Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Forward (+)

16538189 .. 16542024

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGACATATATCCGCTCCTGAAGATGAAACGAGCGATTGAGAAAGCGGAGAAGCAGATCCCTCCTGAGCCACACTGGGGTTTCTGCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACACCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGAGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATCCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCATGTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAGAGGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTTGGTTTAGGTTTGTCGAAACTCTTCCTCGCTGCAGGATCAGAGGTTTTGACACCAGATTGGGAGGCGATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAACATTATCAGAGATTATCTTGAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAATATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACACAAACAAATCCGTACAGTGCTTAAATGAAATGGTTACCAATGCGTTGATGCATATTGAAGATTGCCTGAAATACATGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAGATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGCGTTGTGAAACTGAGGCGAGGTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGGTTGACAAGAACGATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCCGTTCAGAAACTCTGCAGAGACGCTGGAGTTCTTCAAAACAGAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTCTTTATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

410

Amino Acids

47.14

Weight (kDa)

6.18

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	44 - 317	6.1e-53	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1181
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	3 cut(s)	47, 80, 679
AclWI	GGATC	4 cut(s)	85, 571, 836, 1049
AcoI	YGGCCR	2 cut(s)	453, 1200
AcuI	CTGAAG	2 cut(s)	74, 1052
AfaI	GTAC	4 cut(s)	334, 344, 765, 979
AfiI	CCNNNNNNNGG	2 cut(s)	110, 855
AgsI	TTSAA	5 cut(s)	398, 606, 809, 1088, 1127
AluBI	AGCT	7 cut(s)	9, 150, 184, 224, 287, 383, 724
AluI	AGCT	7 cut(s)	9, 150, 184, 224, 287, 383, 724
Alw21I	GWGCWC	2 cut(s)	186, 226
Alw26I	GTCTC	1 cut(s)	1104
AlwI	GGATC	4 cut(s)	85, 571, 836, 1049
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	3 cut(s)	453, 689, 1200
ApeKI	GCWGC	2 cut(s)	380, 557
AseI	ATTAAT	1 cut(s)	660
Asp700I	GAANNNNTTC	4 cut(s)	151, 270, 548, 1092
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	284, 359
AvaII	GGWCC	1 cut(s)	358
BalI	TGGCCA	2 cut(s)	455, 1202
BanII	GRGCYC	2 cut(s)	186, 226
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	186, 226
BbvI	GCAGC	2 cut(s)	392, 544
BccI	CCATC	3 cut(s)	284, 445, 875
BceAI	ACGGC	2 cut(s)	179, 1076
BcgI	CGANNNNNNTGC	2 cut(s)	1043, 1077
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	2 cut(s)	249, 432
BfmI	CTRYAG	4 cut(s)	378, 558, 620, 1105
BisI	GCNGC	2 cut(s)	381, 558
BlsI	GCNGC	2 cut(s)	382, 559
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	9, 117, 789
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	1040
BpmI	CTGGAG	1 cut(s)	1137
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	671, 746
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 855
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	3 cut(s)	113, 1065, 1203
BseAI	TCCGGA	1 cut(s)	31
BseGI	GGATG	5 cut(s)	40, 247, 276, 456, 867
BseLI	CCNNNNNNNGG	2 cut(s)	110, 855
BseMII	CTCAG	4 cut(s)	14, 90, 887, 935
BseNI	ACTGG	3 cut(s)	113, 1065, 1203
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	392, 544
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	3 cut(s)	455, 691, 1202
BsiHKAI	GWGCWC	2 cut(s)	186, 226
BsiSI	CCGG	2 cut(s)	32, 295
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	110, 855
BsmAI	GTCTC	1 cut(s)	1104
BsmBI	CGTCTC	1 cut(s)	1104
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	455, 691, 1202
Bsp1286I	GDGCHC	2 cut(s)	186, 226
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
Bsp68I	TCGCGA	1 cut(s)	696
BspACI	CCGC	3 cut(s)	47, 80, 679
BspANI	GGCC	3 cut(s)	455, 691, 1202
BspCNI	CTCAG	5 cut(s)	15, 91, 886, 936, 1233
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	4 cut(s)	382, 562, 624, 1109
BspPI	GGATC	4 cut(s)	85, 571, 836, 1049
BsrBI	CCGCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	113, 1065, 1203
BssAI	RCCGGY	1 cut(s)	294
BssMI	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
Bst4CI	ACNGT	4 cut(s)	235, 484, 768, 1169
Bst6I	CTCTTC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	1028
BstDEI	CTNAG	5 cut(s)	23, 99, 873, 944, 1220
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	5 cut(s)	40, 247, 276, 456, 867
BstFNI	CGCG	1 cut(s)	696
BstKTI	GATC	6 cut(s)	93, 566, 844, 879, 976, 1057
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	685, 1030
BstPI	GGTNACC	1 cut(s)	784
BstSFI	CTRYAG	4 cut(s)	378, 558, 620, 1105
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	392, 544
BstV2I	GAAGAC	1 cut(s)	1040
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	455, 691, 1202
BtsCI	GGATG	5 cut(s)	40, 247, 276, 456, 867
BtsIMutI	CAGTG	3 cut(s)	106, 773, 1174
BtuMI	TCGCGA	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	1028
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	1121
Csp6I	GTAC	4 cut(s)	333, 343, 764, 978
CviAII	CATG	6 cut(s)	327, 371, 682, 826, 880, 1027
CviQI	GTAC	4 cut(s)	333, 343, 764, 978
DdeI	CTNAG	5 cut(s)	23, 99, 873, 944, 1220
DpnI	GATC	6 cut(s)	92, 565, 843, 878, 975, 1056
DpnII	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
DraI	TTTAAA	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	453, 1200
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Ecl136II	GAGCTC	2 cut(s)	184, 224
Eco24I	GRGCYC	2 cut(s)	186, 226
Eco32I	GATATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	2 cut(s)	184, 224
Eco57I	CTGAAG	2 cut(s)	74, 1052
Eco91I	GGTNACC	1 cut(s)	784
EcoICRI	GAGCTC	2 cut(s)	184, 224
EcoO65I	GGTNACC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	804
EcoT38I	GRGCYC	2 cut(s)	186, 226
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	6 cut(s)	330, 374, 685, 829, 883, 1030
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	6 cut(s)	326, 370, 681, 825, 879, 1026
FauI	CCCGC	1 cut(s)	686
Fnu4HI	GCNGC	2 cut(s)	381, 558
FokI	GGATG	5 cut(s)	47, 254, 263, 463, 854
FriOI	GRGCYC	2 cut(s)	186, 226
Fsp4HI	GCNGC	2 cut(s)	381, 558
FspBI	CTAG	2 cut(s)	249, 432
GluI	GCNGC	2 cut(s)	381, 558
GsaI	CCCAGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	1137
HaeIII	GGCC	3 cut(s)	455, 691, 1202
HapII	CCGG	2 cut(s)	32, 295
HgaI	GACGC	1 cut(s)	1121
Hin1II	CATG	6 cut(s)	330, 374, 685, 829, 883, 1030
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	2 cut(s)	148, 722
HinfI	GANTC	2 cut(s)	349, 1192
HpaII	CCGG	2 cut(s)	32, 295
HphI	GGTGA	2 cut(s)	284, 359
Hpy166II	GTNNAC	1 cut(s)	1045
Hpy188I	TCNGA	7 cut(s)	221, 568, 641, 876, 929, 1098, 1223
Hpy188III	TCNNGA	9 cut(s)	32, 52, 98, 144, 227, 280, 410, 650, 695
Hpy8I	GTNNAC	1 cut(s)	1045
HpyAV	CCTTC	2 cut(s)	331, 855
HpyCH4III	ACNGT	4 cut(s)	235, 484, 768, 1169
HpyCH4V	TGCA	9 cut(s)	380, 446, 560, 622, 802, 899, 1026, 1107, 1214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	5 cut(s)	23, 99, 873, 944, 1220
Hsp92II	CATG	6 cut(s)	330, 374, 685, 829, 883, 1030
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
LmnI	GCTCC	4 cut(s)	6, 54, 135, 189
Lsp1109I	GCAGC	2 cut(s)	392, 544
LweI	GCATC	3 cut(s)	9, 117, 789
MaeI	CTAG	2 cut(s)	249, 432
MaeIII	GTNAC	2 cut(s)	188, 784
MalI	GATC	6 cut(s)	92, 565, 843, 878, 975, 1056
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
MboII	GAAGA	6 cut(s)	67, 447, 541, 821, 1045, 1115
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	186, 226
MlsI	TGGCCA	2 cut(s)	455, 1202
MluCI	AATT	3 cut(s)	362, 426, 601
MluNI	TGGCCA	2 cut(s)	455, 1202
Mox20I	TGGCCA	2 cut(s)	455, 1202
Mph1103I	ATGCAT	1 cut(s)	804
MroI	TCCGGA	1 cut(s)	31
MroXI	GAANNNNTTC	4 cut(s)	151, 270, 548, 1092
MscI	TGGCCA	2 cut(s)	455, 1202
MseI	TTAA	4 cut(s)	660, 734, 773, 1146
Msp20I	TGGCCA	2 cut(s)	455, 1202
MspI	CCGG	2 cut(s)	32, 295
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
NlaIII	CATG	6 cut(s)	330, 374, 685, 829, 883, 1030
NlaIV	GGNNCC	1 cut(s)	273
NruI	TCGCGA	1 cut(s)	696
NsiI	ATGCAT	1 cut(s)	804
NspI	RCATGY	2 cut(s)	685, 1030
PaeI	GCATGC	1 cut(s)	1030
PdmI	GAANNNNTTC	4 cut(s)	151, 270, 548, 1092
PfeI	GAWTC	2 cut(s)	349, 1192
PkrI	GCNGC	2 cut(s)	382, 559
PshBI	ATTAAT	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	1181
Psp124BI	GAGCTC	2 cut(s)	186, 226
PspEI	GGTNACC	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	4 cut(s)	382, 562, 624, 1109
PsuI	RGATCY	1 cut(s)	90
RruI	TCGCGA	1 cut(s)	696
RsaI	GTAC	4 cut(s)	334, 344, 765, 979
RsaNI	GTAC	4 cut(s)	333, 343, 764, 978
SacI	GAGCTC	2 cut(s)	186, 226
SaqAI	TTAA	4 cut(s)	660, 734, 773, 1146
SatI	GCNGC	2 cut(s)	381, 558
Sau3AI	GATC	6 cut(s)	90, 563, 841, 876, 973, 1054
Sau96I	GGNCC	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	186, 226
SfaNI	GCATC	3 cut(s)	9, 117, 789
SfcI	CTRYAG	4 cut(s)	378, 558, 620, 1105
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	650, 725
SmoI	CTYRAG	2 cut(s)	650, 725
SphI	GCATGC	1 cut(s)	1030
Sse9I	AATT	3 cut(s)	362, 426, 601
SsiI	CCGC	3 cut(s)	47, 80, 679
SspMI	CTAG	2 cut(s)	249, 432
SstI	GAGCTC	2 cut(s)	186, 226
TaaI	ACNGT	4 cut(s)	235, 484, 768, 1169
TaqI	TCGA	4 cut(s)	125, 145, 420, 542
TasI	AATT	3 cut(s)	362, 426, 601
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	349, 1192
Tru1I	TTAA	4 cut(s)	660, 734, 773, 1146
Tru9I	TTAA	4 cut(s)	660, 734, 773, 1146
TscAI	CASTG	3 cut(s)	113, 773, 1174
TseI	GCWGC	2 cut(s)	380, 557
TspDTI	ATGAA	6 cut(s)	74, 279, 315, 513, 792, 930
TspGWI	ACGGA	2 cut(s)	176, 751
TspRI	CASTG	3 cut(s)	113, 773, 1174
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	660
XceI	RCATGY	2 cut(s)	685, 1030
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XmnI	GAANNNNTTC	4 cut(s)	151, 270, 548, 1092
XspI	CTAG	2 cut(s)	249, 432
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.