Rroxscaffold_6G00411140

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011784
Physical Location & Seq
Forward (+)
33681532 .. 33682689
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411140.1

Sequence Viewer

Length: 1158 bp
ATGAGCCATGGAGATGGGGAAAGTAGCAGAGTGAATGATTCCGGCGATGCGGCCCGAAGAGCACAACCGGGAGCTGATGAGTTTGGGCGGGCGGTTTCGAAGGTCGCCGTGGCGCAGATATGTGAGGGCGTGGGGTTTCTGGGCATCAAGGAGTCGGCTTTGGACTCCCTCGCTGACATTGCCATCAGATACCTCCGTGACTTAGGAAAGATGGCCAATTATTATGCTAACTTGGCCGGTAGGACTGAATCTAATGTGTTTGATGTTGTTAGAGGGTTGGAAGATTTGGAGTCATTGCAAGGGTTTTCGGGTGCCACGGATGTTACACATTGTCTAGCCGGGTCGGGGACGATGAAGGGGCTTGTTCAGTATGTGGGTACTGCGGAGGAGATTCCGTTTGCTCAGCCGTTGCCTAGGTTTCCGGTGGTGAAGGATCAGAGGTTAATTCCGAGTTTTGAGCAGATGGGGGAAGCTATGCCTGGCAAGCATTTGCCGAATTGGTTGCCGGCTTTCCCTGATCCACACACTTACATTCACTCACCAATGTGGAATGAGAGGAAGACAGATCCTCGCGAAGATAAGATTGAGCAAGCCAGGCAGCGGAGAAAGGCTGAGAGGTCTTTGTTGAGTCTGCAGCAGAGGTTGCTCTGCAATGGTTCATCTCCGGGTTTAGCTTCAACCTCTGTCGCAGTCTCGGTGGTGGCGGTGGGTGGTGGTAATGATGGGAAGGGATTACAATTACAAGGGAGTGAAAGTAATCCCTTCCTTGAACCACCACTCCAGCCGGGCGAGAAAGATGTGTCTCCAGTTGTCTTACCATCAAAGCTTTCAGATGAATCGGCCAAAGGGAACCGTTCTTCTTCAGTTTTAGAGGCATTTGCCCCTGCCATTCAAGCTGTGAAAAATGGGATATGGATGGATGGAGAGGGAGAGGAAGAGAGGAGGCTACTTCCGAATTCAAGGCCCCCTGTTCATTTAAATTTCAGACCTGTGAAGAAATTTCTTGGCGAATCATCGGATTTCAGCCTCCTAAAGAAGGGTTCAGGGAGACCAGCAAATTGGGTTTTGCGAGATGAAGAAAGGGATGAAAAGAAGAGGAGAGCTGAGTTTATTCTTAGACAATCCATGGAAAACCCACAGGAACTCAATCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

385

Amino Acids

42.07

Weight (kDa)

5.99

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 27 - 96 1.8e-19 Bromodomain associated
TAF8_C PF10406 163 - 211 3.3e-19 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 573
AciI CCGC 6 cut(s) 50, 88, 92, 383, 601, 704
AclWI GGATC 3 cut(s) 441, 512, 560
AcoI YGGCCR 3 cut(s) 213, 234, 840
AcsI RAATTY 3 cut(s) 955, 979, 998
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 3 cut(s) 345, 600, 1036
AgsI TTSAA 4 cut(s) 678, 770, 893, 960
AjnI CCWGG 2 cut(s) 478, 593
AleI CACNNNNGTG 1 cut(s) 544
AloI GAACNNNNNNTCC 2 cut(s) 762, 794
AluBI AGCT 6 cut(s) 74, 473, 674, 826, 896, 1103
AluI AGCT 6 cut(s) 74, 473, 674, 826, 896, 1103
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 3 cut(s) 697, 807, 1042
AlwI GGATC 3 cut(s) 441, 512, 560
AoxI GGCC 5 cut(s) 51, 213, 234, 840, 962
ApeKI GCWGC 2 cut(s) 598, 634
ApoI RAATTY 3 cut(s) 955, 979, 998
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 52, 963
AsuC2I CCSGG 4 cut(s) 69, 340, 666, 786
AsuHPI GGTGA 2 cut(s) 439, 531
AsuII TTCGAA 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 610, 646
BccI CCATC 8 cut(s) 8, 191, 205, 457, 716, 826, 910, 914
BceAI ACGGC 2 cut(s) 92, 391
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 2 cut(s) 480, 595
BcnI CCSGG 4 cut(s) 69, 340, 666, 786
BcoDI GTCTC 3 cut(s) 697, 807, 1042
BfaI CTAG 2 cut(s) 335, 414
BfmI CTRYAG 1 cut(s) 632
BisI GCNGC 3 cut(s) 51, 599, 635
BlnI CCTAGG 1 cut(s) 413
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 3 cut(s) 52, 600, 636
Bme1390I CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
BmgT120I GGNCC 2 cut(s) 52, 963
BmiI GGNNCC 3 cut(s) 313, 851, 965
BmrFI CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
BmsI GCATC 2 cut(s) 37, 153
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 2 cut(s) 764, 789
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 98
BpuMI CCSGG 4 cut(s) 69, 340, 666, 786
BsaI GGTCTC 1 cut(s) 1042
BsaJI CCNNGG 5 cut(s) 7, 108, 315, 413, 1125
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 6 cut(s) 380, 410, 739, 762, 769, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 600, 1036
Bse118I RCCGGY 2 cut(s) 236, 505
Bse1I ACTGG 1 cut(s) 806
Bse3DI GCAATG 3 cut(s) 177, 293, 658
BseBI CCWGG 2 cut(s) 480, 595
BseDI CCNNGG 5 cut(s) 7, 108, 315, 413, 1125
BseGI GGATG 4 cut(s) 325, 921, 925, 1090
BseLI CCNNNNNNNGG 3 cut(s) 345, 600, 1036
BseMI GCAATG 3 cut(s) 177, 293, 658
BseMII CTCAG 3 cut(s) 416, 603, 1095
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 3 cut(s) 401, 955, 1111
BseXI GCAGC 2 cut(s) 610, 646
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 5 cut(s) 53, 215, 236, 842, 964
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 8 cut(s) 42, 68, 237, 339, 422, 506, 665, 785
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 3 cut(s) 345, 600, 1036
BsmAI GTCTC 3 cut(s) 697, 807, 1042
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 5 cut(s) 53, 215, 236, 842, 964
Bso31I GGTCTC 1 cut(s) 1042
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 433, 517, 565
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp19I CCATGG 2 cut(s) 7, 1125
Bsp68I TCGCGA 1 cut(s) 573
BspACI CCGC 6 cut(s) 50, 88, 92, 383, 601, 704
BspANI GGCC 5 cut(s) 53, 215, 236, 842, 964
BspCNI CTCAG 3 cut(s) 415, 604, 1096
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 313, 851, 965
BspMAI CTGCAG 1 cut(s) 636
BspPI GGATC 3 cut(s) 441, 512, 560
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 1042
BsrDI GCAATG 3 cut(s) 177, 293, 658
BsrFI RCCGGY 2 cut(s) 236, 505
BsrI ACTGG 1 cut(s) 806
BssAI RCCGGY 2 cut(s) 236, 505
BssECI CCNNGG 5 cut(s) 7, 108, 315, 413, 1125
BssMI GATC 3 cut(s) 433, 517, 565
BssT1I CCWWGG 3 cut(s) 7, 413, 1125
Bst2UI CCWGG 2 cut(s) 480, 595
Bst4CI ACNGT 1 cut(s) 854
Bst6I CTCTTC 3 cut(s) 52, 930, 1088
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 90, 485, 507, 591
BstDEI CTNAG 5 cut(s) 202, 402, 612, 1104, 1115
BstDSI CCRYGG 4 cut(s) 7, 108, 315, 1125
BstENI CCTNNNNNAGG 1 cut(s) 1034
BstF5I GGATG 4 cut(s) 325, 921, 925, 1090
BstFNI CGCG 1 cut(s) 573
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 436, 520, 568
BstMAI GTCTC 3 cut(s) 697, 807, 1042
BstMBI GATC 3 cut(s) 433, 517, 565
BstMWI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
BstNI CCWGG 2 cut(s) 480, 595
BstSCI CCNGG 6 cut(s) 67, 338, 478, 593, 664, 784
BstSFI CTRYAG 1 cut(s) 632
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 610, 646
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 2 cut(s) 14, 1059
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 5 cut(s) 53, 215, 236, 842, 964
BtgI CCRYGG 4 cut(s) 7, 108, 315, 1125
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 4 cut(s) 325, 921, 925, 1090
BtuMI TCGCGA 1 cut(s) 573
Cac8I GCNNGC 4 cut(s) 90, 485, 507, 591
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 236, 505
Cfr13I GGNCC 2 cut(s) 52, 963
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 8, 1126
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 5 cut(s) 202, 402, 612, 1104, 1115
DpnI GATC 3 cut(s) 435, 519, 567
DpnII GATC 3 cut(s) 433, 517, 565
DraI TTTAAA 1 cut(s) 978
EaeI YGGCCR 3 cut(s) 213, 234, 840
Eam1104I CTCTTC 3 cut(s) 52, 930, 1088
EarI CTCTTC 3 cut(s) 52, 930, 1088
Eco130I CCWWGG 3 cut(s) 7, 413, 1125
Eco31I GGTCTC 1 cut(s) 1042
Eco57I CTGAAG 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 1034
EcoO109I RGGNCCY 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 2 cut(s) 478, 593
EcoT14I CCWWGG 3 cut(s) 7, 413, 1125
ErhI CCWWGG 3 cut(s) 7, 413, 1125
FaeI CATG 2 cut(s) 11, 1129
FaiI YATR 8 cut(s) 9, 121, 225, 372, 476, 913, 1127, 1156
FaqI GGGAC 1 cut(s) 361
FatI CATG 2 cut(s) 7, 1125
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 51, 599, 635
FokI GGATG 4 cut(s) 332, 928, 932, 1097
Fsp4HI GCNGC 3 cut(s) 51, 599, 635
FspBI CTAG 2 cut(s) 335, 414
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 51, 599, 635
GsuI CTGGAG 2 cut(s) 764, 789
HaeIII GGCC 5 cut(s) 53, 215, 236, 842, 964
HapII CCGG 8 cut(s) 42, 68, 237, 339, 422, 506, 665, 785
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 11, 1129
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 9 cut(s) 38, 152, 164, 248, 290, 391, 628, 836, 1010
HpaII CCGG 8 cut(s) 42, 68, 237, 339, 422, 506, 665, 785
HphI GGTGA 2 cut(s) 439, 531
Hpy188I TCNGA 7 cut(s) 188, 438, 450, 832, 954, 986, 1018
Hpy188III TCNNGA 1 cut(s) 572
HpyAV CCTTC 6 cut(s) 94, 349, 424, 721, 772, 1030
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4V TGCA 3 cut(s) 298, 634, 651
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
HpyF3I CTNAG 5 cut(s) 202, 402, 612, 1104, 1115
Hsp92II CATG 2 cut(s) 11, 1129
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 433, 517, 565
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 610, 646
LweI GCATC 2 cut(s) 37, 153
MaeI CTAG 2 cut(s) 335, 414
MaeIII GTNAC 2 cut(s) 197, 322
MalI GATC 3 cut(s) 435, 519, 567
MboI GATC 3 cut(s) 433, 517, 565
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 8 cut(s) 217, 444, 496, 737, 955, 979, 998, 1057
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 4 cut(s) 158, 161, 299, 637
MmeI TCCRAC 1 cut(s) 258
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 505
MscI TGGCCA 1 cut(s) 215
MseI TTAA 2 cut(s) 443, 977
MslI CAYNNNNRTG 2 cut(s) 12, 544
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 8 cut(s) 42, 68, 237, 339, 422, 506, 665, 785
MspR9I CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
MvaI CCWGG 2 cut(s) 480, 595
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
NaeI GCCGGC 1 cut(s) 507
NciI CCSGG 4 cut(s) 69, 340, 666, 786
NcoI CCATGG 2 cut(s) 7, 1125
NdeII GATC 3 cut(s) 433, 517, 565
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 2 cut(s) 11, 1129
NlaIV GGNNCC 3 cut(s) 313, 851, 965
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 1 cut(s) 573
NspV TTCGAA 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 507
PfeI GAWTC 5 cut(s) 38, 248, 391, 836, 1010
PkrI GCNGC 3 cut(s) 52, 600, 636
PleI GAGTC 4 cut(s) 158, 160, 298, 636
PpsI GAGTC 4 cut(s) 158, 160, 298, 636
Psp6I CCWGG 2 cut(s) 478, 593
PspGI CCWGG 2 cut(s) 478, 593
PspN4I GGNNCC 3 cut(s) 313, 851, 965
PspPI GGNCC 2 cut(s) 52, 963
PstI CTGCAG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 565
RruI TCGCGA 1 cut(s) 573
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 2 cut(s) 12, 544
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 443, 977
SatI GCNGC 3 cut(s) 51, 599, 635
Sau3AI GATC 3 cut(s) 433, 517, 565
Sau96I GGNCC 2 cut(s) 52, 963
SchI GAGTC 4 cut(s) 158, 161, 299, 637
ScrFI CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 37, 153
SfcI CTRYAG 1 cut(s) 632
SfuI TTCGAA 1 cut(s) 98
SmiI ATTTAAAT 1 cut(s) 978
SmiMI CAYNNNNRTG 2 cut(s) 12, 544
Sse9I AATT 8 cut(s) 217, 444, 496, 737, 955, 979, 998, 1057
SsiI CCGC 6 cut(s) 50, 88, 92, 383, 601, 704
SspMI CTAG 2 cut(s) 335, 414
StyD4I CCNGG 6 cut(s) 67, 338, 478, 593, 664, 784
StyI CCWWGG 3 cut(s) 7, 413, 1125
SwaI ATTTAAAT 1 cut(s) 978
TaaI ACNGT 1 cut(s) 854
TaqI TCGA 1 cut(s) 98
TasI AATT 8 cut(s) 217, 444, 496, 737, 955, 979, 998, 1057
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 5 cut(s) 38, 248, 391, 836, 1010
Tru1I TTAA 2 cut(s) 443, 977
Tru9I TTAA 2 cut(s) 443, 977
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 598, 634
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 6 cut(s) 368, 648, 849, 962, 1089, 1101
TspGWI ACGGA 3 cut(s) 185, 332, 384
XagI CCTNNNNNAGG 1 cut(s) 1034
XapI RAATTY 3 cut(s) 955, 979, 998
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 2 cut(s) 335, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.