Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Reverse (-)

11991804 .. 11999314

Gene Structure 7511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G087000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTACCTTGGGGACTTTGATGAAACATCCGGATGACATTTACCCGCTTTTGAAGCTCAAAATGGCAGCCAAGAACTTAGAGAAGCAGATCCCTCCAGAGCCCCATTGGGCTTTCTGTTATTCCATGCTTCACAAGGTGTCTCGTAGTTTTGCTCTCGTTATTCAACAGCTCGGCACTGAGCTTCGTAACGCTGTCTGTATATTTTATCTGGTTCTTCGAGCTCTAGACACTGTCGAGGATGATACAAGCATTGCAGCAGATGTCAAAGTCCCCATCTTGTTAGCGTTTCATCGTCACATATATGACCCCGATTGGCATTTTTCATGTGGTACAAAGGACTACAAAGTTCTCATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTCGGGAAAGGTTATCAGGAGGCAATTGAGGATATTACCAAAAGAATGGGTGCAGGAATGGCAAAATTTATCTGCAAGGAGGTAGAAACCATTGATGACTATGATGAGTACTGCCACTATGTGGCAGGGCTTGTTGGTTTAGGTTTGTCCAAGCTTTTCCACGCTGCTGATAAGGAAGATTTGGCCTCAGATTCTCTCTCAAATTCAATGGGCTTATTTCTTCAGAAAACAAACATCATTCGGGATTATTTGGAGGATATTAATGAGATACCGAAGTCTCGTATGTTTTGGCCACGTCAGATCTGGAGCAAATATGTTAACAAACTTGAGGACTTGAAATATGAGGAAAACTCAGACAAGGCTGTGCAATGCTTGAATGACATGGTCACTAATGCGTTGATACATATGGAAGATTGCTTGAAGTACATGGCTGCTTTAAGAGATCCTGCAATATTTAAATTTTGTGCCATCCCTCAGATCATGGCAATTGGCACGCTGGCATTATGCTACAACAACATTGAGCTCTTCAGAGGTGTAGTCAAAATGAGGAGGGGCCTTACAGCAAAAGTCATTGACCGAACAAAATCAATGGATGATGTCTATGGTGCTTTCTTTGATTTTTCTTCCATTCTAAAGTCCAAGGTTGACAAGAATGACCCTAATGCAACAAAAACATTGAGCAGACTGGAAGCAGTACAGAAAACATGCAGAGCCTCTGGAGCCTTGAGCAAAAGGAAATCCTACATCGTCAGGGGTGAGCCGAGCCACAATTCAACTCTGATTGTGGCACTGTTTATTATATTGGCCATCGTTTACGCTTACCTCTCTGCCAGCCCAAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

413

Amino Acids

46.77

Weight (kDa)

7.57

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	85, 830
AcoI	YGGCCR	2 cut(s)	683, 1197
AcsI	RAATTY	3 cut(s)	458, 595, 851
AcuI	CTGAAG	2 cut(s)	599, 904
AdeI	CACNNNGTG	2 cut(s)	139, 514
AfaI	GTAC	5 cut(s)	7, 334, 503, 818, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	8 cut(s)	55, 167, 378, 600, 730, 769, 814, 1167
AjiI	CACGTC	1 cut(s)	689
AluBI	AGCT	6 cut(s)	58, 172, 184, 224, 547, 916
AluI	AGCT	6 cut(s)	58, 172, 184, 224, 547, 916
Alw21I	GWGCWC	2 cut(s)	226, 918
Alw26I	GTCTC	2 cut(s)	147, 675
AlwI	GGATC	2 cut(s)	85, 830
Ama87I	CYCGRG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	4 cut(s)	576, 683, 946, 1197
ApeKI	GCWGC	4 cut(s)	68, 257, 557, 824
ApoI	RAATTY	3 cut(s)	458, 595, 851
AseI	ATTAAT	1 cut(s)	654
Asp718I	GGTACC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	358, 946
AsuHPI	GGTGA	1 cut(s)	1160
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	358
BaeI	ACNNNNGTAYC	2 cut(s)	653, 686
BalI	TGGCCA	2 cut(s)	685, 1199
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	105, 226, 918
Bbv12I	GWGCWC	2 cut(s)	226, 918
BbvI	GCAGC	4 cut(s)	80, 269, 544, 811
BccI	CCATC	3 cut(s)	284, 869, 1208
BcoDI	GTCTC	2 cut(s)	147, 675
BfaI	CTAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	4 cut(s)	69, 258, 558, 825
BlsI	GCNGC	4 cut(s)	70, 259, 559, 826
BmcAI	AGTACT	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	358, 946
BmiI	GGNNCC	3 cut(s)	7, 947, 1114
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	3 cut(s)	81, 718, 1131
BpuEI	CTTGAG	2 cut(s)	740, 1138
BsaJI	CCNNGG	2 cut(s)	9, 1032
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	361, 1083
Bse3DI	GCAATG	2 cut(s)	252, 767
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	9, 1032
BseGI	GGATG	5 cut(s)	28, 40, 247, 861, 991
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	2 cut(s)	252, 767
BseMII	CTCAG	4 cut(s)	171, 594, 759, 881
BseNI	ACTGG	2 cut(s)	361, 1083
BseRI	GAGGAG	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	80, 269, 544, 811
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	4 cut(s)	578, 685, 948, 1199
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	226, 918
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	28, 257
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	147, 675
BsmFI	GGGAC	2 cut(s)	28, 257
BsnI	GGCC	4 cut(s)	578, 685, 948, 1199
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	3 cut(s)	105, 226, 918
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	90, 693, 835, 870
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	4 cut(s)	578, 685, 948, 1199
BspCNI	CTCAG	4 cut(s)	172, 593, 758, 880
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	7, 947, 1114
BspPI	GGATC	2 cut(s)	85, 830
BspQI	GCTCTTC	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	252, 767
BsrI	ACTGG	2 cut(s)	361, 1083
BssECI	CCNNGG	2 cut(s)	9, 1032
BssMI	GATC	4 cut(s)	90, 693, 835, 870
BssT1I	CCWWGG	2 cut(s)	9, 1032
Bst4CI	ACNGT	2 cut(s)	235, 1185
Bst6I	CTCTTC	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	887, 891, 1225
BstDEI	CTNAG	5 cut(s)	79, 180, 580, 745, 867
BstF5I	GGATG	5 cut(s)	28, 40, 247, 861, 991
BstKTI	GATC	4 cut(s)	93, 696, 838, 873
BstMAI	GTCTC	2 cut(s)	147, 675
BstMBI	GATC	4 cut(s)	90, 693, 835, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 452, 1112
BstNSI	RCATGY	1 cut(s)	1101
BstV1I	GCAGC	4 cut(s)	80, 269, 544, 811
BstX2I	RGATCY	3 cut(s)	90, 693, 835
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	3 cut(s)	90, 693, 835
BsuRI	GGCC	4 cut(s)	578, 685, 948, 1199
BtrI	CACGTC	1 cut(s)	689
BtsCI	GGATG	5 cut(s)	28, 40, 247, 861, 991
BtsIMutI	CAGTG	3 cut(s)	177, 231, 1181
Cac8I	GCNNGC	3 cut(s)	887, 891, 1225
Cfr13I	GGNCC	2 cut(s)	358, 946
Csp6I	GTAC	5 cut(s)	6, 333, 502, 817, 1088
CviAII	CATG	8 cut(s)	127, 327, 355, 371, 775, 820, 874, 1098
CviQI	GTAC	5 cut(s)	6, 333, 502, 817, 1088
DdeI	CTNAG	5 cut(s)	79, 180, 580, 745, 867
DpnI	GATC	4 cut(s)	92, 695, 837, 872
DpnII	GATC	4 cut(s)	90, 693, 835, 870
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	2 cut(s)	139, 514
EaeI	YGGCCR	2 cut(s)	683, 1197
Eam1104I	CTCTTC	1 cut(s)	923
EarI	CTCTTC	1 cut(s)	923
Ecl136II	GAGCTC	2 cut(s)	224, 916
Eco130I	CCWWGG	2 cut(s)	9, 1032
Eco24I	GRGCYC	3 cut(s)	105, 226, 918
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	2 cut(s)	224, 916
Eco57I	CTGAAG	2 cut(s)	599, 904
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	2 cut(s)	224, 916
EcoO109I	RGGNCCY	1 cut(s)	946
EcoT14I	CCWWGG	2 cut(s)	9, 1032
EcoT38I	GRGCYC	3 cut(s)	105, 226, 918
ErhI	CCWWGG	2 cut(s)	9, 1032
FaeI	CATG	8 cut(s)	130, 330, 358, 374, 778, 823, 877, 1101
FaqI	GGGAC	2 cut(s)	28, 257
FatI	CATG	8 cut(s)	126, 326, 354, 370, 774, 819, 873, 1097
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	4 cut(s)	69, 258, 558, 825
FokI	GGATG	5 cut(s)	15, 47, 254, 848, 998
FriOI	GRGCYC	3 cut(s)	105, 226, 918
Fsp4HI	GCNGC	4 cut(s)	69, 258, 558, 825
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	69, 258, 558, 825
GsuI	CTGGAG	3 cut(s)	81, 718, 1131
HaeIII	GGCC	4 cut(s)	578, 685, 948, 1199
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	8 cut(s)	130, 330, 358, 374, 778, 823, 877, 1101
HincII	GTYRAC	2 cut(s)	712, 1039
HindII	GTYRAC	2 cut(s)	712, 1039
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	584, 1233
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	1160
Hpy166II	GTNNAC	3 cut(s)	712, 1039, 1207
Hpy188I	TCNGA	7 cut(s)	583, 618, 693, 748, 870, 923, 1173
Hpy188III	TCNNGA	9 cut(s)	32, 98, 227, 389, 397, 410, 635, 697, 1110
Hpy8I	GTNNAC	3 cut(s)	712, 1039, 1207
HpyCH4III	ACNGT	2 cut(s)	235, 1185
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	7 cut(s)	257, 446, 468, 760, 842, 1058, 1101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 452, 1112
HpyF3I	CTNAG	5 cut(s)	79, 180, 580, 745, 867
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	8 cut(s)	130, 330, 358, 374, 778, 823, 877, 1101
Kpn2I	TCCGGA	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	90, 693, 835, 870
LguI	GCTCTTC	1 cut(s)	923
LmnI	GCTCC	2 cut(s)	699, 1112
Lsp1109I	GCAGC	4 cut(s)	80, 269, 544, 811
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	3 cut(s)	188, 296, 778
MalI	GATC	4 cut(s)	92, 695, 837, 872
MboI	GATC	4 cut(s)	90, 693, 835, 870
MboII	GAAGA	6 cut(s)	209, 581, 605, 815, 910, 1008
MfeI	CAATTG	2 cut(s)	417, 879
MflI	RGATCY	3 cut(s)	90, 693, 835
MhlI	GDGCHC	3 cut(s)	105, 226, 918
MlsI	TGGCCA	2 cut(s)	685, 1199
MluCI	AATT	6 cut(s)	417, 458, 595, 851, 879, 1162
MluNI	TGGCCA	2 cut(s)	685, 1199
Mox20I	TGGCCA	2 cut(s)	685, 1199
MroI	TCCGGA	1 cut(s)	31
MscI	TGGCCA	2 cut(s)	685, 1199
MseI	TTAA	4 cut(s)	654, 711, 830, 849
MslI	CAYNNNNRTG	2 cut(s)	33, 303
Msp20I	TGGCCA	2 cut(s)	685, 1199
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	2 cut(s)	417, 879
MwoI	GCNNNNNNNGC	3 cut(s)	55, 452, 1112
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	4 cut(s)	90, 693, 835, 870
NlaIII	CATG	8 cut(s)	130, 330, 358, 374, 778, 823, 877, 1101
NlaIV	GGNNCC	3 cut(s)	7, 947, 1114
NmeAIII	GCCGAG	2 cut(s)	153, 1179
NmuCI	GTSAC	2 cut(s)	296, 778
NspI	RCATGY	1 cut(s)	1101
PciSI	GCTCTTC	1 cut(s)	923
PfeI	GAWTC	2 cut(s)	584, 1233
PflFI	GACNNNGTC	2 cut(s)	233, 776
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	70, 259, 559, 826
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	2 cut(s)	226, 918
PspN4I	GGNNCC	3 cut(s)	7, 947, 1114
PspPI	GGNCC	2 cut(s)	358, 946
PsuI	RGATCY	3 cut(s)	90, 693, 835
PsyI	GACNNNGTC	2 cut(s)	233, 776
RsaI	GTAC	5 cut(s)	7, 334, 503, 818, 1089
RsaNI	GTAC	5 cut(s)	6, 333, 502, 817, 1088
RseI	CAYNNNNRTG	2 cut(s)	33, 303
SacI	GAGCTC	2 cut(s)	226, 918
SapI	GCTCTTC	1 cut(s)	923
SaqAI	TTAA	4 cut(s)	654, 711, 830, 849
SatI	GCNGC	4 cut(s)	69, 258, 558, 825
Sau3AI	GATC	4 cut(s)	90, 693, 835, 870
Sau96I	GGNCC	2 cut(s)	358, 946
ScaI	AGTACT	1 cut(s)	503
SduI	GDGCHC	3 cut(s)	105, 226, 918
SinI	GGWCC	1 cut(s)	358
SmiI	ATTTAAAT	1 cut(s)	850
SmiMI	CAYNNNNRTG	2 cut(s)	33, 303
SmlI	CTYRAG	2 cut(s)	719, 1117
SmoI	CTYRAG	2 cut(s)	719, 1117
Sse9I	AATT	6 cut(s)	417, 458, 595, 851, 879, 1162
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	2 cut(s)	226, 918
StyI	CCWWGG	2 cut(s)	9, 1032
SwaI	ATTTAAAT	1 cut(s)	850
TaaI	ACNGT	2 cut(s)	235, 1185
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	220, 237
TaqII	GACCGA	1 cut(s)	984
TasI	AATT	6 cut(s)	417, 458, 595, 851, 879, 1162
TatI	WGTACW	3 cut(s)	501, 816, 1087
TfiI	GAWTC	2 cut(s)	584, 1233
Tru1I	TTAA	4 cut(s)	654, 711, 830, 849
Tru9I	TTAA	4 cut(s)	654, 711, 830, 849
TscAI	CASTG	3 cut(s)	184, 238, 1188
TseFI	GTSAC	2 cut(s)	296, 778
TseI	GCWGC	4 cut(s)	68, 257, 557, 824
Tsp45I	GTSAC	2 cut(s)	296, 778
TspDTI	ATGAA	4 cut(s)	38, 281, 315, 356
TspRI	CASTG	3 cut(s)	184, 238, 1188
Tth111I	GACNNNGTC	2 cut(s)	233, 776
Van91I	CCANNNNNTGG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	3 cut(s)	458, 595, 851
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	1101
XcmI	CCANNNNNNNNNTGG	2 cut(s)	105, 693
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.