pycom05g04830

Squalene synthase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
5699476 .. 5706901
7426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04830.12

Sequence Viewer

Length: 1446 bp
ATGTGGAAAACTAAAGAAATGAAATATTCTGATTCTAAAATAAGTAAAAATAATAACACAGCACATATTCAACGACTTTTTTTGGCTCCAAATCCTGATTCTTTAATTTCTGAAACTCCCGGGACGCCAGCTTGGACCAAGCCTCCTGCCACCAGACCTATACAACTATATAAACCCACTTCGAAAAATATCATCAGAACAAATTCCCACCTCCCAAATCCAACCTCTCGCCCCCGGATTTCAAATTCTGCGATTTGGGTTTTGATCTCCTGTCCAGACCGAAAAATGGGTGCCTTGTCGACCTTGCTCAAACACCCCGATGACATTTACCCGCTTCTGAAGCTCAAAATTGCATCGAGGCAAATCGAAAAGCAGATCCCGGCAGAGCCCCATTGGGCTTTTTGCTACAACATGCTCCAGAAGGTCTCTCGTAGTTTCGCTCTCGTTATTCAACAGCTCGGTACAGAGCTCCGCAACGCTATCTGTCTATTTTACCTGGTTCTTCGAGCTCTAGACACTGTCGAGGATGATACAAGCGTTGCAACAGATGTCAAAGTCCCTATCTTGTTAGCATTTCATCGGCACATATATGATCCCGATTGGCATTTTGCATGTGGTACAAATAATTACAAAGTTCTCATGGACGAGTTCCATCATGTTTCAACTGCTTTTTTGGAACTCGGGAAAGGTTATCAGGAGGCAATTGAGGATATTACCAAAAGAATGGGTGCAGGAATGGCAAAATTTATCTTGAAGGAGGTAGAAACCATTGATGACTATGATGAATACTGCCACTATGTGGCAGGACTTGTTGGTTTAGGTTTGTCCAAGCTTTTCCATGCTGCTGGTAAGGAAGATTTGGCCTCAGACTCTCTCTCAAATTCAATGGGCTTATTTCTTCAGAAAACAAACATCATTCGGGATTATTTGGAGGATATTAATGAGATACCAAAGTCACGCATGTTTTGGCCACGCCAAATCTGGAGTAAATATGTCGATAAACTTGAGGACTTGAAATATGAGGAAAACTCAGAGAAGGCAGTGCAATGCTTAAACGACATGGTAACTAATGCTTTGATACATATGGAAGATTGCTTGAAGTACATGGCTGCATTAAGAGATCCTGCTATATTTAAATTTTGTGCCATCCCTCAGATCATGGCAATTGGCACCCTAGCATTGTGCTACAACAACATTGAGGTCTTCAGAGGCGTAGTCAAAATGAGGCGAGGTCTTACAGCAAAAGTTATTGACAGAACAAAATCAATGGATGATGTCTATGGTGCTTTCTTTGATTTTTCTTCCATTCTAAAGTCTAAGGTTGACAAGAATGATCCTAATGCAACAAAAACATTGAGCAGAGTGGAAGCGGTACAGAAATTATGTAGAGACTCTGGAGCTCTGAGCAAAAGGAAATCTTACATCGCCAACCGCGAACAAATCTGA

Protein Analysis

482

Amino Acids

54.8

Weight (kDa)

8.78

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012919)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 290, 1169
AccB7I CCANNNNNTGG 1 cut(s) 799
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 1434
AciI CCGC 4 cut(s) 332, 472, 1370, 1432
AclWI GGATC 4 cut(s) 370, 587, 1115, 1328
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 5 cut(s) 202, 244, 743, 880, 1136
AcuI CTGAAG 3 cut(s) 359, 884, 1189
AcyI GRCGYC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 799
AfaI GTAC 4 cut(s) 463, 619, 1103, 1374
AfiI CCNNNNNNNGG 2 cut(s) 286, 799
AgsI TTSAA 8 cut(s) 71, 243, 452, 663, 754, 885, 1015, 1099
AjnI CCWGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AluBI AGCT 7 cut(s) 131, 343, 457, 469, 509, 832, 1400
AluI AGCT 7 cut(s) 131, 343, 457, 469, 509, 832, 1400
Alw21I GWGCWC 3 cut(s) 471, 511, 1402
Alw26I GTCTC 2 cut(s) 430, 1383
AlwI GGATC 4 cut(s) 370, 587, 1115, 1328
Ama87I CYCGRG 2 cut(s) 119, 680
AoxI GGCC 2 cut(s) 861, 968
ApeKI GCWGC 2 cut(s) 842, 1109
ApoI RAATTY 5 cut(s) 202, 244, 743, 880, 1136
AseI ATTAAT 1 cut(s) 939
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 4 cut(s) 120, 121, 235, 380
AsuII TTCGAA 1 cut(s) 182
AvaI CYCGRG 2 cut(s) 119, 680
AvaII GGWCC 1 cut(s) 135
BaeI ACNNNNGTAYC 4 cut(s) 522, 555, 938, 971
BalI TGGCCA 1 cut(s) 970
BanI GGYRCC 2 cut(s) 290, 1169
BanII GRGCYC 4 cut(s) 390, 471, 511, 1402
BbsI GAAGAC 1 cut(s) 1195
Bbv12I GWGCWC 3 cut(s) 471, 511, 1402
BbvI GCAGC 2 cut(s) 829, 1096
BccI CCATC 2 cut(s) 660, 1154
BciT130I CCWGG 1 cut(s) 497
BcnI CCSGG 4 cut(s) 120, 121, 235, 380
BcoDI GTCTC 2 cut(s) 430, 1383
BfaI CTAG 2 cut(s) 512, 1175
BisI GCNGC 2 cut(s) 843, 1110
BlsI GCNGC 2 cut(s) 844, 1111
Bme1390I CCNGG 5 cut(s) 120, 121, 235, 380, 497
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 2 cut(s) 119, 680
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 3 cut(s) 87, 292, 1171
BmrFI CCNGG 5 cut(s) 120, 121, 235, 380, 497
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 1195
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
BpmI CTGGAG 3 cut(s) 401, 1003, 1416
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 4 cut(s) 120, 121, 235, 380
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 119, 233
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 799
Bse3DI GCAATG 1 cut(s) 1052
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 119, 233
BseGI GGATG 3 cut(s) 532, 1146, 1276
BseLI CCNNNNNNNGG 2 cut(s) 286, 799
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 4 cut(s) 879, 1044, 1166, 1394
BseXI GCAGC 2 cut(s) 829, 1096
BsgI GTGCAG 1 cut(s) 750
Bsh1236I CGCG 1 cut(s) 1434
BshFI GGCC 2 cut(s) 863, 970
BshNI GGYRCC 2 cut(s) 290, 1169
BsiHKAI GWGCWC 3 cut(s) 471, 511, 1402
BsiHKCI CYCGRG 2 cut(s) 119, 680
BsiSI CCGG 3 cut(s) 120, 235, 380
BslFI GGGAC 2 cut(s) 136, 542
BslI CCNNNNNNNGG 2 cut(s) 286, 799
BsmAI GTCTC 2 cut(s) 430, 1383
BsmFI GGGAC 2 cut(s) 136, 542
BsnI GGCC 2 cut(s) 863, 970
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 2 cut(s) 119, 680
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 390, 471, 511, 1402
Bsp143I GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
BspACI CCGC 4 cut(s) 332, 472, 1370, 1432
BspANI GGCC 2 cut(s) 863, 970
BspCNI CTCAG 4 cut(s) 878, 1043, 1165, 1395
BspFNI CGCG 1 cut(s) 1434
BspLI GGNNCC 3 cut(s) 87, 292, 1171
BspPI GGATC 4 cut(s) 370, 587, 1115, 1328
BspT104I TTCGAA 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 290, 1169
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 1052
BssECI CCNNGG 2 cut(s) 119, 233
BssMI GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 520
BstACI GRCGYC 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 865, 1030, 1152, 1317, 1403
BstF5I GGATG 3 cut(s) 532, 1146, 1276
BstFNI CGCG 1 cut(s) 1434
BstKTI GATC 6 cut(s) 267, 378, 595, 1123, 1158, 1336
BstMAI GTCTC 2 cut(s) 430, 1383
BstMBI GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
BstMWI GCNNNNNNNGC 2 cut(s) 340, 737
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 3 cut(s) 415, 615, 964
BstSCI CCNGG 5 cut(s) 118, 119, 233, 378, 495
BstUI CGCG 1 cut(s) 1434
BstV1I GCAGC 2 cut(s) 829, 1096
BstV2I GAAGAC 1 cut(s) 1195
BstX2I RGATCY 2 cut(s) 375, 1120
BstXI CCANNNNNNTGG 2 cut(s) 724, 845
BstYI RGATCY 2 cut(s) 375, 1120
BsuRI GGCC 2 cut(s) 863, 970
BtgZI GCGATG 1 cut(s) 1408
BtsCI GGATG 3 cut(s) 532, 1146, 1276
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 2 cut(s) 516, 1047
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 135
Cfr9I CCCGGG 1 cut(s) 119
CseI GACGC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 462, 618, 1102, 1373
CviAII CATG 9 cut(s) 412, 612, 640, 656, 839, 961, 1060, 1105, 1159
CviQI GTAC 4 cut(s) 462, 618, 1102, 1373
DdeI CTNAG 5 cut(s) 865, 1030, 1152, 1317, 1403
DpnI GATC 6 cut(s) 266, 377, 594, 1122, 1157, 1335
DpnII GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
DraI TTTAAA 1 cut(s) 1135
DraIII CACNNNGTG 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 968
Ecl136II GAGCTC 3 cut(s) 469, 509, 1400
Eco24I GRGCYC 4 cut(s) 390, 471, 511, 1402
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 135
Eco53kI GAGCTC 3 cut(s) 469, 509, 1400
Eco57I CTGAAG 3 cut(s) 359, 884, 1189
Eco88I CYCGRG 2 cut(s) 119, 680
EcoICRI GAGCTC 3 cut(s) 469, 509, 1400
EcoRII CCWGG 1 cut(s) 495
EcoT38I GRGCYC 4 cut(s) 390, 471, 511, 1402
FaeI CATG 9 cut(s) 415, 615, 643, 659, 842, 964, 1063, 1108, 1162
FalI AAGNNNNNCTT 2 cut(s) 1402, 1434
FaqI GGGAC 2 cut(s) 136, 542
FatI CATG 9 cut(s) 411, 611, 639, 655, 838, 960, 1059, 1104, 1158
FauI CCCGC 1 cut(s) 339
FauNDI CATATG 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 843, 1110
FokI GGATG 3 cut(s) 539, 1133, 1283
FriOI GRGCYC 4 cut(s) 390, 471, 511, 1402
Fsp4HI GCNGC 2 cut(s) 843, 1110
FspBI CTAG 2 cut(s) 512, 1175
GluI GCNGC 2 cut(s) 843, 1110
GsuI CTGGAG 3 cut(s) 401, 1003, 1416
HaeIII GGCC 2 cut(s) 863, 970
HapII CCGG 3 cut(s) 120, 235, 380
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 9 cut(s) 415, 615, 643, 659, 842, 964, 1063, 1108, 1162
HincII GTYRAC 2 cut(s) 300, 1324
HindII GTYRAC 2 cut(s) 300, 1324
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 4 cut(s) 32, 98, 869, 1391
HpaII CCGG 3 cut(s) 120, 235, 380
Hpy166II GTNNAC 2 cut(s) 300, 1324
Hpy8I GTNNAC 2 cut(s) 300, 1324
HpyAV CCTTC 3 cut(s) 415, 748, 1030
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4V TGCA 7 cut(s) 353, 542, 611, 731, 1045, 1112, 1343
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 737
HpyF3I CTNAG 5 cut(s) 865, 1030, 1152, 1317, 1403
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 9 cut(s) 415, 615, 643, 659, 842, 964, 1063, 1108, 1162
Kzo9I GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
LmnI GCTCC 4 cut(s) 91, 420, 474, 1397
Lsp1109I GCAGC 2 cut(s) 829, 1096
LweI GCATC 1 cut(s) 362
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 2 cut(s) 512, 1175
MaeIII GTNAC 2 cut(s) 954, 1063
MalI GATC 6 cut(s) 266, 377, 594, 1122, 1157, 1335
MboI GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
MboII GAAGA 6 cut(s) 494, 866, 890, 1100, 1195, 1293
MfeI CAATTG 2 cut(s) 702, 1164
MflI RGATCY 2 cut(s) 375, 1120
MhlI GDGCHC 4 cut(s) 390, 471, 511, 1402
MlsI TGGCCA 1 cut(s) 970
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 2 cut(s) 863, 1385
MmeI TCCRAC 1 cut(s) 245
Mox20I TGGCCA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 970
MseI TTAA 5 cut(s) 104, 939, 1052, 1115, 1134
MslI CAYNNNNRTG 2 cut(s) 318, 588
Msp20I TGGCCA 1 cut(s) 970
MspI CCGG 3 cut(s) 120, 235, 380
MspR9I CCNGG 5 cut(s) 120, 121, 235, 380, 497
MunI CAATTG 2 cut(s) 702, 1164
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 1434
MwoI GCNNNNNNNGC 2 cut(s) 340, 737
NciI CCSGG 4 cut(s) 120, 121, 235, 380
NdeI CATATG 1 cut(s) 1083
NdeII GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
NlaIII CATG 9 cut(s) 415, 615, 643, 659, 842, 964, 1063, 1108, 1162
NlaIV GGNNCC 3 cut(s) 87, 292, 1171
NmuCI GTSAC 1 cut(s) 954
NspI RCATGY 3 cut(s) 415, 615, 964
NspV TTCGAA 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 1431
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 32, 98
PflFI GACNNNGTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 799
PkrI GCNGC 2 cut(s) 844, 1111
PleI GAGTC 2 cut(s) 863, 1385
PpsI GAGTC 2 cut(s) 863, 1385
PshBI ATTAAT 1 cut(s) 939
Psp124BI GAGCTC 3 cut(s) 471, 511, 1402
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 3 cut(s) 87, 292, 1171
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 2 cut(s) 375, 1120
PsyI GACNNNGTC 1 cut(s) 518
RsaI GTAC 4 cut(s) 463, 619, 1103, 1374
RsaNI GTAC 4 cut(s) 462, 618, 1102, 1373
RseI CAYNNNNRTG 2 cut(s) 318, 588
SacI GAGCTC 3 cut(s) 471, 511, 1402
SalI GTCGAC 1 cut(s) 298
SaqAI TTAA 5 cut(s) 104, 939, 1052, 1115, 1134
SatI GCNGC 2 cut(s) 843, 1110
Sau3AI GATC 6 cut(s) 264, 375, 592, 1120, 1155, 1333
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 2 cut(s) 863, 1385
ScrFI CCNGG 5 cut(s) 120, 121, 235, 380, 497
SduI GDGCHC 4 cut(s) 390, 471, 511, 1402
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 121
SmiI ATTTAAAT 1 cut(s) 1135
SmiMI CAYNNNNRTG 2 cut(s) 318, 588
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SsiI CCGC 4 cut(s) 332, 472, 1370, 1432
SspI AATATT 1 cut(s) 26
SspMI CTAG 2 cut(s) 512, 1175
SstI GAGCTC 3 cut(s) 471, 511, 1402
StyD4I CCNGG 5 cut(s) 118, 119, 233, 378, 495
SwaI ATTTAAAT 1 cut(s) 1135
TaaI ACNGT 1 cut(s) 520
TaqI TCGA 7 cut(s) 182, 299, 356, 366, 505, 522, 996
TaqII GACCGA 1 cut(s) 294
TatI WGTACW 1 cut(s) 1101
TfiI GAWTC 2 cut(s) 32, 98
Tru1I TTAA 5 cut(s) 104, 939, 1052, 1115, 1134
Tru9I TTAA 5 cut(s) 104, 939, 1052, 1115, 1134
TscAI CASTG 2 cut(s) 523, 1047
TseFI GTSAC 1 cut(s) 954
TseI GCWGC 2 cut(s) 842, 1109
Tsp45I GTSAC 1 cut(s) 954
TspDTI ATGAA 3 cut(s) 35, 566, 798
TspMI CCCGGG 1 cut(s) 119
TspRI CASTG 2 cut(s) 523, 1047
Tth111I GACNNNGTC 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 799
VpaK11BI GGWCC 1 cut(s) 135
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 5 cut(s) 202, 244, 743, 880, 1136
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 3 cut(s) 415, 615, 964
XcmI CCANNNNNNNNNTGG 1 cut(s) 978
XmaI CCCGGG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 2 cut(s) 512, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.