Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Forward (+)

3600838 .. 3604389

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGTCGTTCCTCCGGCAACGGCTCCCTCCGGTTCTTCTTCTTCTCCTCTCTCTCCTATTCCTCTCCTTACTCTCTCCCTCCACATCAACCGAGCTCGACCAACTCTTGAAGCTCAGAACCTCACTTGAAAGTTCAAACCCAACTCTGTTCAGTTCTTGGAAGCAAGAAAATCCCACGTGCCACTTCACTGGGATTGTCTGCAACTCAAATGGGCTGGTCTCAGAAATCAATCTTGCTCAGCAAAACCTTTCTGGCTCTCTTCCTTTCGACGCAATATGCTCGCTTCCACAACTAGAAAAGCTTTCTTTTGGTTCAAATTTCCTGCACGGAAGTCTCACTGAGGATTTGAAGAAGTGTACTAATTTGCAGGAACTGGATTTGGCTAAGAATTCTTTCACAGGAAAAGTACCTGAGTTGGGTTCTTTGAGTCAACTGAGGCTGTTGAGTCTGAATGCTAGTGGGGTGTCTGGACTTTTTCCATGGAAATCACTGGAGAATCTGACCGAGTTGGCTTTTCTGAGCCTTGGTGATAACAGATTCGATGCAAGTCCTATTGCAATGGAGTTGGGAAAGTTTGACAAGCTTTACTGGCTTTACCTCTCAAATTGTAGCATCACAGGTGAAATCCCAGAGGGTATTGGAAACCTGACTCTGCTTGAGAATCTGGAGCTTTCGGATAACCACTTGGTTGGTGACATTCCTCAGAGTATTACAAATCTCAAGAAGCTCAGGCAACTTGAGCTTTATGCTAATTACCTAACTGGGAAAATCCCACTTGGGCTTGGCAACCTCACAAGCCTTAGGAATTTTGATGTTTCAACTAACAAGCTTGAGGGTGATCTCTCTGAGCTCAAATCCTTGACAGGGCTTGAGTCTGTGCAGCTTTATGAGAATCAATTAGTTGGTGAAGTTCCAGAGGAGTTTGGAGAGTTCAAGAACCTTTATCAGCTCTCACTTTACAAGAACAAGCTCACTGGCCCTCTTCCTCAGAAGCTTGGTTCTTGGTCTGGCATGGAGTACATTGATGTTTCAGAGAACTATTTGACTGGCCCTATACCCCCTGACATGTGCAAAAATGAGAAACTGATTGATTTTCTGCTGCTGCAGAACAATTTCACAGGTGGGATTCCTGAGTCCTATGCAAATTGCAAGTCTTTAGTTCGGTTACGTGTGAATAACAATTCGCTTTCGGGTACTGTCCCTGTTGGAATTTGGAGCTTGCCAAGTGTTGTAGTTATGGATCTTTCTATGAATCAGTTTGAAGGTCCTCTGACTTCAGATGTTGGTAAGGCAAATTCTCTGTCATTATTACTCTTAGCTAATAATCGATTTTCGGGTGAATTGCCTGCTGCTTTGTCTGAAGCTACCTCATTGGTAACGATTCAGCTTAGTATGAACCAATTTGAGGGTCAAATCCCAGAAACAATTGGGAACTTGAAGAAATTAGGCAGTTTTCATTTAGAACAAAATTTGTTGTCTGGTGCTATACCGGAATCAATAGGCTCATGTGTTAGGATTTCTGAAATCAACCTTGCCCATAACAATCTTTCTGGCCAAATCCCTCCAAGTCTTGGATCATTGCCTAACTTAAACTCCTTGAACTTATCTGGAAACCAACTTTCAAATGAAGTTCCTACTACTTTGTCATCCCTCAAACTCAGCCTTCTTGATCTTACAAACAACCAGTTGATTGGCCGCGTGCCTGAGTCACTATCCATTGCAGCTTTTAATGAAAGCTTTGATGGAAATCCTGGTTTGTGCAGCCAGACCTTGAAGAATTTGCGGTCTTGTTCTTCAAATTCGGGCTCTCGTAGCCACCCACGGATATTTTTGTCTTCTTTTATTGCTGGAGTACTTGTTCTGCTTATTTTGCTTGGTGTGTTCTTGCTTTGGAAGCTAAGGAGGAGCAGTCTTGATCAACCATTGAAGAGTAATTCATGGACTATGAAGCAGTACCATGTGCTAACCTTCACAGAGAATGAAATCCTAGATTCAATCAAAGCTGAAAATTTGATTGGCAAAGGAGGGTCAGGAAATGTATACAAAGTACAACTGAGAGATGGGAAAGCACTTGCTGTGAAGCACATTTGGACCTCACCAGACTCCGGCCACCAGAAAACTTATCGAAGCACCACTTCCATTTTAAAGAAGTCGAAATCCAGCTCATCGGAGTATGATGCCGAGGTGGCCACACTGAGCTCTTTGAGGCATGTCAATGTGGTGAAGCTATACTGCAGCATAAGTAGTGAGGACAGCAATCTGCTAGTTTACGAGTACTTTCCCAATGGGAGCTTATGGGATCAGCTGCACATGAATCAGAAGGTCAAGATGGGATGGGAAGTGAGGTATGAGATTGCTTTGGGGGCTGCAAGAGGATTGGAGTATCTTCACCATGGTAGTCACAGACCTGTTATACACAGAGATGTGAAGTCTAGTAATATTCTGCTAGATGCAGATTGGAAGCCTAAAATTGCTGATTTTGGGCTTGCCAAGATTGTGCAGGCTGGTGGTGAAATGACTCATGTCATTGCTGGAACACTTGGCTACATAGCTCCTGAGTATGCATATACCTACAAGGTAAATGAGAAGAGTGATGTGTATAGCTTTGGGGTGGTCTTGATGGAATTGGTGACAGGAAGGAGGCCGGTGGAGACTGAGTTTGGAGAGAACAAGGACATAGTGAGCTGGGTCTGCAGCAAAATGCAGTGCAGAGAGAGTGAGCTTGAGTTGGTGGACTCGAGCATTGACGATGCGCTACAAGAAGATGCCCTCAACTTTTTGAGCATTGCAATTCTCTGCACCGCTAGGGTTCCGGTTCTAAGACCATCGATGAGAATGGTGGTTCAAATGCTGGAAGAGGCACAACCTTGTCAGCTCACCAGCATAAGCATTACCAAGGAAGGTGAAAACAACCCGAAAATGGCGCAAAATTACCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

980

Amino Acids

108.02

Weight (kDa)

5.61

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 68	3.7e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	163 - 298	5.9e-14	Leucine-rich repeat region
LRR_14	PF23598	407 - 550	6.4e-06	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	667 - 904	1.5e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	669 - 949	3.3e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1571
AccI	GTMKAC	1 cut(s)	2040
AccII	CGCG	1 cut(s)	1698
AciI	CCGC	3 cut(s)	1696, 1783, 2802
AclWI	GGATC	3 cut(s)	1248, 1582, 2307
AcoI	YGGCCR	4 cut(s)	1552, 1693, 2107, 2187
AcsI	RAATTY	9 cut(s)	316, 388, 805, 1209, 1294, 1468, 1777, 1798, 2008
AcuI	CTGAAG	2 cut(s)	1260, 1380
AcvI	CACGTG	1 cut(s)	177
AfaI	GTAC	8 cut(s)	358, 408, 1019, 1195, 1854, 1955, 2049, 2276
AfiI	CCNNNNNNNGG	6 cut(s)	416, 864, 1405, 1571, 2105, 2920
AflIII	ACRYGT	2 cut(s)	1065, 1168
AjnI	CCWGG	1 cut(s)	1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	1998, 2030
AloI	GAACNNNNNNTCC	2 cut(s)	1842, 1874
Alw21I	GWGCWC	3 cut(s)	96, 852, 2201
Alw26I	GTCTC	3 cut(s)	223, 338, 2645
AlwI	GGATC	3 cut(s)	1248, 1582, 2307
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	2737
AoxI	GGCC	7 cut(s)	976, 1048, 1552, 1693, 2107, 2187, 2642
ApoI	RAATTY	9 cut(s)	316, 388, 805, 1209, 1294, 1468, 1777, 1798, 2008
ArsI	GACNNNNNNTTYG	4 cut(s)	1136, 1168, 1286, 1318
Asp700I	GAANNNNTTC	2 cut(s)	392, 1112
AspLEI	GCGC	2 cut(s)	2755, 2926
AspS9I	GGNCC	4 cut(s)	977, 1049, 1265, 2091
AvaI	CYCGRG	1 cut(s)	2737
AvaII	GGWCC	2 cut(s)	1265, 2091
AxyI	CCTNAGG	1 cut(s)	800
BalI	TGGCCA	2 cut(s)	1554, 2189
BanII	GRGCYC	4 cut(s)	96, 852, 1808, 2201
BbrPI	CACGTG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	1827
Bbv12I	GWGCWC	3 cut(s)	96, 852, 2201
BccI	CCATC	6 cut(s)	1736, 2054, 2323, 2328, 2614, 2833
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	1 cut(s)	1752
BclI	TGATCA	1 cut(s)	1915
BcoDI	GTCTC	3 cut(s)	223, 338, 2645
BfaI	CTAG	7 cut(s)	293, 456, 1988, 2264, 2433, 2447, 2805
BfmI	CTRYAG	3 cut(s)	1103, 2233, 2692
BglI	GCCNNNNNGGC	1 cut(s)	2186
BlpI	GCTNAGC	1 cut(s)	237
BmcAI	AGTACT	2 cut(s)	1854, 2276
Bme1390I	CCNGG	1 cut(s)	1752
Bme18I	GGWCC	2 cut(s)	1265, 2091
BmeT110I	CYCGRG	1 cut(s)	2737
BmgT120I	GGNCC	4 cut(s)	977, 1049, 1265, 2091
BmiI	GGNNCC	2 cut(s)	23, 2811
BmrFI	CCNGG	1 cut(s)	1752
BmrI	ACTGGG	2 cut(s)	198, 771
BmsI	GCATC	6 cut(s)	532, 621, 2167, 2440, 2740, 2755
BmuI	ACTGGG	2 cut(s)	198, 771
BoxI	GACNNNNGTC	1 cut(s)	2522
BpiI	GAAGAC	1 cut(s)	1827
BpmI	CTGGAG	3 cut(s)	512, 686, 1869
Bpu10I	CCTNAGC	2 cut(s)	728, 1898
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	6 cut(s)	677, 704, 758, 851, 890, 2744
Bsa29I	ATCGAT	2 cut(s)	1327, 2828
BsaAI	YACGTR	2 cut(s)	177, 1169
BsaBI	GATNNNNATC	1 cut(s)	1746
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	6 cut(s)	479, 523, 1820, 2181, 2392, 2895
BsaWI	WCCGGW	3 cut(s)	28, 1489, 2812
BsaXI	ACNNNNNCTCC	8 cut(s)	1577, 1607, 1842, 1872, 1894, 1924, 2642, 2672
Bsc4I	CCNNNNNNNGG	6 cut(s)	416, 864, 1405, 1571, 2105, 2920
Bse118I	RCCGGY	1 cut(s)	2644
Bse1I	ACTGG	8 cut(s)	193, 378, 495, 593, 766, 979, 1051, 1684
Bse21I	CCTNAGG	1 cut(s)	800
Bse3DI	GCAATG	5 cut(s)	564, 1577, 1716, 2526, 2784
Bse8I	GATNNNNATC	1 cut(s)	1746
BseBI	CCWGG	1 cut(s)	1752
BseCI	ATCGAT	2 cut(s)	1327, 2828
BseDI	CCNNGG	6 cut(s)	479, 523, 1820, 2181, 2392, 2895
BseGI	GGATG	2 cut(s)	1646, 2339
BseJI	GATNNNNATC	1 cut(s)	1746
BseLI	CCNNNNNNNGG	6 cut(s)	416, 864, 1405, 1571, 2105, 2920
BseMI	GCAATG	5 cut(s)	564, 1577, 1716, 2526, 2784
BseNI	ACTGG	8 cut(s)	193, 378, 495, 593, 766, 979, 1051, 1684
BseRI	GAGGAG	3 cut(s)	35, 932, 1918
BseYI	CCCAGC	1 cut(s)	2685
BsgI	GTGCAG	7 cut(s)	308, 899, 1780, 2291, 2519, 2728, 2782
Bsh1236I	CGCG	1 cut(s)	1698
BshFI	GGCC	7 cut(s)	978, 1050, 1554, 1695, 2109, 2189, 2644
BshVI	ATCGAT	2 cut(s)	1327, 2828
BsiHKAI	GWGCWC	3 cut(s)	96, 852, 2201
BsiHKCI	CYCGRG	1 cut(s)	2737
BsiSI	CCGG	6 cut(s)	13, 29, 1490, 2106, 2645, 2813
BslFI	GGGAC	1 cut(s)	1184
BslI	CCNNNNNNNGG	6 cut(s)	416, 864, 1405, 1571, 2105, 2920
BsmAI	GTCTC	3 cut(s)	223, 338, 2645
BsmFI	GGGAC	1 cut(s)	1184
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	7 cut(s)	978, 1050, 1554, 1695, 2109, 2189, 2644
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	2737
Bsp1286I	GDGCHC	4 cut(s)	96, 852, 1808, 2201
Bsp143I	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
Bsp1720I	GCTNAGC	1 cut(s)	237
Bsp19I	CCATGG	2 cut(s)	479, 2392
BspACI	CCGC	3 cut(s)	1696, 1783, 2802
BspANI	GGCC	7 cut(s)	978, 1050, 1554, 1695, 2109, 2189, 2644
BspDI	ATCGAT	2 cut(s)	1327, 2828
BspFNI	CGCG	1 cut(s)	1698
BspLI	GGNNCC	2 cut(s)	23, 2811
BspMAI	CTGCAG	3 cut(s)	1107, 2237, 2696
BspPI	GGATC	3 cut(s)	1248, 1582, 2307
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	5 cut(s)	564, 1577, 1716, 2526, 2784
BsrFI	RCCGGY	1 cut(s)	2644
BsrI	ACTGG	8 cut(s)	193, 378, 495, 593, 766, 979, 1051, 1684
BssAI	RCCGGY	1 cut(s)	2644
BssECI	CCNNGG	6 cut(s)	479, 523, 1820, 2181, 2392, 2895
BssMI	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
BssNAI	GTATAC	1 cut(s)	2041
BssT1I	CCWWGG	4 cut(s)	479, 523, 2392, 2895
Bst1107I	GTATAC	1 cut(s)	2041
Bst2UI	CCWGG	1 cut(s)	1752
Bst4CI	ACNGT	1 cut(s)	1198
Bst6I	CTCTTC	5 cut(s)	264, 987, 1922, 2582, 2850
BstBAI	YACGTR	2 cut(s)	177, 1169
BstC8I	GCNNGC	6 cut(s)	281, 1220, 1347, 1700, 2487, 2502
BstDSI	CCRYGG	3 cut(s)	479, 1820, 2392
BstF5I	GGATG	2 cut(s)	1646, 2339
BstFNI	CGCG	1 cut(s)	1698
BstHHI	GCGC	2 cut(s)	2755, 2926
BstKTI	GATC	6 cut(s)	841, 1243, 1577, 1672, 1918, 2302
BstMAI	GTCTC	3 cut(s)	223, 338, 2645
BstMBI	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
BstMWI	GCNNNNNNNGC	8 cut(s)	589, 739, 1812, 1870, 1894, 2186, 2363, 2691
BstNI	CCWGG	1 cut(s)	1752
BstNSI	RCATGY	2 cut(s)	1069, 2213
BstPAI	GACNNNNGTC	1 cut(s)	2522
BstSCI	CCNGG	1 cut(s)	1750
BstSFI	CTRYAG	3 cut(s)	1103, 2233, 2692
BstUI	CGCG	1 cut(s)	1698
BstV2I	GAAGAC	1 cut(s)	1827
BstX2I	RGATCY	1 cut(s)	1240
BstXI	CCANNNNNNTGG	3 cut(s)	188, 689, 1691
BstYI	RGATCY	1 cut(s)	1240
BstZ17I	GTATAC	1 cut(s)	2041
Bsu15I	ATCGAT	2 cut(s)	1327, 2828
Bsu36I	CCTNAGG	1 cut(s)	800
BsuRI	GGCC	7 cut(s)	978, 1050, 1554, 1695, 2109, 2189, 2644
BsuTUI	ATCGAT	2 cut(s)	1327, 2828
BtgI	CCRYGG	3 cut(s)	479, 1820, 2392
BtsCI	GGATG	2 cut(s)	1646, 2339
BtsI	GCAGTG	1 cut(s)	2711
BtsIMutI	CAGTG	6 cut(s)	186, 336, 488, 972, 2192, 2711
Cac8I	GCNNGC	6 cut(s)	281, 1220, 1347, 1700, 2487, 2502
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	2 cut(s)	2755, 2926
Cfr10I	RCCGGY	1 cut(s)	2644
Cfr13I	GGNCC	4 cut(s)	977, 1049, 1265, 2091
ClaI	ATCGAT	2 cut(s)	1327, 2828
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	8 cut(s)	357, 407, 1018, 1194, 1853, 1954, 2048, 2275
CviQI	GTAC	8 cut(s)	357, 407, 1018, 1194, 1853, 1954, 2048, 2275
DpnI	GATC	6 cut(s)	840, 1242, 1576, 1671, 1917, 2301
DpnII	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
DraI	TTTAAA	1 cut(s)	2145
EaeI	YGGCCR	4 cut(s)	1552, 1693, 2107, 2187
Eam1104I	CTCTTC	5 cut(s)	264, 987, 1922, 2582, 2850
EarI	CTCTTC	5 cut(s)	264, 987, 1922, 2582, 2850
Ecl136II	GAGCTC	3 cut(s)	94, 850, 2199
Eco130I	CCWWGG	4 cut(s)	479, 523, 2392, 2895
Eco24I	GRGCYC	4 cut(s)	96, 852, 1808, 2201
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	1265, 2091
Eco53kI	GAGCTC	3 cut(s)	94, 850, 2199
Eco57I	CTGAAG	2 cut(s)	1260, 1380
Eco72I	CACGTG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	2737
EcoICRI	GAGCTC	3 cut(s)	94, 850, 2199
EcoO109I	RGGNCCY	1 cut(s)	1265
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	1750
EcoT14I	CCWWGG	4 cut(s)	479, 523, 2392, 2895
EcoT22I	ATGCAT	1 cut(s)	2566
EcoT38I	GRGCYC	4 cut(s)	96, 852, 1808, 2201
ErhI	CCWWGG	4 cut(s)	479, 523, 2392, 2895
FalI	AAGNNNNNCTT	2 cut(s)	2119, 2151
FaqI	GGGAC	1 cut(s)	1184
FbaI	TGATCA	1 cut(s)	1915
FblI	GTMKAC	1 cut(s)	2040
FokI	GGATG	2 cut(s)	1633, 2346
FriOI	GRGCYC	4 cut(s)	96, 852, 1808, 2201
FspBI	CTAG	7 cut(s)	293, 456, 1988, 2264, 2433, 2447, 2805
GlaI	GCGC	2 cut(s)	2754, 2925
GsaI	CCCAGC	1 cut(s)	2689
GsuI	CTGGAG	3 cut(s)	512, 686, 1869
HaeIII	GGCC	7 cut(s)	978, 1050, 1554, 1695, 2109, 2189, 2644
HapII	CCGG	6 cut(s)	13, 29, 1490, 2106, 2645, 2813
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	2755, 2926
Hin6I	GCGC	2 cut(s)	2753, 2924
HinP1I	GCGC	2 cut(s)	2753, 2924
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HindIII	AAGCTT	5 cut(s)	299, 581, 827, 992, 1735
HpaII	CCGG	6 cut(s)	13, 29, 1490, 2106, 2645, 2813
Hpy166II	GTNNAC	5 cut(s)	357, 431, 2041, 2269, 2734
Hpy8I	GTNNAC	5 cut(s)	357, 431, 2041, 2269, 2734
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	6 cut(s)	1256, 1673, 1978, 2314, 2631, 2894
HpyCH4III	ACNGT	1 cut(s)	1198
HpyCH4IV	ACGT	2 cut(s)	176, 1168
HpyF10VI	GCNNNNNNNGC	8 cut(s)	589, 739, 1812, 1870, 1894, 2186, 2363, 2691
HpySE526I	ACGT	2 cut(s)	176, 1168
HspAI	GCGC	2 cut(s)	2753, 2924
Ksp22I	TGATCA	1 cut(s)	1915
Kzo9I	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
LmnI	GCTCC	6 cut(s)	27, 667, 1215, 1905, 2289, 2557
LweI	GCATC	6 cut(s)	532, 621, 2167, 2440, 2740, 2755
MaeI	CTAG	7 cut(s)	293, 456, 1988, 2264, 2433, 2447, 2805
MaeII	ACGT	2 cut(s)	176, 1168
MaeIII	GTNAC	6 cut(s)	692, 1164, 1375, 1707, 2399, 2629
MalI	GATC	6 cut(s)	840, 1242, 1576, 1671, 1917, 2301
MboI	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
MfeI	CAATTG	1 cut(s)	1425
MflI	RGATCY	1 cut(s)	1240
MhlI	GDGCHC	4 cut(s)	96, 852, 1808, 2201
MlsI	TGGCCA	2 cut(s)	1554, 2189
MluNI	TGGCCA	2 cut(s)	1554, 2189
MlyI	GAGTC	9 cut(s)	436, 454, 643, 881, 1142, 1715, 2096, 2512, 2729
MmeI	TCCRAC	1 cut(s)	1186
Mox20I	TGGCCA	2 cut(s)	1554, 2189
Mph1103I	ATGCAT	1 cut(s)	2566
MroXI	GAANNNNTTC	2 cut(s)	392, 1112
MscI	TGGCCA	2 cut(s)	1554, 2189
MseI	TTAA	3 cut(s)	1589, 1728, 2144
MslI	CAYNNNNRTG	2 cut(s)	2214, 2421
Msp20I	TGGCCA	2 cut(s)	1554, 2189
MspA1I	CMGCKG	1 cut(s)	2305
MspI	CCGG	6 cut(s)	13, 29, 1490, 2106, 2645, 2813
MspR9I	CCNGG	1 cut(s)	1752
MunI	CAATTG	1 cut(s)	1425
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	1752
MvnI	CGCG	1 cut(s)	1698
MwoI	GCNNNNNNNGC	8 cut(s)	589, 739, 1812, 1870, 1894, 2186, 2363, 2691
NcoI	CCATGG	2 cut(s)	479, 2392
NdeII	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
NlaIV	GGNNCC	2 cut(s)	23, 2811
NmeAIII	GCCGAG	1 cut(s)	2206
NmuCI	GTSAC	4 cut(s)	692, 1707, 2399, 2629
NsiI	ATGCAT	1 cut(s)	2566
NspI	RCATGY	2 cut(s)	1069, 2213
PaeR7I	CTCGAG	1 cut(s)	2737
PciI	ACATGT	1 cut(s)	1065
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	2 cut(s)	392, 1112
PflMI	CCANNNNNTGG	1 cut(s)	1571
PleI	GAGTC	9 cut(s)	435, 453, 643, 880, 1141, 1714, 2096, 2512, 2729
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	9 cut(s)	435, 453, 643, 880, 1141, 1714, 2096, 2512, 2729
Ppu21I	YACGTR	2 cut(s)	177, 1169
PpuMI	RGGWCCY	1 cut(s)	1265
PscI	ACATGT	1 cut(s)	1065
PshAI	GACNNNNGTC	1 cut(s)	2522
Psp124BI	GAGCTC	3 cut(s)	96, 852, 2201
Psp5II	RGGWCCY	1 cut(s)	1265
Psp6I	CCWGG	1 cut(s)	1750
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	2685
PspGI	CCWGG	1 cut(s)	1750
PspN4I	GGNNCC	2 cut(s)	23, 2811
PspPI	GGNCC	4 cut(s)	977, 1049, 1265, 2091
PspPPI	RGGWCCY	1 cut(s)	1265
PspXI	VCTCGAGB	1 cut(s)	2737
PstI	CTGCAG	3 cut(s)	1107, 2237, 2696
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	1240
PvuII	CAGCTG	1 cut(s)	2305
RsaI	GTAC	8 cut(s)	358, 408, 1019, 1195, 1854, 1955, 2049, 2276
RsaNI	GTAC	8 cut(s)	357, 407, 1018, 1194, 1853, 1954, 2048, 2275
RseI	CAYNNNNRTG	2 cut(s)	2214, 2421
SacI	GAGCTC	3 cut(s)	96, 852, 2201
SaqAI	TTAA	3 cut(s)	1589, 1728, 2144
Sau3AI	GATC	6 cut(s)	838, 1240, 1574, 1669, 1915, 2299
Sau96I	GGNCC	4 cut(s)	977, 1049, 1265, 2091
ScaI	AGTACT	2 cut(s)	1854, 2276
SchI	GAGTC	9 cut(s)	436, 454, 643, 881, 1142, 1715, 2096, 2512, 2729
ScrFI	CCNGG	1 cut(s)	1752
SduI	GDGCHC	4 cut(s)	96, 852, 1808, 2201
SfaNI	GCATC	6 cut(s)	532, 621, 2167, 2440, 2740, 2755
SfcI	CTRYAG	3 cut(s)	1103, 2233, 2692
Sfr274I	CTCGAG	1 cut(s)	2737
SinI	GGWCC	2 cut(s)	1265, 2091
SlaI	CTCGAG	1 cut(s)	2737
SmiMI	CAYNNNNRTG	2 cut(s)	2214, 2421
SmlI	CTYRAG	7 cut(s)	656, 719, 737, 830, 869, 2723, 2737
SmoI	CTYRAG	7 cut(s)	656, 719, 737, 830, 869, 2723, 2737
SsiI	CCGC	3 cut(s)	1696, 1783, 2802
SspI	AATATT	1 cut(s)	2440
SspMI	CTAG	7 cut(s)	293, 456, 1988, 2264, 2433, 2447, 2805
SstI	GAGCTC	3 cut(s)	96, 852, 2201
StyD4I	CCNGG	1 cut(s)	1750
StyI	CCWWGG	4 cut(s)	479, 523, 2392, 2895
TaaI	ACNGT	1 cut(s)	1198
TaiI	ACGT	2 cut(s)	179, 1171
TaqI	TCGA	8 cut(s)	96, 267, 540, 1327, 2125, 2153, 2738, 2828
TaqII	GACCGA	1 cut(s)	518
TatI	WGTACW	5 cut(s)	356, 1017, 1852, 2047, 2274
TauI	GCSGC	1 cut(s)	1698
Tru1I	TTAA	3 cut(s)	1589, 1728, 2144
Tru9I	TTAA	3 cut(s)	1589, 1728, 2144
TscAI	CASTG	6 cut(s)	193, 343, 495, 979, 2199, 2711
TseFI	GTSAC	4 cut(s)	692, 1707, 2399, 2629
Tsp45I	GTSAC	4 cut(s)	692, 1707, 2399, 2629
TspDTI	ATGAA	9 cut(s)	1265, 1409, 1445, 1641, 1746, 1926, 1961, 1995, 2327
TspGWI	ACGGA	2 cut(s)	342, 1837
TspRI	CASTG	6 cut(s)	193, 343, 495, 979, 2199, 2711
Van91I	CCANNNNNTGG	1 cut(s)	1571
VpaK11BI	GGWCC	2 cut(s)	1265, 2091
XapI	RAATTY	9 cut(s)	316, 388, 805, 1209, 1294, 1468, 1777, 1798, 2008
XceI	RCATGY	2 cut(s)	1069, 2213
XhoI	CTCGAG	1 cut(s)	2737
XmiI	GTMKAC	1 cut(s)	2040
XmnI	GAANNNNTTC	2 cut(s)	392, 1112
XspI	CTAG	7 cut(s)	293, 456, 1988, 2264, 2433, 2447, 2805
ZrmI	AGTACT	2 cut(s)	1854, 2276
Zsp2I	ATGCAT	1 cut(s)	2566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.