pycom04g08910

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011784
Physical Location & Seq
Forward (+)
11087732 .. 11088922
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g08910.1

Sequence Viewer

Length: 1191 bp
ATGAACCATGGAGATGCGGACAGTAGCAGCAGAGTGAATCAACCAAGTAGCGATGCGCCAAGGAGAACAGGAGGTGGAGGAGGAGCTGATGAGTTTGGCCGGGCCTTGTCGACAGTTGCGGTGGCGCAGATATGCGAGAGCGTTGGGTTTCAGAGCTTCAAGGAGTCTGCTTTGGATTCCCTTGCCGACATTGCCATCAGACACCTCCGTGACCTAGGGAAGATGTCAAGTTTTTACGCCAACTTGGCGGGTAGAACCGAATCCAATGTGTTTGATATTATTGGGGCGTTGGAGGATTTGGAGTCGGCGCAAGGGTTTTTGGGTGCTGCCGAGGTGGGTCATTGTTTTGCAAAGTCTGGGATTGTAAGAGGCATTGTCGAGTATGTGGGTTCGGCTGAAGAGATCCCGTTTGCACAGCCATTGCCTTGGTTTCCGGTGATCAAACAACGGAAATTGATCCCAAATTTCGAGCAGATGGGCGAGGCTCCGCCAAGTAAGCATTTTCCCAATTGGTTGCCGGCTTTCCCTGATCCACATACTTACATCCAAACACCAATGTGGAATGAGAGGAAGACCGATCCTCGAGAAGATAAGATCGAGCAGGCTAGGCAGAGTAGGAAGGCTGAGAGGTCTCTGCTGAGTCTGCAGCAGAGGTTATTGTGCAATGGTGAGGCTTCTGGTTCAGGAGAAGCCTCTGCAGCAGTGGCATTGAGGGGCGGCAGCAGCGGCAGTAATGATGCAAAGGGATTGTTATTATTACAGGGGAACGAGAGTGATCAAAGTAATCCATTCCTTGAACCGCCAATCCAGCCGGGGGAGAAAGATGTATCAGTATCCCAAGTAGTTTTGCCATCTAGGTTTTCAGACGAAGTGGCAAAAGGGGACAATGCGGGTTCTTCCCTTTTGGATGCGTTTGCGCCCGCCATTGAAGCGGTGAAAAGCGGGGCGTGGATGGATGGAGACGATGAGAGGAGACAGCTTCTTCCCGAAACCAGGCCGTCAGTGAATTTCAAGTTCAGAAGCGGGAAGAAGTTTCTGGGGCAACCTTCGGATTTGAGCCTGCAACAGAAGGGTTCCGGAAGACCAGCATATTGGTTCGGGCGAGACGAGGAGAGGGATGACAAGAAGAGGAGAGCAGAGTTTATTCTTAGACAGTCGATGGAAAACCCACAGGAACTCACTCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

397

Amino Acids

43.19

Weight (kDa)

5.31

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 31 - 100 5.7e-18 Bromodomain associated
TAF8_C PF10406 167 - 215 2.8e-20 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 1076
AclWI GGATC 4 cut(s) 397, 451, 524, 572
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 463, 1006
AcuI CTGAAG 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 814, 993
AgsI TTSAA 4 cut(s) 160, 797, 929, 1012
AjnI CCWGG 1 cut(s) 992
AleI CACNNNNGTG 2 cut(s) 207, 556
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
AluBI AGCT 3 cut(s) 86, 156, 979
AluI AGCT 3 cut(s) 86, 156, 979
Alw26I GTCTC 4 cut(s) 636, 954, 967, 1098
AlwI GGATC 4 cut(s) 397, 451, 524, 572
Ama87I CYCGRG 1 cut(s) 582
Aor13HI TCCGGA 1 cut(s) 1076
AoxI GGCC 3 cut(s) 97, 102, 995
ApeKI GCWGC 6 cut(s) 27, 326, 646, 698, 720, 723
ApoI RAATTY 2 cut(s) 463, 1006
AspA2I CCTAGG 1 cut(s) 214
AspLEI GCGC 4 cut(s) 58, 127, 310, 919
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 101, 813
AsuHPI GGTGA 3 cut(s) 448, 680, 946
AvaI CYCGRG 1 cut(s) 582
AvrII CCTAGG 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 578, 1087
BbvI GCAGC 6 cut(s) 39, 313, 658, 710, 732, 735
BccI CCATC 6 cut(s) 203, 469, 859, 946, 950, 1153
BceAI ACGGC 1 cut(s) 982
BciT130I CCWGG 1 cut(s) 994
BciVI GTATCC 1 cut(s) 844
BclI TGATCA 2 cut(s) 438, 775
BcnI CCSGG 2 cut(s) 101, 813
BcoDI GTCTC 4 cut(s) 636, 954, 967, 1098
BfaI CTAG 3 cut(s) 215, 606, 855
BfmI CTRYAG 2 cut(s) 644, 696
BfuI GTATCC 1 cut(s) 844
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 8 cut(s) 28, 327, 647, 699, 718, 721, 724, 727
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 8 cut(s) 29, 328, 648, 700, 719, 722, 725, 728
Bme1390I CCNGG 3 cut(s) 101, 813, 994
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 486, 1075
BmrFI CCNGG 3 cut(s) 101, 813, 994
BmsI GCATC 4 cut(s) 4, 43, 727, 898
BpiI GAAGAC 2 cut(s) 578, 1087
BpuMI CCSGG 2 cut(s) 101, 813
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 6 cut(s) 7, 59, 214, 330, 425, 812
BsaWI WCCGGW 2 cut(s) 433, 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 814, 993
Bse118I RCCGGY 1 cut(s) 517
Bse3DI GCAATG 3 cut(s) 189, 419, 670
BseAI TCCGGA 1 cut(s) 1076
BseBI CCWGG 1 cut(s) 994
BseDI CCNNGG 6 cut(s) 7, 59, 214, 330, 425, 812
BseGI GGATG 5 cut(s) 543, 913, 957, 961, 1123
BseLI CCNNNNNNNGG 2 cut(s) 814, 993
BseMI GCAATG 3 cut(s) 189, 419, 670
BseMII CTCAG 2 cut(s) 615, 629
BseRI GAGGAG 5 cut(s) 93, 96, 985, 1124, 1144
BseXI GCAGC 6 cut(s) 39, 313, 658, 710, 732, 735
BshFI GGCC 3 cut(s) 99, 104, 997
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 5 cut(s) 100, 434, 518, 812, 1077
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 814, 993
BsmAI GTCTC 4 cut(s) 636, 954, 967, 1098
BsmBI CGTCTC 2 cut(s) 954, 1098
BsmFI GGGAC 1 cut(s) 896
BsnI GGCC 3 cut(s) 99, 104, 997
Bso31I GGTCTC 1 cut(s) 636
BsoBI CYCGRG 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
Bsp19I CCATGG 1 cut(s) 7
BspANI GGCC 3 cut(s) 99, 104, 997
BspCNI CTCAG 2 cut(s) 616, 630
BspEI TCCGGA 1 cut(s) 1076
BspLI GGNNCC 2 cut(s) 486, 1075
BspMAI CTGCAG 2 cut(s) 648, 700
BspPI GGATC 4 cut(s) 397, 451, 524, 572
BspTNI GGTCTC 1 cut(s) 636
BsrDI GCAATG 3 cut(s) 189, 419, 670
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 6 cut(s) 7, 59, 214, 330, 425, 812
BssMI GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
BssT1I CCWWGG 4 cut(s) 7, 59, 214, 425
Bst2UI CCWGG 1 cut(s) 994
Bst4CI ACNGT 3 cut(s) 23, 115, 1155
Bst6I CTCTTC 2 cut(s) 393, 1121
BstC8I GCNNGC 4 cut(s) 519, 603, 921, 1061
BstDEI CTNAG 4 cut(s) 624, 638, 1148, 1182
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 5 cut(s) 543, 913, 957, 961, 1123
BstHHI GCGC 4 cut(s) 58, 127, 310, 919
BstKTI GATC 7 cut(s) 405, 441, 459, 532, 580, 597, 778
BstMAI GTCTC 4 cut(s) 636, 954, 967, 1098
BstMBI GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
BstNI CCWGG 1 cut(s) 994
BstSCI CCNGG 3 cut(s) 99, 811, 992
BstSFI CTRYAG 2 cut(s) 644, 696
BstV1I GCAGC 6 cut(s) 39, 313, 658, 710, 732, 735
BstV2I GAAGAC 2 cut(s) 578, 1087
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 2 cut(s) 426, 1092
BstYI RGATCY 1 cut(s) 402
BsuI GTATCC 1 cut(s) 844
BsuRI GGCC 3 cut(s) 99, 104, 997
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 5 cut(s) 543, 913, 957, 961, 1123
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 708, 1008
Cac8I GCNNGC 4 cut(s) 519, 603, 921, 1061
CfoI GCGC 4 cut(s) 58, 127, 310, 919
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 102
CviAII CATG 1 cut(s) 8
DdeI CTNAG 4 cut(s) 624, 638, 1148, 1182
DpnI GATC 7 cut(s) 404, 440, 458, 531, 579, 596, 777
DpnII GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 393, 1121
EarI CTCTTC 2 cut(s) 393, 1121
EciI GGCGGA 1 cut(s) 477
Eco130I CCWWGG 4 cut(s) 7, 59, 214, 425
Eco31I GGTCTC 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 992
EcoT14I CCWWGG 4 cut(s) 7, 59, 214, 425
ErhI CCWWGG 4 cut(s) 7, 59, 214, 425
Esp3I CGTCTC 2 cut(s) 954, 1098
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 133, 384, 537, 1090
FaqI GGGAC 1 cut(s) 896
FatI CATG 1 cut(s) 7
FauI CCCGC 5 cut(s) 241, 883, 928, 935, 1016
FbaI TGATCA 2 cut(s) 438, 775
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 8 cut(s) 28, 327, 647, 699, 718, 721, 724, 727
FokI GGATG 5 cut(s) 530, 920, 964, 968, 1130
Fsp4HI GCNGC 8 cut(s) 28, 327, 647, 699, 718, 721, 724, 727
FspBI CTAG 3 cut(s) 215, 606, 855
GlaI GCGC 4 cut(s) 57, 126, 309, 918
GluI GCNGC 8 cut(s) 28, 327, 647, 699, 718, 721, 724, 727
HaeIII GGCC 3 cut(s) 99, 104, 997
HapII CCGG 5 cut(s) 100, 434, 518, 812, 1077
HhaI GCGC 4 cut(s) 58, 127, 310, 919
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 4 cut(s) 56, 125, 308, 917
HinP1I GCGC 4 cut(s) 56, 125, 308, 917
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 6 cut(s) 37, 164, 176, 260, 302, 640
HpaII CCGG 5 cut(s) 100, 434, 518, 812, 1077
HphI GGTGA 3 cut(s) 448, 680, 946
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 5 cut(s) 153, 200, 865, 1019, 1051
Hpy188III TCNNGA 4 cut(s) 584, 684, 986, 1077
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 3 cut(s) 613, 1056, 1063
HpyCH4III ACNGT 3 cut(s) 23, 115, 1155
HpyCH4V TGCA 7 cut(s) 350, 413, 646, 663, 698, 740, 1063
HpyF3I CTNAG 4 cut(s) 624, 638, 1148, 1182
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 4 cut(s) 56, 125, 308, 917
Kpn2I TCCGGA 1 cut(s) 1076
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 2 cut(s) 438, 775
Kzo9I GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
LmnI GCTCC 2 cut(s) 83, 490
Lsp1109I GCAGC 6 cut(s) 39, 313, 658, 710, 732, 735
LweI GCATC 4 cut(s) 4, 43, 727, 898
MaeI CTAG 3 cut(s) 215, 606, 855
MaeIII GTNAC 1 cut(s) 209
MalI GATC 7 cut(s) 404, 440, 458, 531, 579, 596, 777
MboI GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
MboII GAAGA 9 cut(s) 232, 410, 583, 599, 888, 974, 1039, 1092, 1138
MfeI CAATTG 1 cut(s) 508
MflI RGATCY 1 cut(s) 402
MluCI AATT 4 cut(s) 452, 463, 508, 1006
MlyI GAGTC 3 cut(s) 173, 311, 649
MmeI TCCRAC 1 cut(s) 270
MroI TCCGGA 1 cut(s) 1076
MroNI GCCGGC 1 cut(s) 517
MslI CAYNNNNRTG 3 cut(s) 12, 207, 556
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 5 cut(s) 100, 434, 518, 812, 1077
MspR9I CCNGG 3 cut(s) 101, 813, 994
MunI CAATTG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 994
NaeI GCCGGC 1 cut(s) 519
NciI CCSGG 2 cut(s) 101, 813
NcoI CCATGG 1 cut(s) 7
NdeII GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 486, 1075
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 209
OliI CACNNNNGTG 2 cut(s) 207, 556
PaeR7I CTCGAG 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 1104
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 3 cut(s) 37, 176, 260
PkrI GCNGC 8 cut(s) 29, 328, 648, 700, 719, 722, 725, 728
PleI GAGTC 3 cut(s) 172, 310, 648
PpsI GAGTC 3 cut(s) 172, 310, 648
Psp6I CCWGG 1 cut(s) 992
PspGI CCWGG 1 cut(s) 992
PspN4I GGNNCC 2 cut(s) 486, 1075
PspPI GGNCC 1 cut(s) 102
PstI CTGCAG 2 cut(s) 648, 700
PsuI RGATCY 1 cut(s) 402
RseI CAYNNNNRTG 3 cut(s) 12, 207, 556
SalI GTCGAC 1 cut(s) 109
SatI GCNGC 8 cut(s) 28, 327, 647, 699, 718, 721, 724, 727
Sau3AI GATC 7 cut(s) 402, 438, 456, 529, 577, 594, 775
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 3 cut(s) 173, 311, 649
ScrFI CCNGG 3 cut(s) 101, 813, 994
SfaNI GCATC 4 cut(s) 4, 43, 727, 898
SfcI CTRYAG 2 cut(s) 644, 696
Sfr274I CTCGAG 1 cut(s) 582
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 3 cut(s) 12, 207, 556
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 4 cut(s) 452, 463, 508, 1006
SspMI CTAG 3 cut(s) 215, 606, 855
StyD4I CCNGG 3 cut(s) 99, 811, 992
StyI CCWWGG 4 cut(s) 7, 59, 214, 425
TaaI ACNGT 3 cut(s) 23, 115, 1155
TaqI TCGA 6 cut(s) 110, 378, 468, 583, 597, 1157
TaqII GACCGA 1 cut(s) 590
TasI AATT 4 cut(s) 452, 463, 508, 1006
TauI GCSGC 2 cut(s) 720, 729
TfiI GAWTC 3 cut(s) 37, 176, 260
TscAI CASTG 2 cut(s) 708, 1008
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 6 cut(s) 27, 326, 646, 698, 720, 723
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 197, 463
TspRI CASTG 2 cut(s) 708, 1008
XapI RAATTY 2 cut(s) 463, 1006
XhoI CTCGAG 1 cut(s) 582
XmaJI CCTAGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 110
XspI CTAG 3 cut(s) 215, 606, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.