Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Reverse (-)

9923896 .. 9931962

Gene Structure 8067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1056800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTGCCTTGTCGACCATGCTCAAACACCCCGATGACATTTACCCTCTTCTGAAGCTCAAAATTGCATCGAGGCAAATCGAAAAGCAGATCCCGGCAGAGCCCCATTGGGCTTTCTGCTACACCATGCTCCAGAAGGTCTCTCGTAGTTTCGCTCTCGTTATTCAACAGCTCGGTACAGAGCTCCGCAACGCTGTCTGTCTATTTTACCTGGTTCTTCGAGCTCTAGACACTGTCGAGGATGATACAAGCGTTGCAACGGATGTCAAAGTCCCTATCTTGTTAGCATTTCATCGGCACATATATGATCCCGATTGGCATTTTGCTTGTGGTACAAATAATTACAAAGTTCTCATGGACGAGTTCCATCATGTTTCAACTGCTTTTTTGGAACTCGGGACAGGTTATCAGGAGGCAATTGAGGATATTACCAAAAGAATGGGTGCGGGAATGGCAAAATTTATCTTGAAGGAGGTAGAAACCATTGATGACTATGATGAATACTGCCACTATGTGGCAGGACTTGTTGGTTTAGGTTTGTCCAAGCTCTTCCATGCTGCTGGTAAGGAAGATTTGGCCTCAGACTCACTCTCAAATTCAATGGGCTTATTTCTTCAGAAAACAAACATCATTCGGGATTATTTGGAGGATATTAATGAGATACCAAAGTCACGCATGTTTTGGCCACGCCAAATCTGGAGTAAATATGTCAATAAACTTGAGGACTTGAAATATGAGGAAAACTCAGAGAAGGCAGTGCAATGCTTAAACGACATGGTAACTAATGCTTTGATACATATGGAAGATTGCTTGAAGTACATGGCTGCATTAAGAGATCCTGCTATATTTAAATTTTGTGCCATCCCTCAGATCATGGCAATTGGCACCCTAGCATTGTGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTCAAAATGAGGCGAGGTCTTACAGCAAAAGTTATTGACAGAACAAAATCAATGGATGATGTCTATGGTGCTTTCTTTGATTTTTCTTCCATTCTAAAGTCTAAGGTTGACAAGAATGATCCTAATGCAACAAAAACATTGAGCAGAGTGGAAGCGGTACAGAAATTATGTAGAGACTCTGGAGCTCTGAGCAAAAGGAAATCTTACATCGCCAACCGCGAACAAAGCTACAATTCAACTCTGATTGTGGCATTGTTTATTATATTGGCAATCATTTACGCTTATCTCTCTGCTAGCCCAAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

413

Amino Acids

46.84

Weight (kDa)

6.8

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	44 - 315	1e-53	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 884
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	1149
AciI	CCGC	4 cut(s)	187, 446, 1085, 1147
AclWI	GGATC	4 cut(s)	85, 302, 830, 1043
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	458, 595, 851
AcuI	CTGAAG	3 cut(s)	74, 599, 904
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	4 cut(s)	178, 334, 818, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	7 cut(s)	167, 378, 469, 600, 730, 814, 1167
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	7 cut(s)	58, 172, 184, 224, 547, 1115, 1158
AluI	AGCT	7 cut(s)	58, 172, 184, 224, 547, 1115, 1158
Alw21I	GWGCWC	3 cut(s)	186, 226, 1117
Alw26I	GTCTC	2 cut(s)	145, 1098
AlwI	GGATC	4 cut(s)	85, 302, 830, 1043
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	576, 683
ApeKI	GCWGC	2 cut(s)	557, 824
ApoI	RAATTY	3 cut(s)	458, 595, 851
AseI	ATTAAT	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	1223
AvaI	CYCGRG	1 cut(s)	395
BaeI	ACNNNNGTAYC	4 cut(s)	237, 270, 653, 686
BalI	TGGCCA	1 cut(s)	685
BanI	GGYRCC	2 cut(s)	5, 884
BanII	GRGCYC	4 cut(s)	105, 186, 226, 1117
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	3 cut(s)	186, 226, 1117
BbvI	GCAGC	2 cut(s)	544, 811
BccI	CCATC	2 cut(s)	375, 869
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	145, 1098
BfaI	CTAG	3 cut(s)	227, 890, 1224
BisI	GCNGC	2 cut(s)	558, 825
BlsI	GCNGC	2 cut(s)	559, 826
Bme1390I	CCNGG	2 cut(s)	95, 212
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	7, 886
BmrFI	CCNGG	2 cut(s)	95, 212
BmsI	GCATC	1 cut(s)	77
BmtI	GCTAGC	1 cut(s)	1227
BpiI	GAAGAC	1 cut(s)	910
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	3 cut(s)	116, 718, 1131
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	4 cut(s)	247, 268, 861, 991
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	4 cut(s)	594, 759, 881, 1109
BseXI	GCAGC	2 cut(s)	544, 811
Bsh1236I	CGCG	1 cut(s)	1149
BshFI	GGCC	2 cut(s)	578, 685
BshNI	GGYRCC	2 cut(s)	5, 884
BsiHKAI	GWGCWC	3 cut(s)	186, 226, 1117
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	257, 412
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	145, 1098
BsmFI	GGGAC	2 cut(s)	257, 412
BsnI	GGCC	2 cut(s)	578, 685
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	4 cut(s)	105, 186, 226, 1117
Bsp143I	GATC	5 cut(s)	90, 307, 835, 870, 1048
BspACI	CCGC	4 cut(s)	187, 446, 1085, 1147
BspANI	GGCC	2 cut(s)	578, 685
BspCNI	CTCAG	4 cut(s)	593, 758, 880, 1110
BspFNI	CGCG	1 cut(s)	1149
BspLI	GGNNCC	2 cut(s)	7, 886
BspOI	GCTAGC	1 cut(s)	1227
BspPI	GGATC	4 cut(s)	85, 302, 830, 1043
BspQI	GCTCTTC	1 cut(s)	554
BspT107I	GGYRCC	2 cut(s)	5, 884
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	767
BssMI	GATC	5 cut(s)	90, 307, 835, 870, 1048
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	54, 554
BstC8I	GCNNGC	1 cut(s)	1225
BstDEI	CTNAG	5 cut(s)	580, 745, 867, 1032, 1118
BstF5I	GGATG	4 cut(s)	247, 268, 861, 991
BstFNI	CGCG	1 cut(s)	1149
BstKTI	GATC	5 cut(s)	93, 310, 838, 873, 1051
BstMAI	GTCTC	2 cut(s)	145, 1098
BstMBI	GATC	5 cut(s)	90, 307, 835, 870, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 1155
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	2 cut(s)	93, 210
BstUI	CGCG	1 cut(s)	1149
BstV1I	GCAGC	2 cut(s)	544, 811
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	2 cut(s)	90, 835
BstXI	CCANNNNNNTGG	2 cut(s)	439, 560
BstYI	RGATCY	2 cut(s)	90, 835
BsuRI	GGCC	2 cut(s)	578, 685
BtgZI	GCGATG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	247, 268, 861, 991
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	231, 762
Cac8I	GCNNGC	1 cut(s)	1225
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	4 cut(s)	177, 333, 817, 1088
CviAII	CATG	9 cut(s)	19, 127, 355, 371, 554, 676, 775, 820, 874
CviQI	GTAC	4 cut(s)	177, 333, 817, 1088
DdeI	CTNAG	5 cut(s)	580, 745, 867, 1032, 1118
DpnI	GATC	5 cut(s)	92, 309, 837, 872, 1050
DpnII	GATC	5 cut(s)	90, 307, 835, 870, 1048
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	2 cut(s)	54, 554
EarI	CTCTTC	2 cut(s)	54, 554
Ecl136II	GAGCTC	3 cut(s)	184, 224, 1115
Eco24I	GRGCYC	4 cut(s)	105, 186, 226, 1117
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	3 cut(s)	184, 224, 1115
Eco57I	CTGAAG	3 cut(s)	74, 599, 904
Eco88I	CYCGRG	1 cut(s)	395
EcoICRI	GAGCTC	3 cut(s)	184, 224, 1115
EcoRII	CCWGG	1 cut(s)	210
EcoT38I	GRGCYC	4 cut(s)	105, 186, 226, 1117
FaeI	CATG	9 cut(s)	22, 130, 358, 374, 557, 679, 778, 823, 877
FalI	AAGNNNNNCTT	2 cut(s)	1117, 1149
FaqI	GGGAC	2 cut(s)	257, 412
FatI	CATG	9 cut(s)	18, 126, 354, 370, 553, 675, 774, 819, 873
FauI	CCCGC	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	798
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	558, 825
FokI	GGATG	4 cut(s)	254, 275, 848, 998
FriOI	GRGCYC	4 cut(s)	105, 186, 226, 1117
Fsp4HI	GCNGC	2 cut(s)	558, 825
FspBI	CTAG	3 cut(s)	227, 890, 1224
GluI	GCNGC	2 cut(s)	558, 825
GsuI	CTGGAG	3 cut(s)	116, 718, 1131
HaeIII	GGCC	2 cut(s)	578, 685
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	9 cut(s)	22, 130, 358, 374, 557, 679, 778, 823, 877
HincII	GTYRAC	2 cut(s)	15, 1039
HindII	GTYRAC	2 cut(s)	15, 1039
HinfI	GANTC	3 cut(s)	584, 1106, 1233
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	15, 1039
Hpy188I	TCNGA	8 cut(s)	54, 583, 618, 748, 870, 923, 1119, 1173
Hpy188III	TCNNGA	9 cut(s)	133, 227, 311, 397, 410, 466, 635, 697, 1110
Hpy8I	GTNNAC	2 cut(s)	15, 1039
HpyAV	CCTTC	3 cut(s)	130, 463, 745
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	68, 257, 760, 827, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 1155
HpyF3I	CTNAG	5 cut(s)	580, 745, 867, 1032, 1118
Hsp92II	CATG	9 cut(s)	22, 130, 358, 374, 557, 679, 778, 823, 877
Kzo9I	GATC	5 cut(s)	90, 307, 835, 870, 1048
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	3 cut(s)	135, 189, 1112
Lsp1109I	GCAGC	2 cut(s)	544, 811
LweI	GCATC	1 cut(s)	77
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	3 cut(s)	227, 890, 1224
MaeIII	GTNAC	2 cut(s)	669, 778
MalI	GATC	5 cut(s)	92, 309, 837, 872, 1050
MboI	GATC	5 cut(s)	90, 307, 835, 870, 1048
MboII	GAAGA	8 cut(s)	41, 209, 541, 581, 605, 815, 910, 1008
MfeI	CAATTG	2 cut(s)	417, 879
MflI	RGATCY	2 cut(s)	90, 835
MhlI	GDGCHC	4 cut(s)	105, 186, 226, 1117
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	9 cut(s)	63, 340, 417, 458, 595, 851, 879, 1094, 1162
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	2 cut(s)	578, 1100
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	4 cut(s)	654, 767, 830, 849
MslI	CAYNNNNRTG	2 cut(s)	33, 303
Msp20I	TGGCCA	1 cut(s)	685
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	95, 212
MunI	CAATTG	2 cut(s)	417, 879
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	2 cut(s)	452, 1155
NciI	CCSGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	5 cut(s)	90, 307, 835, 870, 1048
NheI	GCTAGC	1 cut(s)	1223
NlaIII	CATG	9 cut(s)	22, 130, 358, 374, 557, 679, 778, 823, 877
NlaIV	GGNNCC	2 cut(s)	7, 886
NmuCI	GTSAC	1 cut(s)	669
NspI	RCATGY	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	1146
PfeI	GAWTC	1 cut(s)	1233
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	559, 826
PleI	GAGTC	2 cut(s)	578, 1100
PpsI	GAGTC	2 cut(s)	578, 1100
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	3 cut(s)	186, 226, 1117
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	7, 886
PsuI	RGATCY	2 cut(s)	90, 835
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	4 cut(s)	178, 334, 818, 1089
RsaNI	GTAC	4 cut(s)	177, 333, 817, 1088
RseI	CAYNNNNRTG	2 cut(s)	33, 303
SacI	GAGCTC	3 cut(s)	186, 226, 1117
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	4 cut(s)	654, 767, 830, 849
SatI	GCNGC	2 cut(s)	558, 825
Sau3AI	GATC	5 cut(s)	90, 307, 835, 870, 1048
SchI	GAGTC	2 cut(s)	578, 1100
ScrFI	CCNGG	2 cut(s)	95, 212
SduI	GDGCHC	4 cut(s)	105, 186, 226, 1117
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	77
SmiI	ATTTAAAT	1 cut(s)	850
SmiMI	CAYNNNNRTG	2 cut(s)	33, 303
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	9 cut(s)	63, 340, 417, 458, 595, 851, 879, 1094, 1162
SsiI	CCGC	4 cut(s)	187, 446, 1085, 1147
SspMI	CTAG	3 cut(s)	227, 890, 1224
SstI	GAGCTC	3 cut(s)	186, 226, 1117
StyD4I	CCNGG	2 cut(s)	93, 210
SwaI	ATTTAAAT	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	5 cut(s)	14, 71, 81, 220, 237
TasI	AATT	9 cut(s)	63, 340, 417, 458, 595, 851, 879, 1094, 1162
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	1 cut(s)	1233
Tru1I	TTAA	4 cut(s)	654, 767, 830, 849
Tru9I	TTAA	4 cut(s)	654, 767, 830, 849
TscAI	CASTG	2 cut(s)	238, 762
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	2 cut(s)	557, 824
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	2 cut(s)	281, 513
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	238, 762
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	3 cut(s)	458, 595, 851
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	3 cut(s)	227, 890, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.