FvH4_6g16290

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011784
Physical Location & Seq
Reverse (-)
10247546 .. 10248718
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16290.t1

Sequence Viewer

Length: 1173 bp
ATGAGCCATGGAGATGCGGAAAGTAGCAGAGTGAATGAATCCGGTAGCGGCGAGGACGACGCGCCCAGAAGAGCACAGCAGCTGTCAGGTGGAGGAGGTGATGAGTTTGGGCGGGCGGTCTCGAAGGTTGCGGTGGCGCAGATATGCGAGGGGGTCGGGTTTCTTGGCTGCAAGGAGTCGGCTTTGGACTCGCTCGCCGACATTGCCATCAGATACCTCCGTGACTTAGGGAAGATGGCGAATTACTATGCTAACTTGGCCGGTAGGACTGAATCTAATGTGTTTGATGTTGTTAGAGGGTTGGAAGATTTGGAGGCTTCGCAAGGGTTTTCGGGTGCAGCGGAGGTGAGGCATTGTCTTGCGGGGTCCGGGACGATGAAGGGGCTTGTTCAGTATGTGGGGACTGCGGAGGAGATTCCGTTTGCTCAGTCATTGCCGCGGTTTCCGGTGGTGAAGGATCGGAGGTTGATTCTGAGTTTTGAGCGGATGGGGGAGGCTCCGCCTGGGAAGCATTTGCCAAATTGGTTGCCGGCTTTCCCTGATCCGCATACTTACATTCACTCGCCAATGTGGAATGAGAGGAAGACGGATCCTCGGGAAGATAAGATTGAGCAAGCCAGGCAGCGGAGAAAGGCTGAGAGGTCTTTGTTGAGTCTGCAGCAGAGGTTGCTTTGCAATGGTTCAGCTCCAGGTTTAGCTTCACCCTCTGCCCCAGTCTCAGTGGTGGGTAATGATGGGAAGGGATTGAAATTACAAGGGGGTGAAAGTAATCCCTTCCTTGAACCACCCCTCCAGCCGGGTGAGAAAGATGTTTCTCCAGTTGTGTTACCATCAAAGTTTTCAGAAGTTTTGGCCAAAGGGAACAGTTCTTCAGTTTTAGAAGCATTTGCCCCTGCCATCCAAGCGGTGAAAAATGGGGTATGGATGGATGGAGAGGGAGATGTAGAGGAAGAGAGTAAGCTACTTCCGAATTCAAGGCCCCCTGTTCATTTAAAATTCAGACCTGTGAAGAAATTTCTTGGCGAATCATCGGATTTGAGTCTCCAAAAGAAGGGTTCAGGGAGACCAGCAAATTGGGTTTTGCGAGATGAAGAGAGGGACGAAAAGAAGAGGAGAGCTGAGTTTATTCTTAGACAATCCATGCAAAACCCTCAGGAGCTCAATCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

391

Amino Acids

42.51

Weight (kDa)

6.37

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 35 - 105 2.7e-19 Bromodomain associated
TAF8_C PF10406 171 - 219 3.3e-19 Transcription factor TFIID complex subunit 8 C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 484
AccII CGCG 2 cut(s) 62, 439
AclWI GGATC 4 cut(s) 465, 536, 584, 597
AcoI YGGCCR 2 cut(s) 258, 852
AcsI RAATTY 3 cut(s) 970, 995, 1013
AcuI CTGAAG 1 cut(s) 855
AfiI CCNNNNNNNGG 3 cut(s) 624, 796, 1051
AgsI TTSAA 3 cut(s) 748, 782, 975
AjnI CCWGG 3 cut(s) 502, 617, 688
AloI GAACNNNNNNTCC 2 cut(s) 774, 806
AluBI AGCT 6 cut(s) 82, 686, 698, 961, 1118, 1159
AluI AGCT 6 cut(s) 82, 686, 698, 961, 1118, 1159
Alw21I GWGCWC 2 cut(s) 76, 1161
Alw26I GTCTC 4 cut(s) 124, 721, 1046, 1057
AlwI GGATC 4 cut(s) 465, 536, 584, 597
AlwNI CAGNNNCTG 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 594
AoxI GGCC 3 cut(s) 258, 852, 977
ApeKI GCWGC 5 cut(s) 79, 168, 338, 622, 658
ApoI RAATTY 3 cut(s) 970, 995, 1013
AspLEI GCGC 2 cut(s) 64, 139
AspS9I GGNCC 2 cut(s) 366, 978
AsuC2I CCSGG 2 cut(s) 370, 798
AsuHPI GGTGA 7 cut(s) 110, 358, 463, 693, 773, 812, 919
AvaI CYCGRG 1 cut(s) 594
AvaII GGWCC 1 cut(s) 366
AxyI CCTNAGG 1 cut(s) 1152
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BalI TGGCCA 1 cut(s) 854
BamHI GGATCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 2 cut(s) 76, 1161
BbvI GCAGC 5 cut(s) 91, 155, 350, 634, 670
BccI CCATC 8 cut(s) 215, 229, 481, 728, 838, 905, 919, 923
BciT130I CCWGG 3 cut(s) 504, 619, 690
BcnI CCSGG 2 cut(s) 370, 798
BcoDI GTCTC 4 cut(s) 124, 721, 1046, 1057
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 7 cut(s) 49, 80, 169, 339, 437, 623, 659
BlsI GCNGC 7 cut(s) 50, 81, 170, 340, 438, 624, 660
Bme1390I CCNGG 5 cut(s) 370, 504, 619, 690, 798
Bme18I GGWCC 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 594
BmgT120I GGNCC 2 cut(s) 366, 978
BmiI GGNNCC 4 cut(s) 367, 498, 591, 980
BmrFI CCNGG 5 cut(s) 370, 504, 619, 690, 798
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 3 cut(s) 672, 776, 801
BpuMI CCSGG 2 cut(s) 370, 798
BsaI GGTCTC 2 cut(s) 124, 1057
BsaJI CCNNGG 4 cut(s) 7, 437, 503, 593
BsaWI WCCGGW 2 cut(s) 41, 445
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 774, 804
Bsc4I CCNNNNNNNGG 3 cut(s) 624, 796, 1051
Bse118I RCCGGY 2 cut(s) 260, 529
Bse1I ACTGG 2 cut(s) 713, 818
Bse21I CCTNAGG 1 cut(s) 1152
Bse3DI GCAATG 3 cut(s) 201, 431, 682
BseBI CCWGG 3 cut(s) 504, 619, 690
BseDI CCNNGG 4 cut(s) 7, 437, 503, 593
BseGI GGATG 4 cut(s) 492, 897, 930, 934
BseLI CCNNNNNNNGG 3 cut(s) 624, 796, 1051
BseMI GCAATG 3 cut(s) 201, 431, 682
BseMII CTCAG 6 cut(s) 440, 464, 627, 732, 1110, 1166
BseNI ACTGG 2 cut(s) 713, 818
BseRI GAGGAG 3 cut(s) 108, 425, 1126
BseXI GCAGC 5 cut(s) 91, 155, 350, 634, 670
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 62, 439
BshFI GGCC 3 cut(s) 260, 854, 979
BsiHKAI GWGCWC 2 cut(s) 76, 1161
BsiHKCI CYCGRG 1 cut(s) 594
BsiSI CCGG 6 cut(s) 42, 261, 369, 446, 530, 797
BslFI GGGAC 3 cut(s) 385, 415, 1112
BslI CCNNNNNNNGG 3 cut(s) 624, 796, 1051
BsmAI GTCTC 4 cut(s) 124, 721, 1046, 1057
BsmFI GGGAC 3 cut(s) 385, 415, 1112
BsnI GGCC 3 cut(s) 260, 854, 979
Bso31I GGTCTC 2 cut(s) 124, 1057
BsoBI CYCGRG 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 76, 1161
Bsp143I GATC 3 cut(s) 457, 541, 589
Bsp19I CCATGG 1 cut(s) 7
BspANI GGCC 3 cut(s) 260, 854, 979
BspCNI CTCAG 6 cut(s) 439, 465, 628, 731, 1111, 1165
BspFNI CGCG 2 cut(s) 62, 439
BspLI GGNNCC 4 cut(s) 367, 498, 591, 980
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 4 cut(s) 465, 536, 584, 597
BspQI GCTCTTC 1 cut(s) 64
BspTNI GGTCTC 2 cut(s) 124, 1057
BsrBI CCGCTC 1 cut(s) 484
BsrDI GCAATG 3 cut(s) 201, 431, 682
BsrFI RCCGGY 2 cut(s) 260, 529
BsrI ACTGG 2 cut(s) 713, 818
BssAI RCCGGY 2 cut(s) 260, 529
BssECI CCNNGG 4 cut(s) 7, 437, 503, 593
BssMI GATC 3 cut(s) 457, 541, 589
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 3 cut(s) 504, 619, 690
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 4 cut(s) 64, 945, 1086, 1103
BstAPI GCANNNNNTGC 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 114, 195, 531, 615
BstDEI CTNAG 8 cut(s) 226, 426, 473, 636, 718, 1119, 1130, 1152
BstDSI CCRYGG 2 cut(s) 7, 437
BstF5I GGATG 4 cut(s) 492, 897, 930, 934
BstFNI CGCG 2 cut(s) 62, 439
BstHHI GCGC 2 cut(s) 64, 139
BstKTI GATC 3 cut(s) 460, 544, 592
BstMAI GTCTC 4 cut(s) 124, 721, 1046, 1057
BstMBI GATC 3 cut(s) 457, 541, 589
BstMWI GCNNNNNNNGC 6 cut(s) 203, 257, 508, 619, 667, 902
BstNI CCWGG 3 cut(s) 504, 619, 690
BstSCI CCNGG 5 cut(s) 368, 502, 617, 688, 796
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 2 cut(s) 62, 439
BstV1I GCAGC 5 cut(s) 91, 155, 350, 634, 670
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 1074
BstYI RGATCY 1 cut(s) 589
Bsu36I CCTNAGG 1 cut(s) 1152
BsuRI GGCC 3 cut(s) 260, 854, 979
BtgI CCRYGG 2 cut(s) 7, 437
BtsCI GGATG 4 cut(s) 492, 897, 930, 934
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 4 cut(s) 114, 195, 531, 615
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 2 cut(s) 64, 139
Cfr10I RCCGGY 2 cut(s) 260, 529
Cfr13I GGNCC 2 cut(s) 366, 978
Cfr42I CCGCGG 1 cut(s) 440
CseI GACGC 1 cut(s) 68
CviAII CATG 2 cut(s) 8, 1141
DdeI CTNAG 8 cut(s) 226, 426, 473, 636, 718, 1119, 1130, 1152
DpnI GATC 3 cut(s) 459, 543, 591
DpnII GATC 3 cut(s) 457, 541, 589
DraI TTTAAA 1 cut(s) 993
EaeI YGGCCR 2 cut(s) 258, 852
Eam1104I CTCTTC 4 cut(s) 64, 945, 1086, 1103
EarI CTCTTC 4 cut(s) 64, 945, 1086, 1103
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 1159
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 1161
Eco31I GGTCTC 2 cut(s) 124, 1057
Eco47I GGWCC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 1159
Eco57I CTGAAG 1 cut(s) 855
Eco81I CCTNAGG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 1159
EcoO109I RGGNCCY 1 cut(s) 978
EcoRI GAATTC 1 cut(s) 970
EcoRII CCWGG 3 cut(s) 502, 617, 688
EcoT14I CCWWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 1161
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 2 cut(s) 11, 1144
FaiI YATR 8 cut(s) 9, 145, 249, 396, 549, 922, 1142, 1171
FaqI GGGAC 3 cut(s) 385, 415, 1112
FatI CATG 2 cut(s) 7, 1140
FauI CCCGC 2 cut(s) 105, 355
Fnu4HI GCNGC 7 cut(s) 49, 80, 169, 339, 437, 623, 659
FokI GGATG 4 cut(s) 499, 884, 937, 941
FriOI GRGCYC 1 cut(s) 1161
Fsp4HI GCNGC 7 cut(s) 49, 80, 169, 339, 437, 623, 659
GlaI GCGC 2 cut(s) 63, 138
GluI GCNGC 7 cut(s) 49, 80, 169, 339, 437, 623, 659
GsuI CTGGAG 3 cut(s) 672, 776, 801
HaeIII GGCC 3 cut(s) 260, 854, 979
HapII CCGG 6 cut(s) 42, 261, 369, 446, 530, 797
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 64, 139
Hin1II CATG 2 cut(s) 11, 1144
Hin6I GCGC 2 cut(s) 62, 137
HinP1I GCGC 2 cut(s) 62, 137
HinfI GANTC 9 cut(s) 38, 176, 188, 272, 415, 469, 652, 1025, 1039
HpaII CCGG 6 cut(s) 42, 261, 369, 446, 530, 797
HphI GGTGA 7 cut(s) 110, 358, 463, 693, 773, 812, 919
Hpy188I TCNGA 7 cut(s) 212, 462, 474, 844, 969, 1001, 1033
Hpy188III TCNNGA 3 cut(s) 121, 596, 1154
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 6 cut(s) 118, 373, 448, 733, 784, 1045
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4V TGCA 5 cut(s) 171, 338, 658, 675, 1144
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 257, 508, 619, 667, 902
HpyF3I CTNAG 8 cut(s) 226, 426, 473, 636, 718, 1119, 1130, 1152
Hsp92II CATG 2 cut(s) 11, 1144
HspAI GCGC 2 cut(s) 62, 137
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
KspI CCGCGG 1 cut(s) 440
Kzo9I GATC 3 cut(s) 457, 541, 589
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 3 cut(s) 502, 691, 1156
Lsp1109I GCAGC 5 cut(s) 91, 155, 350, 634, 670
LweI GCATC 1 cut(s) 4
MaeIII GTNAC 2 cut(s) 221, 825
MalI GATC 3 cut(s) 459, 543, 591
MbiI CCGCTC 1 cut(s) 484
MboI GATC 3 cut(s) 457, 541, 589
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 76, 1161
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 7 cut(s) 241, 520, 749, 970, 995, 1013, 1072
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 4 cut(s) 182, 185, 661, 1048
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 854
MroNI GCCGGC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 854
MseI TTAA 1 cut(s) 992
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 854
MspA1I CMGCKG 4 cut(s) 82, 341, 439, 625
MspI CCGG 6 cut(s) 42, 261, 369, 446, 530, 797
MspR9I CCNGG 5 cut(s) 370, 504, 619, 690, 798
MvaI CCWGG 3 cut(s) 504, 619, 690
MvnI CGCG 2 cut(s) 62, 439
MwoI GCNNNNNNNGC 6 cut(s) 203, 257, 508, 619, 667, 902
NaeI GCCGGC 1 cut(s) 531
NciI CCSGG 2 cut(s) 370, 798
NcoI CCATGG 1 cut(s) 7
NdeII GATC 3 cut(s) 457, 541, 589
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 2 cut(s) 11, 1144
NlaIV GGNNCC 4 cut(s) 367, 498, 591, 980
NmuCI GTSAC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 5 cut(s) 38, 272, 415, 469, 1025
PfoI TCCNGGA 1 cut(s) 368
PkrI GCNGC 7 cut(s) 50, 81, 170, 340, 438, 624, 660
PleI GAGTC 4 cut(s) 182, 184, 660, 1047
PpsI GAGTC 4 cut(s) 182, 184, 660, 1047
Psp124BI GAGCTC 1 cut(s) 1161
Psp6I CCWGG 3 cut(s) 502, 617, 688
PspGI CCWGG 3 cut(s) 502, 617, 688
PspN4I GGNNCC 4 cut(s) 367, 498, 591, 980
PspPI GGNCC 2 cut(s) 366, 978
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 1161
SacII CCGCGG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 992
SatI GCNGC 7 cut(s) 49, 80, 169, 339, 437, 623, 659
Sau3AI GATC 3 cut(s) 457, 541, 589
Sau96I GGNCC 2 cut(s) 366, 978
SchI GAGTC 4 cut(s) 182, 185, 661, 1048
ScrFI CCNGG 5 cut(s) 370, 504, 619, 690, 798
SduI GDGCHC 2 cut(s) 76, 1161
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 656
Sfr303I CCGCGG 1 cut(s) 440
SgrBI CCGCGG 1 cut(s) 440
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 7 cut(s) 241, 520, 749, 970, 995, 1013, 1072
SstI GAGCTC 1 cut(s) 1161
StyD4I CCNGG 5 cut(s) 368, 502, 617, 688, 796
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 866
TaqI TCGA 1 cut(s) 122
TasI AATT 7 cut(s) 241, 520, 749, 970, 995, 1013, 1072
TauI GCSGC 2 cut(s) 51, 439
TfiI GAWTC 5 cut(s) 38, 272, 415, 469, 1025
Tru1I TTAA 1 cut(s) 992
Tru9I TTAA 1 cut(s) 992
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 5 cut(s) 79, 168, 338, 622, 658
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 51, 392, 977, 1104
TspGWI ACGGA 3 cut(s) 209, 408, 602
TspRI CASTG 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 3 cut(s) 970, 995, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.