MD12G1113700.v1.1

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0011784
Physical Location & Seq
Forward (+)
18088841 .. 18090028
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1113700.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGAGCCATGGAGATGCGGACAGTAGCAGCAGAGTGAATCAACCCGGTAGTGATGTGCCGAGGAGAGCAGCAGGAGGAGGAGCCGATGAGTTTGGCCGGGCAGTGTCGAAAGTTGCGGTGGCGCAGATATGCGAGAGCGTTGGGTTTCAGAGCTTCAAAGAGTCTGCGATGGACGCCATGGCCGACATTGCCATCCGATACCTCCGTGACTTAGGGAAGATGTCGAGTTTTTACGCCAATTTGGCGGGCAGAACCGAGTCCAATGTGTTTGATATTATTAGGGCGCTGGAGGATTTGGAGTCATCGCAAGGGTTTTTGGGTGCGGCGGAGGTGGGTCATTGTCTTGCAGAGTCCGGGATTGTAAGAGGCATTGTGGAGTATGTAGGTTCGGCTGAGGAGATCCCGTTTGCACAGCCGTTGCCTCGGTTTCCAGTGATCAAGCAACGAAAATTGATCCCGAATTTTGAGCAGATTGGGGAGGCACCGCCGAGTAAGCATTTGCCCAATTGGTTGCCGGCTTTCCCTGATCCACACACTTACATTCAAACACCAATGTGGAATGAGAGGAAGACTGATCCTCGAGAAGATAAGATGGAGCAGGCTCGGCAGAGGAGGAAGGCCGAGAGGTCTCTGTTGAGTCTGCAGCAGAGGTTATTGTGCAATGGAGAGGCTTCTAGTTCAGGAGGAGCCTCTGCAGCAGTGGCATTGGCTGGTGGCAACGGCGTTAATGATGGAAGGGGATTGTTATTATTACAGGGGAATGAGACTGATCAAAGTAATCCATTCCTTGAACCGCCAATCCAGCCGGGGGAGAAAGAAGTATCAGTATCCCAAGTGGTTTTGCCATCCCAGTTTTCGGATGAAATGGCAAAAGGGAACAACAATGATGGTTCTTCCCTTTTGGATGCGTTTGCGCCCGCCATTGAAGCAGTGAAAAGCGGAGCATGGATGGATGGAGAGGACGAAAGGAGGCAGCTTCTTCCTGAAAGCAGACCCGCAGTGAATTTCAAGTTGAGAAGCGGGAAGAAGTTTTTGGGGCAATCGTTGGATCTGAGCCTGCAAAAGAAGGGTTCCGGAAGACCGGCATATTGGTTCGGGCGAGAGGAGGAGAGGGACGACAAGAAGAGGAGAGCAGAGTTTATTCTGAGACAGTCGATGGAAAACCCACAGGAACTCACTCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

396

Amino Acids

43.24

Weight (kDa)

5.44

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 30 - 99 5.9e-19 Bromodomain associated
TAF8_C PF10406 166 - 214 1.9e-20 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccIII TCCGGA 1 cut(s) 1073
AclWI GGATC 5 cut(s) 394, 448, 521, 569, 1056
AcoI YGGCCR 2 cut(s) 94, 180
AcsI RAATTY 2 cut(s) 460, 1003
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 808, 856
AgsI TTSAA 5 cut(s) 157, 545, 791, 926, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AleI CACNNNNGTG 1 cut(s) 553
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 2 cut(s) 153, 976
AluI AGCT 2 cut(s) 153, 976
Alw26I GTCTC 3 cut(s) 633, 758, 1141
AlwI GGATC 5 cut(s) 394, 448, 521, 569, 1056
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 1073
AoxI GGCC 3 cut(s) 94, 180, 618
ApeKI GCWGC 5 cut(s) 27, 68, 643, 695, 973
ApoI RAATTY 2 cut(s) 460, 1003
AspLEI GCGC 3 cut(s) 124, 286, 916
AsuC2I CCSGG 4 cut(s) 45, 98, 355, 807
AvaI CYCGRG 1 cut(s) 579
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 575, 1084
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 5 cut(s) 39, 80, 655, 707, 985
BccI CCATC 9 cut(s) 163, 200, 586, 725, 853, 881, 943, 947, 1150
BceAI ACGGC 2 cut(s) 400, 736
BciVI GTATCC 1 cut(s) 838
BclI TGATCA 2 cut(s) 435, 769
BcnI CCSGG 4 cut(s) 45, 98, 355, 807
BcoDI GTCTC 3 cut(s) 633, 758, 1141
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 2 cut(s) 641, 693
BfoI RGCGCY 1 cut(s) 287
BfuI GTATCC 1 cut(s) 838
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 6 cut(s) 28, 69, 324, 644, 696, 974
BlsI GCNGC 6 cut(s) 29, 70, 325, 645, 697, 975
Bme1390I CCNGG 4 cut(s) 45, 98, 355, 807
BmeT110I CYCGRG 1 cut(s) 579
BmiI GGNNCC 4 cut(s) 82, 483, 688, 1072
BmrFI CCNGG 4 cut(s) 45, 98, 355, 807
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 2 cut(s) 4, 895
BmuI ACTGGG 1 cut(s) 844
BpiI GAAGAC 2 cut(s) 575, 1084
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 393
BpuMI CCSGG 4 cut(s) 45, 98, 355, 807
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 5 cut(s) 7, 59, 177, 422, 806
BsaWI WCCGGW 1 cut(s) 1073
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 808, 856
Bse118I RCCGGY 2 cut(s) 514, 1081
Bse1I ACTGG 2 cut(s) 431, 850
Bse3DI GCAATG 2 cut(s) 186, 667
BseAI TCCGGA 1 cut(s) 1073
BseDI CCNNGG 5 cut(s) 7, 59, 177, 422, 806
BseGI GGATG 6 cut(s) 192, 845, 865, 910, 954, 958
BseLI CCNNNNNNNGG 2 cut(s) 808, 856
BseMI GCAATG 2 cut(s) 186, 667
BseMII CTCAG 3 cut(s) 384, 1043, 1136
BseNI ACTGG 2 cut(s) 431, 850
BseRI GAGGAG 9 cut(s) 76, 90, 93, 410, 625, 699, 1118, 1121, 1141
BseXI GCAGC 5 cut(s) 39, 80, 655, 707, 985
BshFI GGCC 3 cut(s) 96, 182, 620
BshNI GGYRCC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 7 cut(s) 45, 97, 354, 515, 806, 1074, 1082
BslFI GGGAC 1 cut(s) 1127
BslI CCNNNNNNNGG 2 cut(s) 808, 856
BsmAI GTCTC 3 cut(s) 633, 758, 1141
BsmFI GGGAC 1 cut(s) 1127
BsnI GGCC 3 cut(s) 96, 182, 620
Bso31I GGTCTC 1 cut(s) 633
BsoBI CYCGRG 1 cut(s) 579
Bsp13I TCCGGA 1 cut(s) 1073
Bsp143I GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
Bsp19I CCATGG 2 cut(s) 7, 177
BspANI GGCC 3 cut(s) 96, 182, 620
BspCNI CTCAG 3 cut(s) 385, 1044, 1137
BspEI TCCGGA 1 cut(s) 1073
BspLI GGNNCC 4 cut(s) 82, 483, 688, 1072
BspMAI CTGCAG 2 cut(s) 645, 697
BspPI GGATC 5 cut(s) 394, 448, 521, 569, 1056
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 633
BsrDI GCAATG 2 cut(s) 186, 667
BsrFI RCCGGY 2 cut(s) 514, 1081
BsrI ACTGG 2 cut(s) 431, 850
BssAI RCCGGY 2 cut(s) 514, 1081
BssECI CCNNGG 5 cut(s) 7, 59, 177, 422, 806
BssMI GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 7, 177
Bst4CI ACNGT 2 cut(s) 23, 1152
Bst6I CTCTTC 1 cut(s) 1118
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 5 cut(s) 247, 516, 600, 918, 1058
BstDEI CTNAG 5 cut(s) 211, 393, 1052, 1145, 1179
BstDSI CCRYGG 2 cut(s) 7, 177
BstF5I GGATG 6 cut(s) 192, 845, 865, 910, 954, 958
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 3 cut(s) 124, 286, 916
BstKTI GATC 7 cut(s) 402, 438, 456, 529, 577, 772, 1051
BstMAI GTCTC 3 cut(s) 633, 758, 1141
BstMBI GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
BstMWI GCNNNNNNNGC 9 cut(s) 173, 188, 242, 493, 604, 695, 701, 802, 926
BstSCI CCNGG 4 cut(s) 43, 96, 353, 805
BstSFI CTRYAG 2 cut(s) 641, 693
BstV1I GCAGC 5 cut(s) 39, 80, 655, 707, 985
BstV2I GAAGAC 2 cut(s) 575, 1084
BstX2I RGATCY 2 cut(s) 399, 1048
BstYI RGATCY 2 cut(s) 399, 1048
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 3 cut(s) 96, 182, 620
BtgI CCRYGG 2 cut(s) 7, 177
BtgZI GCGATG 2 cut(s) 182, 288
BtsCI GGATG 6 cut(s) 192, 845, 865, 910, 954, 958
BtsI GCAGTG 4 cut(s) 108, 705, 936, 1005
BtsIMutI CAGTG 5 cut(s) 108, 438, 705, 936, 1005
Cac8I GCNNGC 5 cut(s) 247, 516, 600, 918, 1058
CfoI GCGC 3 cut(s) 124, 286, 916
Cfr10I RCCGGY 2 cut(s) 514, 1081
CseI GACGC 1 cut(s) 182
CviAII CATG 3 cut(s) 8, 178, 945
DdeI CTNAG 5 cut(s) 211, 393, 1052, 1145, 1179
DpnI GATC 7 cut(s) 401, 437, 455, 528, 576, 771, 1050
DpnII GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
EaeI YGGCCR 2 cut(s) 94, 180
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 7, 177
Eco31I GGTCTC 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 579
EcoT14I CCWWGG 2 cut(s) 7, 177
ErhI CCWWGG 2 cut(s) 7, 177
FaeI CATG 3 cut(s) 11, 181, 948
FaiI YATR 6 cut(s) 9, 130, 179, 381, 946, 1087
FaqI GGGAC 1 cut(s) 1127
FatI CATG 3 cut(s) 7, 177, 944
FauI CCCGC 4 cut(s) 238, 925, 1003, 1013
FbaI TGATCA 2 cut(s) 435, 769
Fnu4HI GCNGC 6 cut(s) 28, 69, 324, 644, 696, 974
FokI GGATG 6 cut(s) 179, 832, 872, 917, 961, 965
Fsp4HI GCNGC 6 cut(s) 28, 69, 324, 644, 696, 974
FspBI CTAG 1 cut(s) 675
GlaI GCGC 3 cut(s) 123, 285, 915
GluI GCNGC 6 cut(s) 28, 69, 324, 644, 696, 974
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 96, 182, 620
HapII CCGG 7 cut(s) 45, 97, 354, 515, 806, 1074, 1082
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 124, 286, 916
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 11, 181, 948
Hin6I GCGC 3 cut(s) 122, 284, 914
HinP1I GCGC 3 cut(s) 122, 284, 914
HinfI GANTC 6 cut(s) 37, 161, 257, 299, 350, 637
HpaII CCGG 7 cut(s) 45, 97, 354, 515, 806, 1074, 1082
Hpy188I TCNGA 5 cut(s) 150, 197, 859, 1053, 1146
Hpy188III TCNNGA 5 cut(s) 457, 581, 681, 983, 1074
HpyAV CCTTC 3 cut(s) 610, 729, 1060
HpyCH4III ACNGT 2 cut(s) 23, 1152
HpyCH4V TGCA 6 cut(s) 347, 410, 643, 660, 695, 1060
HpyF10VI GCNNNNNNNGC 9 cut(s) 173, 188, 242, 493, 604, 695, 701, 802, 926
HpyF3I CTNAG 5 cut(s) 211, 393, 1052, 1145, 1179
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 11, 181, 948
HspAI GCGC 3 cut(s) 122, 284, 914
Kpn2I TCCGGA 1 cut(s) 1073
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Ksp22I TGATCA 2 cut(s) 435, 769
Kzo9I GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
LmnI GCTCC 4 cut(s) 80, 595, 686, 941
Lsp1109I GCAGC 5 cut(s) 39, 80, 655, 707, 985
LweI GCATC 2 cut(s) 4, 895
MaeI CTAG 1 cut(s) 675
MaeIII GTNAC 1 cut(s) 206
MalI GATC 7 cut(s) 401, 437, 455, 528, 576, 771, 1050
MboI GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
MboII GAAGA 8 cut(s) 229, 580, 596, 885, 971, 1036, 1089, 1135
MfeI CAATTG 1 cut(s) 505
MflI RGATCY 2 cut(s) 399, 1048
MluCI AATT 5 cut(s) 238, 449, 460, 505, 1003
MlyI GAGTC 5 cut(s) 170, 266, 308, 359, 646
MmeI TCCRAC 1 cut(s) 1026
MroI TCCGGA 1 cut(s) 1073
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 726
MslI CAYNNNNRTG 2 cut(s) 12, 553
MspI CCGG 7 cut(s) 45, 97, 354, 515, 806, 1074, 1082
MspR9I CCNGG 4 cut(s) 45, 98, 355, 807
MunI CAATTG 1 cut(s) 505
MwoI GCNNNNNNNGC 9 cut(s) 173, 188, 242, 493, 604, 695, 701, 802, 926
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 4 cut(s) 45, 98, 355, 807
NcoI CCATGG 2 cut(s) 7, 177
NdeII GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 3 cut(s) 11, 181, 948
NlaIV GGNNCC 4 cut(s) 82, 483, 688, 1072
NmeAIII GCCGAG 4 cut(s) 84, 513, 583, 646
NmuCI GTSAC 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 6 cut(s) 29, 70, 325, 645, 697, 975
PleI GAGTC 5 cut(s) 169, 265, 307, 358, 645
PpsI GAGTC 5 cut(s) 169, 265, 307, 358, 645
PspN4I GGNNCC 4 cut(s) 82, 483, 688, 1072
PstI CTGCAG 2 cut(s) 645, 697
PsuI RGATCY 2 cut(s) 399, 1048
RseI CAYNNNNRTG 2 cut(s) 12, 553
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 6 cut(s) 28, 69, 324, 644, 696, 974
Sau3AI GATC 7 cut(s) 399, 435, 453, 526, 574, 769, 1048
SchI GAGTC 5 cut(s) 170, 266, 308, 359, 646
ScrFI CCNGG 4 cut(s) 45, 98, 355, 807
SetI ASST 7 cut(s) 155, 204, 333, 388, 629, 653, 978
SfaNI GCATC 2 cut(s) 4, 895
SfcI CTRYAG 2 cut(s) 641, 693
Sfr274I CTCGAG 1 cut(s) 579
SlaI CTCGAG 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 12, 553
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 5 cut(s) 238, 449, 460, 505, 1003
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 43, 96, 353, 805
StyI CCWWGG 2 cut(s) 7, 177
TaaI ACNGT 2 cut(s) 23, 1152
TaqI TCGA 4 cut(s) 107, 224, 580, 1154
TasI AATT 5 cut(s) 238, 449, 460, 505, 1003
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 5 cut(s) 108, 438, 705, 936, 1005
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 5 cut(s) 27, 68, 643, 695, 973
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 876
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 5 cut(s) 108, 438, 705, 936, 1005
XapI RAATTY 2 cut(s) 460, 1003
XhoI CTCGAG 1 cut(s) 579
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.