Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Forward (+)

16542242 .. 16545194

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGTTATATCCGCTCTTGAAGTTGAAACTTGCGATTACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCTGTTATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTCTGAAACTTGAAAAAGGGTATCAAGAGGCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTTAGGTTTGTCAAAAATCTTCATTGCTTCGGAATTAGAAATACTGACTCCAGATTGGAAGCAGATTTCAAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTTGAAGACATTAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTGACAAACTTGAGGACTTCAAAAATGAGGAGAAAGCTACAAAAGCAGTGCAGTGTTTGAATGAAATGGTCACTAATGCATTGAATCATGTTGAAGATTGTTTGAAATCCTTGGCTTCACTGCGTGATCCTGCAATATTTCAGTCTTGCGCCATCCCTCAGATCGTGGCGATTGGAACACTTGCGTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGACGAGGTCTAATAGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGCGTTCTATGATTTTTCTTGCATGCTACAAACAAAGGTTGACAATAACGATCCAAATGCTATGAAAACATTAAACCGACTCGAAACCATCAAGAAATTTTGCAAAGAAAATGGAGGACTTCACAAAAGAAAATCTTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATATCTCAAAGCAAACCAATGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

413

Amino Acids

47.18

Weight (kDa)

8.13

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	12 - 194	2.8e-30	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	1 cut(s)	679
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	836, 1049
AcoI	YGGCCR	2 cut(s)	453, 1200
AcsI	RAATTY	2 cut(s)	601, 1100
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	4 cut(s)	16, 255, 334, 918
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	3 cut(s)	19, 661, 940
AlwI	GGATC	2 cut(s)	836, 1049
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	3 cut(s)	453, 689, 1200
ApeKI	GCWGC	2 cut(s)	380, 515
ApoI	RAATTY	2 cut(s)	601, 1100
AseI	ATTAAT	1 cut(s)	660
AspLEI	GCGC	2 cut(s)	681, 866
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	323, 359
AvaII	GGWCC	1 cut(s)	358
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	2 cut(s)	455, 1202
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	392, 502
BccI	CCATC	3 cut(s)	302, 875, 1100
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	1043, 1077
BcoDI	GTCTC	3 cut(s)	19, 661, 940
BfmI	CTRYAG	4 cut(s)	378, 516, 606, 620
BisI	GCNGC	2 cut(s)	381, 516
BlsI	GCNGC	2 cut(s)	382, 517
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	178
BoxI	GACNNNNGTC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	3 cut(s)	31, 119, 746
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	2 cut(s)	825, 1164
BsaWI	WCCGGW	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	257, 320, 1203
Bse3DI	GCAATG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	825, 1164
BseGI	GGATG	5 cut(s)	28, 40, 247, 867, 997
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	95, 887
BseNI	ACTGG	3 cut(s)	257, 320, 1203
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	392, 502
BsgI	GTGCAG	2 cut(s)	465, 785
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	3 cut(s)	455, 691, 1202
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	3 cut(s)	19, 661, 940
BsmBI	CGTCTC	1 cut(s)	940
BsnI	GGCC	3 cut(s)	455, 691, 1202
Bso31I	GGTCTC	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp13I	TCCGGA	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	916
Bsp143I	GATC	5 cut(s)	264, 841, 876, 973, 1054
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	3 cut(s)	455, 691, 1202
BspCNI	CTCAG	2 cut(s)	94, 886
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	3 cut(s)	382, 520, 624
BspPI	GGATC	2 cut(s)	836, 1049
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	916
BsrI	ACTGG	3 cut(s)	257, 320, 1203
BssECI	CCNNGG	2 cut(s)	825, 1164
BssMI	GATC	5 cut(s)	264, 841, 876, 973, 1054
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	825, 1164
Bst2BI	CACGAG	1 cut(s)	693
Bst4CI	ACNGT	3 cut(s)	235, 296, 1004
BstAUI	TGTACA	1 cut(s)	916
BstC8I	GCNNGC	1 cut(s)	1028
BstDEI	CTNAG	3 cut(s)	81, 109, 873
BstF5I	GGATG	5 cut(s)	28, 40, 247, 867, 997
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	681, 866
BstKTI	GATC	5 cut(s)	267, 844, 879, 976, 1057
BstMAI	GTCTC	3 cut(s)	19, 661, 940
BstMBI	GATC	5 cut(s)	264, 841, 876, 973, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 758
BstNSI	RCATGY	2 cut(s)	685, 1030
BstPAI	GACNNNNGTC	1 cut(s)	673
BstSFI	CTRYAG	4 cut(s)	378, 516, 606, 620
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	392, 502
BstV2I	GAAGAC	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	455, 691, 1202
BtsCI	GGATG	5 cut(s)	28, 40, 247, 867, 997
BtsI	GCAGTG	3 cut(s)	768, 773, 833
BtsIMutI	CAGTG	4 cut(s)	264, 768, 773, 833
Cac8I	GCNNGC	1 cut(s)	1028
CfoI	GCGC	2 cut(s)	681, 866
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	4 cut(s)	15, 254, 333, 917
CviAII	CATG	5 cut(s)	327, 371, 682, 803, 1027
CviQI	GTAC	4 cut(s)	15, 254, 333, 917
DdeI	CTNAG	3 cut(s)	81, 109, 873
DpnI	GATC	5 cut(s)	266, 843, 878, 975, 1056
DpnII	GATC	5 cut(s)	264, 841, 876, 973, 1054
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	2 cut(s)	453, 1200
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	825, 1164
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	825, 1164
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	2 cut(s)	825, 1164
Esp3I	CGTCTC	1 cut(s)	940
FaeI	CATG	5 cut(s)	330, 374, 685, 806, 1030
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 1123, 1155, 1157, 1189
FatI	CATG	5 cut(s)	326, 370, 681, 802, 1026
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	2 cut(s)	381, 516
FokI	GGATG	5 cut(s)	15, 47, 254, 854, 1004
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	381, 516
GlaI	GCGC	2 cut(s)	680, 865
GluI	GCNGC	2 cut(s)	381, 516
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	455, 691, 1202
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	2 cut(s)	681, 866
Hin1II	CATG	5 cut(s)	330, 374, 685, 806, 1030
Hin6I	GCGC	2 cut(s)	679, 864
HinP1I	GCGC	2 cut(s)	679, 864
HincII	GTYRAC	3 cut(s)	718, 1045, 1147
HindII	GTYRAC	3 cut(s)	718, 1045, 1147
HindIII	AAGCTT	2 cut(s)	7, 148
HinfI	GANTC	5 cut(s)	91, 214, 577, 799, 1083
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	323, 359
Hpy166II	GTNNAC	4 cut(s)	718, 1000, 1045, 1147
Hpy188I	TCNGA	6 cut(s)	84, 221, 282, 390, 562, 876
Hpy188III	TCNNGA	9 cut(s)	32, 52, 227, 410, 581, 650, 695, 937, 1096
Hpy8I	GTNNAC	4 cut(s)	718, 1000, 1045, 1147
HpyCH4III	ACNGT	3 cut(s)	235, 296, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 758
HpyF3I	CTNAG	3 cut(s)	81, 109, 873
Hsp92II	CATG	5 cut(s)	330, 374, 685, 806, 1030
HspAI	GCGC	2 cut(s)	679, 864
Kpn2I	TCCGGA	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	5 cut(s)	264, 841, 876, 973, 1054
LpnPI	CCDG	9 cut(s)	45, 270, 301, 432, 504, 594, 594, 858, 1184
Lsp1109I	GCAGC	2 cut(s)	392, 502
MaeIII	GTNAC	3 cut(s)	188, 311, 784
MalI	GATC	5 cut(s)	266, 843, 878, 975, 1056
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	5 cut(s)	264, 841, 876, 973, 1054
MboII	GAAGA	5 cut(s)	122, 434, 541, 665, 821
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	2 cut(s)	455, 1202
MluCI	AATT	7 cut(s)	126, 276, 362, 483, 563, 601, 1100
MluNI	TGGCCA	2 cut(s)	455, 1202
MlyI	GAGTC	2 cut(s)	571, 1077
Mox20I	TGGCCA	2 cut(s)	455, 1202
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	31
MscI	TGGCCA	2 cut(s)	455, 1202
MseI	TTAA	3 cut(s)	660, 1076, 1146
MslI	CAYNNNNRTG	1 cut(s)	33
Msp20I	TGGCCA	2 cut(s)	455, 1202
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	452, 758
NdeII	GATC	5 cut(s)	264, 841, 876, 973, 1054
NlaIII	CATG	5 cut(s)	330, 374, 685, 806, 1030
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	311, 784
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	2 cut(s)	685, 1030
PaeI	GCATGC	1 cut(s)	1030
PfeI	GAWTC	3 cut(s)	91, 214, 799
PflFI	GACNNNGTC	1 cut(s)	951
PkrI	GCNGC	2 cut(s)	382, 517
PleI	GAGTC	2 cut(s)	571, 1077
PpsI	GAGTC	2 cut(s)	571, 1077
PshAI	GACNNNNGTC	1 cut(s)	673
PshBI	ATTAAT	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	3 cut(s)	382, 520, 624
PsyI	GACNNNGTC	1 cut(s)	951
RsaI	GTAC	4 cut(s)	16, 255, 334, 918
RsaNI	GTAC	4 cut(s)	15, 254, 333, 917
RseI	CAYNNNNRTG	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	660, 1076, 1146
SatI	GCNGC	2 cut(s)	381, 516
Sau3AI	GATC	5 cut(s)	264, 841, 876, 973, 1054
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	571, 1077
SduI	GDGCHC	1 cut(s)	226
SfcI	CTRYAG	4 cut(s)	378, 516, 606, 620
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	3 cut(s)	10, 98, 725
SmoI	CTYRAG	3 cut(s)	10, 98, 725
SphI	GCATGC	1 cut(s)	1030
Sse9I	AATT	7 cut(s)	126, 276, 362, 483, 563, 601, 1100
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	825, 1164
TaaI	ACNGT	3 cut(s)	235, 296, 1004
TaqI	TCGA	1 cut(s)	1086
TasI	AATT	7 cut(s)	126, 276, 362, 483, 563, 601, 1100
TatI	WGTACW	1 cut(s)	916
TfiI	GAWTC	3 cut(s)	91, 214, 799
Tru1I	TTAA	3 cut(s)	660, 1076, 1146
Tru9I	TTAA	3 cut(s)	660, 1076, 1146
TscAI	CASTG	4 cut(s)	264, 768, 773, 840
TseFI	GTSAC	2 cut(s)	311, 784
TseI	GCWGC	2 cut(s)	380, 515
Tsp45I	GTSAC	2 cut(s)	311, 784
TspDTI	ATGAA	7 cut(s)	315, 451, 513, 541, 792, 1082, 1167
TspRI	CASTG	4 cut(s)	264, 768, 773, 840
Tth111I	GACNNNGTC	1 cut(s)	951
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	2 cut(s)	601, 1100
XceI	RCATGY	2 cut(s)	685, 1030
XmiI	GTMKAC	1 cut(s)	999
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.