTAGACATTCCATGCGTGTGCCGGCACGTGACCAAGGTGGTCGAGGCGGTGGTTGACATGGTTAAGGTGGTTAAGGTCGTTAGGTCCTGTGGTATCCCTGTTCCCAAGGGAATGAACTGTGGAAGTTATACAGTTCCACCGGGAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

119

Amino Acids

12.47

Weight (kDa)

7.5

Isoelectric Point (pI)

19.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 28 - 108 2.1e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 33 - 108 6.3e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011865)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33550 AT4G33550
fragaria_vesca FvH4_3g29300 FvH4_7g02210
malus_domestica MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica Prupe.2G028300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0218541
rosa_laevigata RLG00000002359
rosa_multiflora Rmu_sc0001301.1_g000031
rosa_roxburghii Rroxscaffold_3G00240850
rosa_rugosa Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclI AACGTT 1 cut(s) 203
AcsI RAATTY 1 cut(s) 54
AcvI CACGTG 1 cut(s) 232
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 288
BbrPI CACGTG 1 cut(s) 232
BbvI GCAGC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 186
BciVI GTATCC 1 cut(s) 308
BcnI CCSGG 1 cut(s) 345
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 173, 182
BpuEI CTTGAG 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 100, 237, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse118I RCCGGY 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 100, 237, 309
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 22
BsiSI CCGG 2 cut(s) 226, 344
BslI CCNNNNNNNGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 100, 237, 309
BssT1I CCWWGG 3 cut(s) 100, 237, 309
Bst4CI ACNGT 2 cut(s) 323, 337
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 227
BstF5I GGATG 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 158
CviAII CATG 4 cut(s) 25, 109, 216, 262
CviJI RGCY 2 cut(s) 35, 136
CviKI_1 RGCY 2 cut(s) 35, 136
CviQI GTAC 1 cut(s) 158
Eco130I CCWWGG 3 cut(s) 100, 237, 309
Eco47I GGWCC 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 54
EcoT14I CCWWGG 3 cut(s) 100, 237, 309
ErhI CCWWGG 3 cut(s) 100, 237, 309
FaeI CATG 4 cut(s) 28, 112, 219, 265
FaiI YATR 7 cut(s) 26, 110, 141, 146, 217, 263, 333
FatI CATG 4 cut(s) 24, 108, 215, 261
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 36
HapII CCGG 2 cut(s) 226, 344
Hin1II CATG 4 cut(s) 28, 112, 219, 265
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 21
HpaII CCGG 2 cut(s) 226, 344
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 158, 259
Hpy188I TCNGA 1 cut(s) 120
Hpy8I GTNNAC 2 cut(s) 158, 259
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 323, 337
HpyCH4IV ACGT 2 cut(s) 203, 231
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 2 cut(s) 203, 231
Hsp92II CATG 4 cut(s) 28, 112, 219, 265
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
LpnPI CCDG 4 cut(s) 71, 239, 304, 315
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 173, 182
MaeI CTAG 1 cut(s) 66
MaeII ACGT 2 cut(s) 203, 231
MaeIII GTNAC 2 cut(s) 104, 232
MboII GAAGA 1 cut(s) 8
MluCI AATT 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 2 cut(s) 174, 241
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 2 cut(s) 267, 276
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 2 cut(s) 226, 344
MspR9I CCNGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 345
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 4 cut(s) 28, 112, 219, 265
NmuCI GTSAC 2 cut(s) 104, 232
NspI RCATGY 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 37
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 288
PspCI CACGTG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 267, 276
SatI GCNGC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 345
SetI ASST 9 cut(s) 37, 106, 118, 206, 234, 243, 273, 282, 290
SfaNI GCATC 2 cut(s) 173, 182
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 3 cut(s) 100, 237, 309
TaaI ACNGT 2 cut(s) 323, 337
TaiI ACGT 2 cut(s) 206, 234
TaqI TCGA 2 cut(s) 19, 246
TasI AATT 1 cut(s) 54
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 267, 276
Tru9I TTAA 2 cut(s) 267, 276
TseFI GTSAC 2 cut(s) 104, 232
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 104, 232
TspDTI ATGAA 3 cut(s) 13, 161, 332
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.