AT4G34340

Transcription factor TFIID complex subunit 8 C-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011784
Physical Location & Seq
Reverse (-)
16426483 .. 16428013
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34340.2

Sequence Viewer

Length: 1062 bp
ATGAACACAGAGAGAGCTCAAGAAGGTGATAGGAACGATGCCGCATCTTCCTCTGGCTGCTCCGAGTCCTACGAGTTTAGCCACGCAGCCGCTAAAGCTGCAGTAGCTCAGGTCTGCGAGAGCGTTGGGTACGAGAATTTCAAGGATCCAGCTCTCGAATCTCTATCTGGATTCGCACTCCAGTACATTCTTCAGCTAGGTAAAACCGCTACTTCCTTCGCTAATCTAACTGGTAGGAGTCAGTGTAACGTGTTCGATATCATTCTCGCTTTGGATGATTTGACTGATAACAATGGCGAACAAGGAATTTCGTCTGAGAGTTGTTCATTAGGTCGTTCGATTAAACTTAGGGAGATTATCGATTTCGTTAATTCGAGTGAAGAAGTCCCTTTCTCGCAGCCATTGCCAAGTTTTCCTGTAGCTATAAGTGATAGGAGTAGGAAGATGATCCCAAGCTTTGTTGAAATTGGTGAAACTCCACCTGGGAAACATATTCCTTTGTGGCTACCAGCTTTTCCTGATCCTCATACTTATAAGGAAACCCCTATGTGGATCGAAAGAGTATCAGATCCAAGGGGAGATAAGATTGAACAAGCGAGGCAGAGACGAAAGGCTGAGAGAGCTTTGTTGAGTTTGCAGAGGAAACTTGTTTGTAAAATCTCCTCAAGGAATCCTGTGTGGGGAGATATGGATGGTGTGAAAGAAGAAATGAGAGATGATGAGAGTGAACTGCGTTCTGTATCGTCCGGGGAGAAAGTCGAATCATTGAATAGAGATGGCTTATCAGTGATAGAGGCATTTGCTCCTGCTATGGAGGCTGCAAGAGATGGGTTTTCTAGTGAAGCTCACACTGAATGGAAGAAGAATAAACCTGTTGCTCTTTCTAAGCTCAGAACCGAGAAGAAATTTCTCGGACAACCTTTGGATCTAAGTCTACAGATGAAGGGTGAAGATAGACCCATATCCTTTGTGCGTGAGGAGGATAGAGATGACAAAAGAAGAAGAGCGGAGTTCATTTTGAGACAGTGTATGGAGAACCCAGTAGACCTCAATCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

353

Amino Acids

39.55

Weight (kDa)

5.21

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 24 - 69 2.1e-12 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AccBSI CCGCTC 1 cut(s) 1007
AccI GTMKAC 2 cut(s) 934, 1044
AciI CCGC 4 cut(s) 42, 90, 207, 1007
AclWI GGATC 7 cut(s) 140, 153, 442, 515, 560, 563, 933
AcsI RAATTY 3 cut(s) 136, 306, 905
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 131, 185
AfiI CCNNNNNNNGG 2 cut(s) 549, 680
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 142, 464, 590, 769
AjnI CCWGG 1 cut(s) 481
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 598, 1015
AlwI GGATC 7 cut(s) 140, 153, 442, 515, 560, 563, 933
ApeKI GCWGC 5 cut(s) 57, 86, 98, 397, 818
ApoI RAATTY 3 cut(s) 136, 306, 905
AsuC2I CCSGG 1 cut(s) 748
AsuHPI GGTGA 3 cut(s) 38, 482, 959
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 5 cut(s) 44, 85, 98, 409, 805
BccI CCATC 3 cut(s) 686, 770, 821
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 598, 1015
BfaI CTAG 2 cut(s) 197, 837
BfmI CTRYAG 3 cut(s) 99, 417, 935
BisI GCNGC 7 cut(s) 42, 58, 87, 90, 99, 398, 819
BlsI GCNGC 7 cut(s) 43, 59, 88, 91, 100, 399, 820
Bme1390I CCNGG 2 cut(s) 483, 748
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 483, 748
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 2 cut(s) 28, 53
BmuI ACTGGG 1 cut(s) 1034
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 649
BpuMI CCSGG 1 cut(s) 748
Bsa29I ATCGAT 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 482, 572, 747
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 680
Bse1I ACTGG 3 cut(s) 181, 235, 1040
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 482, 572, 747
BseGI GGATG 2 cut(s) 280, 697
BseLI CCNNNNNNNGG 2 cut(s) 549, 680
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 4 cut(s) 122, 306, 606, 904
BseNI ACTGG 3 cut(s) 181, 235, 1040
BseRI GAGGAG 2 cut(s) 652, 992
BseXI GCAGC 5 cut(s) 44, 85, 98, 409, 805
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 549, 680
BsmAI GTCTC 2 cut(s) 598, 1015
BsmBI CGTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 6 cut(s) 145, 447, 520, 552, 568, 925
BspACI CCGC 4 cut(s) 42, 90, 207, 1007
BspCNI CTCAG 4 cut(s) 121, 307, 607, 903
BspDI ATCGAT 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 7 cut(s) 140, 153, 442, 515, 560, 563, 933
BspQI GCTCTTC 1 cut(s) 997
BsrBI CCGCTC 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 401
BsrI ACTGG 3 cut(s) 181, 235, 1040
BssECI CCNNGG 3 cut(s) 482, 572, 747
BssMI GATC 6 cut(s) 145, 447, 520, 552, 568, 925
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 1026
Bst6I CTCTTC 1 cut(s) 997
BstAPI GCANNNNNTGC 1 cut(s) 403
BstDEI CTNAG 7 cut(s) 108, 315, 347, 615, 885, 890, 929
BstF5I GGATG 2 cut(s) 280, 697
BstKTI GATC 6 cut(s) 148, 450, 523, 555, 571, 928
BstMAI GTCTC 2 cut(s) 598, 1015
BstMBI GATC 6 cut(s) 145, 447, 520, 552, 568, 925
BstMWI GCNNNNNNNGC 6 cut(s) 95, 98, 104, 403, 620, 815
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 481, 746
BstSFI CTRYAG 3 cut(s) 99, 417, 935
BstV1I GCAGC 5 cut(s) 44, 85, 98, 409, 805
BstX2I RGATCY 3 cut(s) 145, 568, 925
BstYI RGATCY 3 cut(s) 145, 568, 925
Bsu15I ATCGAT 1 cut(s) 360
BsuTUI ATCGAT 1 cut(s) 360
BtsCI GGATG 2 cut(s) 280, 697
BtsIMutI CAGTG 4 cut(s) 248, 792, 849, 1031
ClaI ATCGAT 1 cut(s) 360
Csp6I GTAC 2 cut(s) 130, 184
CviQI GTAC 2 cut(s) 130, 184
DdeI CTNAG 7 cut(s) 108, 315, 347, 615, 885, 890, 929
DpnI GATC 6 cut(s) 147, 449, 522, 554, 570, 927
DpnII GATC 6 cut(s) 145, 447, 520, 552, 568, 925
Eam1104I CTCTTC 1 cut(s) 997
EarI CTCTTC 1 cut(s) 997
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 598
FaiI YATR 9 cut(s) 425, 492, 528, 534, 548, 689, 812, 962, 1031
FaqI GGGAC 1 cut(s) 371
FblI GTMKAC 2 cut(s) 934, 1044
Fnu4HI GCNGC 7 cut(s) 42, 58, 87, 90, 99, 398, 819
FokI GGATG 2 cut(s) 287, 704
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 7 cut(s) 42, 58, 87, 90, 99, 398, 819
FspBI CTAG 2 cut(s) 197, 837
GluI GCNGC 7 cut(s) 42, 58, 87, 90, 99, 398, 819
GsuI CTGGAG 1 cut(s) 164
HapII CCGG 1 cut(s) 747
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 6 cut(s) 65, 158, 171, 238, 670, 761
HpaII CCGG 1 cut(s) 747
HphI GGTGA 3 cut(s) 38, 482, 959
Hpy166II GTNNAC 3 cut(s) 728, 935, 1045
Hpy188I TCNGA 5 cut(s) 64, 316, 568, 893, 914
Hpy188III TCNNGA 4 cut(s) 20, 155, 168, 518
Hpy8I GTNNAC 3 cut(s) 728, 935, 1045
HpyAV CCTTC 3 cut(s) 17, 226, 937
HpyCH4III ACNGT 1 cut(s) 1026
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 101, 637, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 98, 104, 403, 620, 815
HpyF3I CTNAG 7 cut(s) 108, 315, 347, 615, 885, 890, 929
HpySE526I ACGT 1 cut(s) 249
Kzo9I GATC 6 cut(s) 145, 447, 520, 552, 568, 925
LguI GCTCTTC 1 cut(s) 997
LmnI GCTCC 2 cut(s) 65, 808
Lsp1109I GCAGC 5 cut(s) 44, 85, 98, 409, 805
LweI GCATC 2 cut(s) 28, 53
MaeI CTAG 2 cut(s) 197, 837
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 245
MalI GATC 6 cut(s) 147, 449, 522, 554, 570, 927
MbiI CCGCTC 1 cut(s) 1007
MboI GATC 6 cut(s) 145, 447, 520, 552, 568, 925
MflI RGATCY 3 cut(s) 145, 568, 925
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 5 cut(s) 136, 306, 370, 465, 905
MlyI GAGTC 2 cut(s) 74, 247
MseI TTAA 2 cut(s) 342, 369
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 2 cut(s) 483, 748
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 6 cut(s) 95, 98, 104, 403, 620, 815
NciI CCSGG 1 cut(s) 748
NdeII GATC 6 cut(s) 145, 447, 520, 552, 568, 925
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 997
PfeI GAWTC 4 cut(s) 158, 171, 670, 761
PkrI GCNGC 7 cut(s) 43, 59, 88, 91, 100, 399, 820
PleI GAGTC 2 cut(s) 73, 246
PpsI GAGTC 2 cut(s) 73, 246
PsiI TTATAA 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 3 cut(s) 145, 568, 925
RsaI GTAC 2 cut(s) 131, 185
RsaNI GTAC 2 cut(s) 130, 184
SacI GAGCTC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 997
SaqAI TTAA 2 cut(s) 342, 369
SatI GCNGC 7 cut(s) 42, 58, 87, 90, 99, 398, 819
Sau3AI GATC 6 cut(s) 145, 447, 520, 552, 568, 925
SchI GAGTC 2 cut(s) 74, 247
ScrFI CCNGG 2 cut(s) 483, 748
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 2 cut(s) 28, 53
SfcI CTRYAG 3 cut(s) 99, 417, 935
SmlI CTYRAG 2 cut(s) 18, 664
SmoI CTYRAG 2 cut(s) 18, 664
Sse9I AATT 5 cut(s) 136, 306, 370, 465, 905
SsiI CCGC 4 cut(s) 42, 90, 207, 1007
SspMI CTAG 2 cut(s) 197, 837
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 481, 746
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 1 cut(s) 1026
TaiI ACGT 1 cut(s) 252
TaqI TCGA 7 cut(s) 156, 255, 338, 360, 374, 555, 759
TasI AATT 5 cut(s) 136, 306, 370, 465, 905
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 44, 92
TfiI GAWTC 4 cut(s) 158, 171, 670, 761
Tru1I TTAA 2 cut(s) 342, 369
Tru9I TTAA 2 cut(s) 342, 369
TscAI CASTG 4 cut(s) 248, 792, 856, 1031
TseI GCWGC 5 cut(s) 57, 86, 98, 397, 818
TspDTI ATGAA 4 cut(s) 17, 315, 956, 1003
TspRI CASTG 4 cut(s) 248, 792, 856, 1031
XapI RAATTY 3 cut(s) 136, 306, 905
XmiI GTMKAC 2 cut(s) 934, 1044
XspI CTAG 2 cut(s) 197, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.