Rmu_co8416013.1_g000001

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416013.1
OG0011784
Physical Location & Seq
Reverse (-)
1 .. 956
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416013.1_g000001.1.cds

Sequence Viewer

Length: 909 bp
atgagccatggagatggggaaagtagcagagtgaatgattccggcgatgcggcccgaagagcacaaccgggagctgatgagtttgggcgggcggtttcgaaggtcgccgtggcgcagatatgtgaaggcgtggggtttctgggcatcaaggagtcggctttggactccctcgctgacattgccatcagatacctccgtgacttaggaaagatggccaattattatgctaacttggccggtaggactgaatctaatgtgtttgatgttgttagagggttcgaagatttggagtcattgcaagggttttcgggtgccgcggatgttacacattgtctagccgggtcggggacgatgaagggacttgttcagtatgtgggtactgcggaggagaatccgtttgctcagccgttgcctaggtttccggtggtgaaggatcggaggttaattccgagttttgagcagatgggggaagcttcgcccggcaagcatttgccgaattggttgccggctttccctgatccacacacttacattcactcaccaatgtggaatgagaggaagacagatcctcgcgaagataagattgagcaagccaggcagcggagaaaggctgagaggtctttgttgagtctgcagcagaggttgctctgcaatggttcatctccgggtttagcctcaacctctgtcccagtctcggtggtggcggtggatggtggtaatgatgggaagggattgcaattgcaagggagtgaaagtaatcccttccttgaaccaccactccagccgggcgagaaagatgtgtctccagttgtcttaccatcaaagctttcagatgaatcggccaaagggaaccgttcttcttcagttttagaggcatttgcccctgccattcaagcagtgaaaaatggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

303

Amino Acids

32.47

Weight (kDa)

5.65

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 2 cut(s) 317, 573
AciI CCGC 8 cut(s) 50, 88, 92, 315, 317, 383, 601, 704
AclWI GGATC 3 cut(s) 441, 512, 560
AcoI YGGCCR 3 cut(s) 213, 234, 840
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 3 cut(s) 345, 600, 694
AgsI TTSAA 2 cut(s) 770, 893
AjnI CCWGG 1 cut(s) 593
AleI CACNNNNGTG 1 cut(s) 544
AloI GAACNNNNNNTCC 2 cut(s) 762, 794
AluBI AGCT 3 cut(s) 74, 473, 826
AluI AGCT 3 cut(s) 74, 473, 826
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 2 cut(s) 697, 807
AlwI GGATC 3 cut(s) 441, 512, 560
AoxI GGCC 4 cut(s) 51, 213, 234, 840
ApeKI GCWGC 2 cut(s) 598, 634
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 5 cut(s) 69, 340, 480, 666, 786
AsuHPI GGTGA 2 cut(s) 439, 531
AsuII TTCGAA 2 cut(s) 98, 279
AvrII CCTAGG 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 610, 646
BccI CCATC 7 cut(s) 8, 191, 205, 457, 704, 716, 826
BceAI ACGGC 2 cut(s) 92, 391
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 1 cut(s) 595
BcnI CCSGG 5 cut(s) 69, 340, 480, 666, 786
BcoDI GTCTC 2 cut(s) 697, 807
BfaI CTAG 2 cut(s) 335, 414
BfmI CTRYAG 1 cut(s) 632
BisI GCNGC 4 cut(s) 51, 315, 599, 635
BlnI CCTAGG 1 cut(s) 413
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 4 cut(s) 52, 316, 600, 636
Bme1390I CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 313, 851
BmrFI CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 2 cut(s) 37, 153
BmuI ACTGGG 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 566
BpmI CTGGAG 2 cut(s) 764, 789
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 2 cut(s) 98, 279
BpuMI CCSGG 5 cut(s) 69, 340, 480, 666, 786
BsaJI CCNNGG 4 cut(s) 7, 108, 315, 413
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 6 cut(s) 380, 410, 739, 762, 769, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 600, 694
Bse118I RCCGGY 2 cut(s) 236, 505
Bse1I ACTGG 2 cut(s) 689, 806
Bse3DI GCAATG 3 cut(s) 177, 293, 658
BseBI CCWGG 1 cut(s) 595
BseDI CCNNGG 4 cut(s) 7, 108, 315, 413
BseGI GGATG 2 cut(s) 325, 715
BseLI CCNNNNNNNGG 3 cut(s) 345, 600, 694
BseMI GCAATG 3 cut(s) 177, 293, 658
BseMII CTCAG 2 cut(s) 416, 603
BseNI ACTGG 2 cut(s) 689, 806
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 610, 646
Bsh1236I CGCG 2 cut(s) 317, 573
BshFI GGCC 4 cut(s) 53, 215, 236, 842
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 9 cut(s) 42, 68, 237, 339, 422, 480, 506, 665, 785
BslFI GGGAC 3 cut(s) 361, 372, 671
BslI CCNNNNNNNGG 3 cut(s) 345, 600, 694
BsmAI GTCTC 2 cut(s) 697, 807
BsmFI GGGAC 3 cut(s) 361, 372, 671
BsnI GGCC 4 cut(s) 53, 215, 236, 842
Bsp119I TTCGAA 2 cut(s) 98, 279
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 433, 517, 565
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp19I CCATGG 1 cut(s) 7
Bsp68I TCGCGA 1 cut(s) 573
BspACI CCGC 8 cut(s) 50, 88, 92, 315, 317, 383, 601, 704
BspANI GGCC 4 cut(s) 53, 215, 236, 842
BspCNI CTCAG 2 cut(s) 415, 604
BspFNI CGCG 2 cut(s) 317, 573
BspLI GGNNCC 2 cut(s) 313, 851
BspMAI CTGCAG 1 cut(s) 636
BspPI GGATC 3 cut(s) 441, 512, 560
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 2 cut(s) 98, 279
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 3 cut(s) 177, 293, 658
BsrFI RCCGGY 2 cut(s) 236, 505
BsrI ACTGG 2 cut(s) 689, 806
BssAI RCCGGY 2 cut(s) 236, 505
BssECI CCNNGG 4 cut(s) 7, 108, 315, 413
BssMI GATC 3 cut(s) 433, 517, 565
BssT1I CCWWGG 2 cut(s) 7, 413
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 1 cut(s) 854
Bst6I CTCTTC 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBI TTCGAA 2 cut(s) 98, 279
BstC8I GCNNGC 4 cut(s) 90, 485, 507, 591
BstDEI CTNAG 3 cut(s) 202, 402, 612
BstDSI CCRYGG 3 cut(s) 7, 108, 315
BstF5I GGATG 2 cut(s) 325, 715
BstFNI CGCG 2 cut(s) 317, 573
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 436, 520, 568
BstMAI GTCTC 2 cut(s) 697, 807
BstMBI GATC 3 cut(s) 433, 517, 565
BstMWI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
BstNI CCWGG 1 cut(s) 595
BstSCI CCNGG 6 cut(s) 67, 338, 478, 593, 664, 784
BstSFI CTRYAG 1 cut(s) 632
BstUI CGCG 2 cut(s) 317, 573
BstV1I GCAGC 2 cut(s) 610, 646
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 4 cut(s) 53, 215, 236, 842
BtgI CCRYGG 3 cut(s) 7, 108, 315
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 325, 715
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 1 cut(s) 903
BtuMI TCGCGA 1 cut(s) 573
Cac8I GCNNGC 4 cut(s) 90, 485, 507, 591
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 236, 505
Cfr13I GGNCC 1 cut(s) 52
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 1 cut(s) 378
CviAII CATG 1 cut(s) 8
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 3 cut(s) 202, 402, 612
DpnI GATC 3 cut(s) 435, 519, 567
DpnII GATC 3 cut(s) 433, 517, 565
EaeI YGGCCR 3 cut(s) 213, 234, 840
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 7, 413
Eco57I CTGAAG 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 7, 413
ErhI CCWWGG 2 cut(s) 7, 413
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 121, 225, 372
FaqI GGGAC 3 cut(s) 361, 372, 671
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 51, 315, 599, 635
FokI GGATG 2 cut(s) 332, 722
Fsp4HI GCNGC 4 cut(s) 51, 315, 599, 635
FspBI CTAG 2 cut(s) 335, 414
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 51, 315, 599, 635
GsuI CTGGAG 2 cut(s) 764, 789
HaeIII GGCC 4 cut(s) 53, 215, 236, 842
HapII CCGG 9 cut(s) 42, 68, 237, 339, 422, 480, 506, 665, 785
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 2 cut(s) 471, 824
HinfI GANTC 8 cut(s) 38, 152, 164, 248, 290, 391, 628, 836
HpaII CCGG 9 cut(s) 42, 68, 237, 339, 422, 480, 506, 665, 785
HphI GGTGA 2 cut(s) 439, 531
Hpy188I TCNGA 4 cut(s) 188, 438, 450, 832
Hpy188III TCNNGA 1 cut(s) 572
HpyAV CCTTC 6 cut(s) 94, 119, 349, 424, 721, 772
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4V TGCA 5 cut(s) 298, 634, 651, 736, 742
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
HpyF3I CTNAG 3 cut(s) 202, 402, 612
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 3 cut(s) 433, 517, 565
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 610, 646
LweI GCATC 2 cut(s) 37, 153
MaeI CTAG 2 cut(s) 335, 414
MaeIII GTNAC 2 cut(s) 197, 322
MalI GATC 3 cut(s) 435, 519, 567
MboI GATC 3 cut(s) 433, 517, 565
MboII GAAGA 6 cut(s) 69, 293, 571, 587, 849, 852
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 4 cut(s) 217, 444, 496, 737
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 4 cut(s) 158, 161, 299, 637
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 505
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 2 cut(s) 12, 544
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 2 cut(s) 317, 601
MspI CCGG 9 cut(s) 42, 68, 237, 339, 422, 480, 506, 665, 785
MspR9I CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
MunI CAATTG 1 cut(s) 737
MvaI CCWGG 1 cut(s) 595
MvnI CGCG 2 cut(s) 317, 573
MwoI GCNNNNNNNGC 7 cut(s) 59, 179, 233, 484, 595, 643, 893
NaeI GCCGGC 1 cut(s) 507
NciI CCSGG 5 cut(s) 69, 340, 480, 666, 786
NcoI CCATGG 1 cut(s) 7
NdeII GATC 3 cut(s) 433, 517, 565
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 313, 851
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 1 cut(s) 573
NspV TTCGAA 2 cut(s) 98, 279
OliI CACNNNNGTG 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 38, 248, 391, 836
PkrI GCNGC 4 cut(s) 52, 316, 600, 636
PleI GAGTC 4 cut(s) 158, 160, 298, 636
PpsI GAGTC 4 cut(s) 158, 160, 298, 636
Psp6I CCWGG 1 cut(s) 593
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 313, 851
PspPI GGNCC 1 cut(s) 52
PstI CTGCAG 1 cut(s) 636
PsuI RGATCY 1 cut(s) 565
RruI TCGCGA 1 cut(s) 573
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 2 cut(s) 12, 544
SacII CCGCGG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 4 cut(s) 51, 315, 599, 635
Sau3AI GATC 3 cut(s) 433, 517, 565
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 4 cut(s) 158, 161, 299, 637
ScrFI CCNGG 6 cut(s) 69, 340, 480, 595, 666, 786
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 37, 153
SfcI CTRYAG 1 cut(s) 632
Sfr303I CCGCGG 1 cut(s) 318
SfuI TTCGAA 2 cut(s) 98, 279
SgrBI CCGCGG 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 12, 544
Sse9I AATT 4 cut(s) 217, 444, 496, 737
SsiI CCGC 8 cut(s) 50, 88, 92, 315, 317, 383, 601, 704
SspMI CTAG 2 cut(s) 335, 414
StyD4I CCNGG 6 cut(s) 67, 338, 478, 593, 664, 784
StyI CCWWGG 2 cut(s) 7, 413
TaaI ACNGT 1 cut(s) 854
TaqI TCGA 2 cut(s) 98, 279
TasI AATT 4 cut(s) 217, 444, 496, 737
TauI GCSGC 2 cut(s) 53, 317
TfiI GAWTC 4 cut(s) 38, 248, 391, 836
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 598, 634
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 368, 648, 849
TspGWI ACGGA 2 cut(s) 185, 384
TspRI CASTG 1 cut(s) 903
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 2 cut(s) 335, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.