Prupe.6G232600_v2.0.a1

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011784
Physical Location & Seq
Forward (+)
23496516 .. 23497827
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G232600.1

Sequence Viewer

Length: 987 bp
ATGTCGAGCTTTTATGCTAACTTGGCTGGCAGAACCGAATGCAATGTGTTTGATATTATTAGAGGGTCGGAGGATTTGGAGTCACTGCAAGGGTTCTTGGGTGCTGCTGAGGTCAGTCAATGTCTTGCAGGGTCTGGGATAGTGAGAGGCATTGTTGAGTATGTGGGTTCGGCTGAGGAGATCCCATTTGCACAGCCATTGCCTCGGTTTCCGGTGATCAAGCAGCGGAGATTAATTCCGAGTTTCGAGCAAATGGGGGAGGCGCCACAGAGTAAACATTTGCCCAATTGGTTGCCCGCTTTCCCTGATCCACACACTTACATTCAAACACCAATGTGGAATGAGAGGAAGACCGATCCCCGAGAAGATAAAATCGAGCAGGCTAGACAGAGGAGGAAGGCTGAGAGGTCTTTGTTGAGTCTGCAGCAGAGGTTGTTGTGCAACGGTGAGGCATCTGGTTCAGGAGGAGTCTCTGTTGCAGTACCATTGGTTAGTGGTGGTGGTAATGATGGAAAGGGATTATTATTACAAGGGAGTGAGAGTAATCCGAGTAATCCGAGTAATCCAAGTAATCCAATTAATCCATTCCTTGAACCGCCTATCCAGCCGGGAGAGAAAGATGTATCAGTGTCCGAAGTTGTCTTGCCATCCAAGTTTTTGGATGAAGTGGGGCAAGGGAAGAATGGCGGTTCTTCGGTTTTGGATGCGTTTACGCCCGCCATTGAAGCAGTGAAAAATGGGGTGTGGAGTGACGGAGATGATGAGAGGAAGCAGCTTCTTCCAGATACGAGGCCTGCGATTAATTTCAAGTTCAGAAGTGGGAAGAAGTTTCTGGGAGAATCTTCGGATGTGAGGCTGCAAAAGAAGGGTTCTGTGAGACCAGCTTATTGGTTTGGGCGAGATGAGGAGAGGGATGACAAGAAGAGAAGAGCTGAGTTTATTCTTAGACAATCTATGGAAAACCCACAGGAACTCACTCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

329

Amino Acids

36.16

Weight (kDa)

5.72

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 5 cut(s) 226, 297, 596, 687, 717
AclWI GGATC 3 cut(s) 175, 302, 350
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 1 cut(s) 483
AgsI TTSAA 4 cut(s) 326, 593, 725, 808
AleI CACNNNNGTG 1 cut(s) 334
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 4 cut(s) 9, 775, 884, 932
AluI AGCT 4 cut(s) 9, 775, 884, 932
Alw26I GTCTC 2 cut(s) 475, 871
AlwI GGATC 3 cut(s) 175, 302, 350
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 791
ApeKI GCWGC 5 cut(s) 104, 223, 424, 772, 856
AseI ATTAAT 3 cut(s) 233, 579, 801
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 226, 458
AvaI CYCGRG 1 cut(s) 360
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 356
BbvCI CCTCAGC 2 cut(s) 108, 174
BbvI GCAGC 5 cut(s) 91, 235, 436, 784, 843
BccI CCATC 2 cut(s) 503, 655
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 475, 871
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 5 cut(s) 105, 224, 425, 773, 857
BlsI GCNGC 5 cut(s) 106, 225, 426, 774, 858
Bme1390I CCNGG 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 461, 694
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 2 cut(s) 108, 174
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 871
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 4 cut(s) 459, 489, 526, 556
Bse3DI GCAATG 2 cut(s) 49, 197
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 5 cut(s) 647, 667, 709, 853, 919
BseMI GCAATG 2 cut(s) 49, 197
BseMII CTCAG 4 cut(s) 99, 165, 393, 924
BseRI GAGGAG 4 cut(s) 191, 406, 480, 920
BseXI GCAGC 5 cut(s) 91, 235, 436, 784, 843
BshFI GGCC 1 cut(s) 793
BshNI GGYRCC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 212, 608
BsmAI GTCTC 2 cut(s) 475, 871
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 793
Bso31I GGTCTC 1 cut(s) 871
BsoBI CYCGRG 1 cut(s) 360
Bsp143I GATC 4 cut(s) 180, 216, 307, 355
BspACI CCGC 5 cut(s) 226, 297, 596, 687, 717
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 4 cut(s) 100, 166, 394, 925
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 426
BspPI GGATC 3 cut(s) 175, 302, 350
BspQI GCTCTTC 1 cut(s) 922
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 871
BsrDI GCAATG 2 cut(s) 49, 197
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 4 cut(s) 180, 216, 307, 355
BssNI GRCGYC 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 2 cut(s) 917, 922
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 5 cut(s) 28, 297, 381, 717, 795
BstDEI CTNAG 6 cut(s) 108, 174, 402, 933, 944, 978
BstF5I GGATG 5 cut(s) 647, 667, 709, 853, 919
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 183, 219, 310, 358
BstMAI GTCTC 2 cut(s) 475, 871
BstMBI GATC 4 cut(s) 180, 216, 307, 355
BstMWI GCNNNNNNNGC 3 cut(s) 23, 604, 725
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 422
BstV1I GCAGC 5 cut(s) 91, 235, 436, 784, 843
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 2 cut(s) 658, 888
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 1 cut(s) 793
BtsCI GGATG 5 cut(s) 647, 667, 709, 853, 919
BtsI GCAGTG 2 cut(s) 83, 735
BtsIMutI CAGTG 3 cut(s) 83, 633, 735
Cac8I GCNNGC 5 cut(s) 28, 297, 381, 717, 795
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 482
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 6 cut(s) 108, 174, 402, 933, 944, 978
DinI GGCGCC 1 cut(s) 264
DpnI GATC 4 cut(s) 182, 218, 309, 357
DpnII GATC 4 cut(s) 180, 216, 307, 355
Eam1104I CTCTTC 2 cut(s) 917, 922
EarI CTCTTC 2 cut(s) 917, 922
Eco147I AGGCCT 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 360
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
FaiI YATR 3 cut(s) 15, 162, 956
FauI CCCGC 2 cut(s) 304, 724
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 5 cut(s) 105, 224, 425, 773, 857
FokI GGATG 5 cut(s) 634, 674, 716, 860, 926
Fsp4HI GCNGC 5 cut(s) 105, 224, 425, 773, 857
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 264
GluI GCNGC 5 cut(s) 105, 224, 425, 773, 857
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 793
HapII CCGG 2 cut(s) 212, 608
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 263
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 4 cut(s) 80, 418, 468, 839
HpaII CCGG 2 cut(s) 212, 608
HphI GGTGA 2 cut(s) 226, 458
Hpy166II GTNNAC 2 cut(s) 275, 711
Hpy188I TCNGA 7 cut(s) 70, 240, 549, 558, 634, 815, 847
Hpy188III TCNNGA 2 cut(s) 462, 782
Hpy8I GTNNAC 2 cut(s) 275, 711
HpyAV CCTTC 2 cut(s) 391, 859
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 8 cut(s) 42, 88, 128, 191, 424, 441, 479, 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 604, 725
HpyF3I CTNAG 6 cut(s) 108, 174, 402, 933, 944, 978
Hsp92I GRCGYC 1 cut(s) 263
HspAI GCGC 1 cut(s) 263
KasI GGCGCC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 4 cut(s) 180, 216, 307, 355
LguI GCTCTTC 1 cut(s) 922
Lsp1109I GCAGC 5 cut(s) 91, 235, 436, 784, 843
LweI GCATC 2 cut(s) 461, 694
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 81, 749
MalI GATC 4 cut(s) 182, 218, 309, 357
MboI GATC 4 cut(s) 180, 216, 307, 355
MboII GAAGA 9 cut(s) 361, 377, 684, 691, 770, 834, 835, 934, 939
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 1 cut(s) 180
MluCI AATT 4 cut(s) 234, 286, 576, 802
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 3 cut(s) 89, 427, 477
MmeI TCCRAC 1 cut(s) 48
MseI TTAA 3 cut(s) 233, 579, 801
MslI CAYNNNNRTG 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 2 cut(s) 212, 608
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 23, 604, 725
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 1 cut(s) 609
NdeII GATC 4 cut(s) 180, 216, 307, 355
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 81, 749
OliI CACNNNNGTG 1 cut(s) 334
PceI AGGCCT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 794
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 839
PkrI GCNGC 5 cut(s) 106, 225, 426, 774, 858
PleI GAGTC 3 cut(s) 88, 426, 476
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 3 cut(s) 88, 426, 476
PshBI ATTAAT 3 cut(s) 233, 579, 801
PspN4I GGNNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 922
SaqAI TTAA 3 cut(s) 233, 579, 801
SatI GCNGC 5 cut(s) 105, 224, 425, 773, 857
Sau3AI GATC 4 cut(s) 180, 216, 307, 355
SchI GAGTC 3 cut(s) 89, 427, 477
ScrFI CCNGG 1 cut(s) 609
SetI ASST 7 cut(s) 11, 114, 410, 434, 777, 886, 934
SfaNI GCATC 2 cut(s) 461, 694
SfcI CTRYAG 1 cut(s) 422
SfoI GGCGCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 334
Sse9I AATT 4 cut(s) 234, 286, 576, 802
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 5 cut(s) 226, 297, 596, 687, 717
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 3 cut(s) 5, 246, 375
TaqII GACCGA 1 cut(s) 368
TasI AATT 4 cut(s) 234, 286, 576, 802
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 3 cut(s) 233, 579, 801
Tru9I TTAA 3 cut(s) 233, 579, 801
TscAI CASTG 3 cut(s) 90, 633, 735
TseFI GTSAC 2 cut(s) 81, 749
TseI GCWGC 5 cut(s) 104, 223, 424, 772, 856
Tsp45I GTSAC 2 cut(s) 81, 749
TspDTI ATGAA 1 cut(s) 678
TspGWI ACGGA 1 cut(s) 768
TspRI CASTG 3 cut(s) 90, 633, 735
VspI ATTAAT 3 cut(s) 233, 579, 801
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.