Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Forward (+)

8980560 .. 8986606

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10131.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTAGCTTTGGGGCGATGCTGAAACACCCAGATGACATATACCCTCTTTTGAAGTTGAAAATGGCGGCGAGGAATCTGGAGAAGCAGATCCCTCCGCAGCCTCATTGGGCTTTCTGCTACACCATGCTTCACAAAGTCTCTCGCAGCTTCGCTCTCGTTATTCAGCAGCTCGGCCCTGAGCTCCGCAATGCTGTTTGTATTTTTTATCTGGTTCTTCGAGCTCTAGACACTGTTGAGGATGATACAGCGGTAGAGACAGATGTCAAACTTCCTATCCTGATTGCTTTCCATCGTCACATATATGATCCCAAGTGGCATTTTGCATGTGGTACGAAGGAGTACAAAGTTCTCATGGACGAGTTTCATCATGTTGCAACTGCTTTTCTGGAACTTGGGAAGGGTTATCAGGAGGCAATTGAGGATATTACCAAAAGAATGGGGGCAGGGATGGCCAAGTTTATCTGCAAGGAGGTAGAAACAGTTGAGGACTATGATGAGTACTGCCACTATGTGGCAGGACTTGTTGGTTTAGGTTTGTCCAAGCTTTTCCATGCTGCTGAGTTGGAAGATTTGGCTACAGATGAACACTCAAATTCAATGGGCTTATTTCTTCAGAAAACAAACATTATTCGAGATTATCTGGAGGATATTAATGAAATACCCAAGTCACGCATGTTTTGGCCGCGCCAGATCTGGAGTAAATATGTTAACAAACTCGAGGACTTGAAATATGAAGAAAACTCAGACAAGGCAGTGCAGTGTTTGAATGACATGGTCACTAATTCTTTGCTACATATAGAAGACTGCTTGAAGTACATGTCTGATTTGAGAGATCCTGCTATATTTAAGTTTTGCGCTATCCCTCAGGTCATGGCAATTGGCACACTAGCACTATGCTACAACAACATTGAGGTCTTCAGAGGTGTGGTGAAAATGAGGCGTGGTCTTACAGCAAAAATCATTGATAAAACAAGAACGATGGCTGACGTCTATGCCGCTTTCTATGATTTTTCATCCATTATAAAGTCCAAGGTTGACAAGAAGGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAATCAGTGCAGAAAACATGCAGGGAGTCTGGAGCACTAACCAACAGGAAATCATATATAATCAAGAGTGAGCAGAGTTTCAATTCAGCTCTGATTATGGTGATGATTATCATATTGGCCATCATTTACGCTTATGTCTCTGCCAGCCCAAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

413

Amino Acids

47.18

Weight (kDa)

6.86

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	44 - 315	1.2e-54	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
AatII	GACGTC	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccII	CGCG	1 cut(s)	688
AciI	CCGC	6 cut(s)	68, 98, 187, 251, 686, 999
AclWI	GGATC	5 cut(s)	85, 302, 830, 1043, 1056
AcoI	YGGCCR	3 cut(s)	453, 683, 1197
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	599, 904
AcyI	GRCGYC	1 cut(s)	990
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	4 cut(s)	334, 344, 503, 818
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	7 cut(s)	55, 61, 600, 730, 769, 814, 1162
AluBI	AGCT	7 cut(s)	9, 150, 172, 184, 224, 547, 1169
AluI	AGCT	7 cut(s)	9, 150, 172, 184, 224, 547, 1169
Alw21I	GWGCWC	3 cut(s)	186, 226, 1117
Alw26I	GTCTC	3 cut(s)	145, 251, 1222
AlwI	GGATC	5 cut(s)	85, 302, 830, 1043, 1056
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	4 cut(s)	175, 453, 683, 1197
ApeKI	GCWGC	4 cut(s)	100, 147, 169, 557
ApoI	RAATTY	1 cut(s)	595
AseI	ATTAAT	1 cut(s)	654
AspLEI	GCGC	2 cut(s)	690, 860
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	943, 1192
AvaI	CYCGRG	1 cut(s)	719
AxyI	CCTNAGG	1 cut(s)	867
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	2 cut(s)	455, 1199
BamHI	GGATCC	1 cut(s)	1048
BanII	GRGCYC	2 cut(s)	186, 226
BbsI	GAAGAC	2 cut(s)	810, 910
Bbv12I	GWGCWC	3 cut(s)	186, 226, 1117
BbvI	GCAGC	4 cut(s)	112, 159, 181, 544
BccI	CCATC	4 cut(s)	300, 445, 976, 1208
BcoDI	GTCTC	3 cut(s)	145, 251, 1222
BfaI	CTAG	2 cut(s)	227, 890
BfmI	CTRYAG	1 cut(s)	579
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	7 cut(s)	69, 101, 148, 170, 558, 686, 999
BlsI	GCNGC	7 cut(s)	70, 102, 149, 171, 559, 687, 1000
BmcAI	AGTACT	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	1050
BmsI	GCATC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	810, 910
BpmI	CTGGAG	4 cut(s)	101, 665, 718, 1131
Bpu10I	CCTNAGC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	1187
BsaHI	GRCGYC	1 cut(s)	990
BsaJI	CCNNGG	1 cut(s)	1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	1187
BseDI	CCNNGG	1 cut(s)	1032
BseGI	GGATG	3 cut(s)	247, 456, 1016
BseJI	GATNNNNATC	1 cut(s)	1187
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	4 cut(s)	171, 552, 759, 881
BseXI	GCAGC	4 cut(s)	112, 159, 181, 544
BsgI	GTGCAG	2 cut(s)	779, 1109
Bsh1236I	CGCG	1 cut(s)	688
BshFI	GGCC	4 cut(s)	177, 455, 685, 1199
BsiHKAI	GWGCWC	3 cut(s)	186, 226, 1117
BsiHKCI	CYCGRG	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	3 cut(s)	145, 251, 1222
BsnI	GGCC	4 cut(s)	177, 455, 685, 1199
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	3 cut(s)	186, 226, 1117
Bsp143I	GATC	5 cut(s)	90, 307, 693, 835, 1048
BspACI	CCGC	6 cut(s)	68, 98, 187, 251, 686, 999
BspANI	GGCC	4 cut(s)	177, 455, 685, 1199
BspCNI	CTCAG	4 cut(s)	172, 553, 758, 880
BspFNI	CGCG	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	1050
BspPI	GGATC	5 cut(s)	85, 302, 830, 1043, 1056
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	1032
BssMI	GATC	5 cut(s)	90, 307, 693, 835, 1048
BssNI	GRCGYC	1 cut(s)	990
BssT1I	CCWWGG	1 cut(s)	1032
Bst4CI	ACNGT	2 cut(s)	235, 484
BstACI	GRCGYC	1 cut(s)	990
BstC8I	GCNNGC	2 cut(s)	1076, 1225
BstDEI	CTNAG	4 cut(s)	180, 561, 745, 867
BstF5I	GGATG	3 cut(s)	247, 456, 1016
BstFNI	CGCG	1 cut(s)	688
BstHHI	GCGC	2 cut(s)	690, 860
BstKTI	GATC	5 cut(s)	93, 310, 696, 838, 1051
BstMAI	GTCTC	3 cut(s)	145, 251, 1222
BstMBI	GATC	5 cut(s)	90, 307, 693, 835, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	4 cut(s)	330, 679, 823, 1101
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	4 cut(s)	112, 159, 181, 544
BstV2I	GAAGAC	2 cut(s)	810, 910
BstX2I	RGATCY	4 cut(s)	90, 693, 835, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	4 cut(s)	90, 693, 835, 1048
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	4 cut(s)	177, 455, 685, 1199
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	3 cut(s)	247, 456, 1016
BtsI	GCAGTG	2 cut(s)	762, 767
BtsIMutI	CAGTG	4 cut(s)	231, 762, 767, 1092
Cac8I	GCNNGC	2 cut(s)	1076, 1225
CfoI	GCGC	2 cut(s)	690, 860
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	4 cut(s)	333, 343, 502, 817
CviQI	GTAC	4 cut(s)	333, 343, 502, 817
DdeI	CTNAG	4 cut(s)	180, 561, 745, 867
DpnI	GATC	5 cut(s)	92, 309, 695, 837, 1050
DpnII	GATC	5 cut(s)	90, 307, 693, 835, 1048
DraIII	CACNNNGTG	1 cut(s)	514
EaeI	YGGCCR	3 cut(s)	453, 683, 1197
Ecl136II	GAGCTC	2 cut(s)	184, 224
Eco130I	CCWWGG	1 cut(s)	1032
Eco24I	GRGCYC	2 cut(s)	186, 226
Eco53kI	GAGCTC	2 cut(s)	184, 224
Eco57I	CTGAAG	2 cut(s)	599, 904
Eco81I	CCTNAGG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	2 cut(s)	184, 224
EcoT14I	CCWWGG	1 cut(s)	1032
EcoT38I	GRGCYC	2 cut(s)	186, 226
ErhI	CCWWGG	1 cut(s)	1032
Fnu4HI	GCNGC	7 cut(s)	69, 101, 148, 170, 558, 686, 999
FokI	GGATG	3 cut(s)	254, 463, 1003
FriOI	GRGCYC	2 cut(s)	186, 226
Fsp4HI	GCNGC	7 cut(s)	69, 101, 148, 170, 558, 686, 999
FspBI	CTAG	2 cut(s)	227, 890
GlaI	GCGC	2 cut(s)	689, 859
GluI	GCNGC	7 cut(s)	69, 101, 148, 170, 558, 686, 999
GsuI	CTGGAG	4 cut(s)	101, 665, 718, 1131
HaeIII	GGCC	4 cut(s)	177, 455, 685, 1199
HhaI	GCGC	2 cut(s)	690, 860
Hin1I	GRCGYC	1 cut(s)	990
Hin6I	GCGC	2 cut(s)	688, 858
HinP1I	GCGC	2 cut(s)	688, 858
HincII	GTYRAC	2 cut(s)	712, 1039
HindII	GTYRAC	2 cut(s)	712, 1039
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	4 cut(s)	76, 1082, 1106, 1233
HpaI	GTTAAC	1 cut(s)	712
HphI	GGTGA	2 cut(s)	943, 1192
Hpy166II	GTNNAC	2 cut(s)	712, 1039
Hpy188I	TCNGA	5 cut(s)	618, 748, 826, 923, 1173
Hpy8I	GTNNAC	2 cut(s)	712, 1039
HpyAV	CCTTC	3 cut(s)	331, 394, 1039
HpyCH4III	ACNGT	2 cut(s)	235, 484
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	7 cut(s)	326, 377, 468, 760, 1058, 1090, 1101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	4 cut(s)	180, 561, 745, 867
HpySE526I	ACGT	1 cut(s)	990
Hsp92I	GRCGYC	1 cut(s)	990
HspAI	GCGC	2 cut(s)	688, 858
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	90, 307, 693, 835, 1048
LmnI	GCTCC	2 cut(s)	189, 1112
Lsp1109I	GCAGC	4 cut(s)	112, 159, 181, 544
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	2 cut(s)	227, 890
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	3 cut(s)	296, 669, 778
MalI	GATC	5 cut(s)	92, 309, 695, 837, 1050
MboI	GATC	5 cut(s)	90, 307, 693, 835, 1048
MboII	GAAGA	6 cut(s)	209, 581, 605, 749, 815, 910
MfeI	CAATTG	2 cut(s)	417, 879
MflI	RGATCY	4 cut(s)	90, 693, 835, 1048
MhlI	GDGCHC	3 cut(s)	186, 226, 1117
MlsI	TGGCCA	2 cut(s)	455, 1199
MluCI	AATT	5 cut(s)	417, 595, 784, 879, 1162
MluNI	TGGCCA	2 cut(s)	455, 1199
MlyI	GAGTC	1 cut(s)	1115
MmeI	TCCRAC	1 cut(s)	546
Mox20I	TGGCCA	2 cut(s)	455, 1199
MscI	TGGCCA	2 cut(s)	455, 1199
MseI	TTAA	3 cut(s)	654, 711, 849
MslI	CAYNNNNRTG	2 cut(s)	33, 303
Msp20I	TGGCCA	2 cut(s)	455, 1199
MspA1I	CMGCKG	1 cut(s)	251
MunI	CAATTG	2 cut(s)	417, 879
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	5 cut(s)	90, 307, 693, 835, 1048
NlaIV	GGNNCC	1 cut(s)	1050
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	3 cut(s)	296, 669, 778
NspI	RCATGY	4 cut(s)	330, 679, 823, 1101
PaeR7I	CTCGAG	1 cut(s)	719
PciI	ACATGT	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	76, 1082, 1233
PflFI	GACNNNGTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	7 cut(s)	70, 102, 149, 171, 559, 687, 1000
PleI	GAGTC	1 cut(s)	1114
PpsI	GAGTC	1 cut(s)	1114
PscI	ACATGT	1 cut(s)	819
PshAI	GACNNNNGTC	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	1025
Psp124BI	GAGCTC	2 cut(s)	186, 226
PspN4I	GGNNCC	1 cut(s)	1050
PspPI	GGNCC	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	719
PsuI	RGATCY	4 cut(s)	90, 693, 835, 1048
PsyI	GACNNNGTC	1 cut(s)	776
RsaI	GTAC	4 cut(s)	334, 344, 503, 818
RsaNI	GTAC	4 cut(s)	333, 343, 502, 817
RseI	CAYNNNNRTG	2 cut(s)	33, 303
SacI	GAGCTC	2 cut(s)	186, 226
SaqAI	TTAA	3 cut(s)	654, 711, 849
SatI	GCNGC	7 cut(s)	69, 101, 148, 170, 558, 686, 999
Sau3AI	GATC	5 cut(s)	90, 307, 693, 835, 1048
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	1 cut(s)	1115
SduI	GDGCHC	3 cut(s)	186, 226, 1117
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	33, 303
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	5 cut(s)	417, 595, 784, 879, 1162
SsiI	CCGC	6 cut(s)	68, 98, 187, 251, 686, 999
SspMI	CTAG	2 cut(s)	227, 890
SstI	GAGCTC	2 cut(s)	186, 226
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	2 cut(s)	235, 484
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	3 cut(s)	220, 634, 720
TasI	AATT	5 cut(s)	417, 595, 784, 879, 1162
TatI	WGTACW	3 cut(s)	342, 501, 816
TauI	GCSGC	3 cut(s)	71, 688, 1001
TfiI	GAWTC	3 cut(s)	76, 1082, 1233
Tru1I	TTAA	3 cut(s)	654, 711, 849
Tru9I	TTAA	3 cut(s)	654, 711, 849
TscAI	CASTG	4 cut(s)	238, 762, 767, 1092
TseFI	GTSAC	3 cut(s)	296, 669, 778
TseI	GCWGC	4 cut(s)	100, 147, 169, 557
Tsp45I	GTSAC	3 cut(s)	296, 669, 778
TspDTI	ATGAA	5 cut(s)	356, 600, 672, 750, 1005
TspRI	CASTG	4 cut(s)	238, 762, 767, 1092
Tth111I	GACNNNGTC	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	1 cut(s)	595
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	4 cut(s)	330, 679, 823, 1101
XhoI	CTCGAG	1 cut(s)	719
XspI	CTAG	2 cut(s)	227, 890
ZraI	GACGTC	1 cut(s)	991
ZrmI	AGTACT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.