Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012919

Physical Location & Seq

Genomic Coordinates Reverse (-)

8840618 .. 8848877

Gene Structure 8260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1064900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTGCCTTGTCGACCATGATCAAACACCCCGACGACATTTACCCGCTTCTGAAGCTCAAAATTGCATCGAGGCATGTCGAGAAGCAGATCCCGTCAGAGCCCCATTGGGCTTTCTGCTACACCATGCTCCAGAAGGTCTCTCGTAGTTTCGCTCTTGTTATTCAACAGCTCGATACAGAGCTCCGCAACGCTGTCTGTATATTTTATCTGGTTCTTAGAGCTCTAGACACTGTCGAGGATGATACAAGCATTGCAACAGACGTCAAAGTCCCTATCTTGTTAGCATTTCATCAGCACATATATGATCCCGAGTGGCATTTTGCATGTGGTACAAATAACTACAAAGTTCTCATGGACGAGTTCCATCATGTTTCAACTGCTTTTTTGGAACTTGGGAATGGTTATCAAGAGGCAATTGAGGATATTACCAAAAGAATGGGTGCAGGAATGGCAAAATTTATCTTGAAGGAGGTAGAAACCATTGATGACTATGATGAATACTGCCACTATGTGGCAGGACTTGTTGGTTTAGGTTTGTCCAAGCTCTTCCATGCTGCTGGAAAGGAAGATTTGGCCTCAGACTCTCTCTCAAATTCAATGGGCTTATTTCTTCAGAAAACAAACATCATTCGGGATTATTTGGAGGATATTAATGAGATACCAAAGTCACGCATGTTTTGGCCACGTCAAATCTGGAGTAAATATGTCAATAAACTTGAGGACTTGAAATATGAGGAAAACTCAGAGAAGGCAGTGCAATGCTTGAACGACATGGTAACTAATGCTTTGATACATATGGAAGATTGCTTGAAGTACATGGCTGCATTGAGAGATCCTGCTATATTCAAATTTTGTGCCATCCCTCAGATCATGGCAATTGGCACCCTAGCATTGTGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTCAAAATGAGGCGAGGTCTTACAGCAAAAGTTATTGACCGAACAAAATCAATTGATGATGTCTATGGTGCTTTCTTTGATTTTGCTTCCGTTATAAAGTCCAAGGTTGACAAGAATGATCTTCATGCAACAAAAACATTGAGCAGAGTGGAAGCGGTACAGAAATTATGTAGAGACTCTGGAGCTCTGAGCAAAAGATTGTGGCGTTGTTTATTATATTGGCGATCATTTACGCTTATCTCTCTGCTAGCCCAAGAATCTAATGGTTTGCATTTCTTATATATTCTTCAACATAAATGGCTGGTTACAAAAGTACATGCCTCGTTGACTACATTAGTTTCTTGTATTTGTATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

430

Amino Acids

49.12

Weight (kDa)

6.73

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	44 - 315	2.7e-54	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34640 AT4G34640 AT4G34650
fragaria_vesca	FvH4_2g10131
malus_domestica	MD05G1056800.v1.1 MD10G1064900.v1.1
prunus_persica	Prupe.8G087000_v2.0.a1 Prupe.8G087000_v2.0.a1
pyrus_communis	pycom05g04830
rosa_chinensis	RchiOBHm_Chr6g0267271
rosa_laevigata	RLG00000014018
rosa_multiflora	Rmu_ssc0000388.1_g000056
rosa_roxburghii	Rroxscaffold_7G00200960
rosa_rugosa	Rorug06G0030800 Rorug06G0030900 Rorug06G0031000
rosa_samantha	Rh6BG152800
rosa_wichuraiana	Rw6G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1025
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	5, 884
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	3 cut(s)	47, 187, 1085
AclWI	GGATC	3 cut(s)	85, 302, 830
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	458, 595, 851
AcuI	CTGAAG	3 cut(s)	74, 599, 904
AcyI	GRCGYC	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	4 cut(s)	334, 818, 1089, 1245
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	9 cut(s)	167, 378, 469, 600, 730, 769, 814, 850, 1220
AjiI	CACGTC	1 cut(s)	689
AluBI	AGCT	6 cut(s)	58, 172, 184, 224, 547, 1115
AluI	AGCT	6 cut(s)	58, 172, 184, 224, 547, 1115
Alw21I	GWGCWC	3 cut(s)	186, 226, 1117
Alw26I	GTCTC	2 cut(s)	145, 1098
AlwI	GGATC	3 cut(s)	85, 302, 830
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	576, 683
ApeKI	GCWGC	2 cut(s)	557, 824
ApoI	RAATTY	3 cut(s)	458, 595, 851
AseI	ATTAAT	1 cut(s)	654
AsuNHI	GCTAGC	1 cut(s)	1177
AvaI	CYCGRG	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	653, 686
BalI	TGGCCA	1 cut(s)	685
BanI	GGYRCC	2 cut(s)	5, 884
BanII	GRGCYC	4 cut(s)	105, 186, 226, 1117
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	3 cut(s)	186, 226, 1117
BbvI	GCAGC	2 cut(s)	544, 811
BccI	CCATC	2 cut(s)	375, 869
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	145, 1098
BfaI	CTAG	3 cut(s)	227, 890, 1178
BisI	GCNGC	2 cut(s)	558, 825
BlsI	GCNGC	2 cut(s)	559, 826
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	7, 886
BmsI	GCATC	1 cut(s)	77
BmtI	GCTAGC	1 cut(s)	1181
BpiI	GAAGAC	1 cut(s)	910
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	3 cut(s)	116, 718, 1131
BpuEI	CTTGAG	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	252, 767
BseDI	CCNNGG	1 cut(s)	1032
BseGI	GGATG	2 cut(s)	247, 861
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	2 cut(s)	252, 767
BseMII	CTCAG	4 cut(s)	594, 759, 881, 1109
BseXI	GCAGC	2 cut(s)	544, 811
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	578, 685
BshNI	GGYRCC	2 cut(s)	5, 884
BsiHKAI	GWGCWC	3 cut(s)	186, 226, 1117
BsiHKCI	CYCGRG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	145, 1098
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	578, 685
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	4 cut(s)	105, 186, 226, 1117
Bsp143I	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
BspACI	CCGC	3 cut(s)	47, 187, 1085
BspANI	GGCC	2 cut(s)	578, 685
BspCNI	CTCAG	4 cut(s)	593, 758, 880, 1110
BspLI	GGNNCC	2 cut(s)	7, 886
BspOI	GCTAGC	1 cut(s)	1181
BspPI	GGATC	3 cut(s)	85, 302, 830
BspQI	GCTCTTC	1 cut(s)	554
BspT107I	GGYRCC	2 cut(s)	5, 884
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	252, 767
BssECI	CCNNGG	1 cut(s)	1032
BssMI	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	1032
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	1179
BstDEI	CTNAG	5 cut(s)	218, 580, 745, 867, 1118
BstF5I	GGATG	2 cut(s)	247, 861
BstKTI	GATC	7 cut(s)	24, 93, 310, 838, 873, 1051, 1157
BstMAI	GTCTC	2 cut(s)	145, 1098
BstMBI	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 452
BstNSI	RCATGY	4 cut(s)	80, 330, 679, 1250
BstV1I	GCAGC	2 cut(s)	544, 811
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	2 cut(s)	90, 835
BstXI	CCANNNNNNTGG	2 cut(s)	439, 560
BstYI	RGATCY	2 cut(s)	90, 835
BsuRI	GGCC	2 cut(s)	578, 685
BtrI	CACGTC	1 cut(s)	689
BtsCI	GGATG	2 cut(s)	247, 861
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	2 cut(s)	231, 762
Cac8I	GCNNGC	1 cut(s)	1179
Csp6I	GTAC	4 cut(s)	333, 817, 1088, 1244
CviQI	GTAC	4 cut(s)	333, 817, 1088, 1244
DdeI	CTNAG	5 cut(s)	218, 580, 745, 867, 1118
DpnI	GATC	7 cut(s)	23, 92, 309, 837, 872, 1050, 1156
DpnII	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
DraIII	CACNNNGTG	1 cut(s)	514
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Ecl136II	GAGCTC	3 cut(s)	184, 224, 1115
Eco130I	CCWWGG	1 cut(s)	1032
Eco24I	GRGCYC	4 cut(s)	105, 186, 226, 1117
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	3 cut(s)	184, 224, 1115
Eco57I	CTGAAG	3 cut(s)	74, 599, 904
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	3 cut(s)	184, 224, 1115
EcoT14I	CCWWGG	1 cut(s)	1032
EcoT38I	GRGCYC	4 cut(s)	105, 186, 226, 1117
ErhI	CCWWGG	1 cut(s)	1032
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	798
FbaI	TGATCA	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	558, 825
FokI	GGATG	2 cut(s)	254, 848
FriOI	GRGCYC	4 cut(s)	105, 186, 226, 1117
Fsp4HI	GCNGC	2 cut(s)	558, 825
FspBI	CTAG	3 cut(s)	227, 890, 1178
GluI	GCNGC	2 cut(s)	558, 825
GsuI	CTGGAG	3 cut(s)	116, 718, 1131
HaeIII	GGCC	2 cut(s)	578, 685
Hin1I	GRCGYC	1 cut(s)	264
HincII	GTYRAC	3 cut(s)	15, 1039, 1257
HindII	GTYRAC	3 cut(s)	15, 1039, 1257
HinfI	GANTC	3 cut(s)	584, 1106, 1187
Hpy166II	GTNNAC	3 cut(s)	15, 1039, 1257
Hpy188I	TCNGA	8 cut(s)	54, 100, 583, 618, 748, 870, 923, 1119
Hpy188III	TCNNGA	9 cut(s)	82, 133, 227, 311, 410, 466, 635, 697, 1110
Hpy8I	GTNNAC	3 cut(s)	15, 1039, 1257
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	130, 463, 745
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	264, 688
HpyCH4V	TGCA	9 cut(s)	68, 257, 326, 446, 760, 827, 1058, 1201, 1285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 452
HpyF3I	CTNAG	5 cut(s)	218, 580, 745, 867, 1118
HpySE526I	ACGT	2 cut(s)	264, 688
Hsp92I	GRCGYC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
LguI	GCTCTTC	1 cut(s)	554
LmnI	GCTCC	3 cut(s)	135, 189, 1112
LpnPI	CCDG	9 cut(s)	146, 197, 432, 504, 546, 682, 852, 1095, 1217
Lsp1109I	GCAGC	2 cut(s)	544, 811
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	3 cut(s)	227, 890, 1178
MaeII	ACGT	2 cut(s)	264, 688
MaeIII	GTNAC	3 cut(s)	669, 778, 1234
MalI	GATC	7 cut(s)	23, 92, 309, 837, 872, 1050, 1156
MboI	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
MboII	GAAGA	7 cut(s)	541, 581, 605, 815, 910, 1043, 1208
MfeI	CAATTG	3 cut(s)	417, 879, 981
MflI	RGATCY	2 cut(s)	90, 835
MhlI	GDGCHC	4 cut(s)	105, 186, 226, 1117
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	8 cut(s)	63, 417, 458, 595, 851, 879, 981, 1094
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	2 cut(s)	578, 1100
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	685
MunI	CAATTG	3 cut(s)	417, 879, 981
MwoI	GCNNNNNNNGC	2 cut(s)	55, 452
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
NheI	GCTAGC	1 cut(s)	1177
NlaIV	GGNNCC	2 cut(s)	7, 886
NmuCI	GTSAC	1 cut(s)	669
NspI	RCATGY	4 cut(s)	80, 330, 679, 1250
PciSI	GCTCTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	1187
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	559, 826
PleI	GAGTC	2 cut(s)	578, 1100
PpsI	GAGTC	2 cut(s)	578, 1100
PshBI	ATTAAT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	1025
Psp124BI	GAGCTC	3 cut(s)	186, 226, 1117
PspN4I	GGNNCC	2 cut(s)	7, 886
PsuI	RGATCY	2 cut(s)	90, 835
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	4 cut(s)	334, 818, 1089, 1245
RsaNI	GTAC	4 cut(s)	333, 817, 1088, 1244
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	3 cut(s)	186, 226, 1117
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	2 cut(s)	558, 825
Sau3AI	GATC	7 cut(s)	21, 90, 307, 835, 870, 1048, 1154
SchI	GAGTC	2 cut(s)	578, 1100
SduI	GDGCHC	4 cut(s)	105, 186, 226, 1117
SfaNI	GCATC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	8 cut(s)	63, 417, 458, 595, 851, 879, 981, 1094
SsiI	CCGC	3 cut(s)	47, 187, 1085
SspMI	CTAG	3 cut(s)	227, 890, 1178
SstI	GAGCTC	3 cut(s)	186, 226, 1117
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	267, 691
TaqI	TCGA	5 cut(s)	14, 71, 81, 174, 237
TaqII	GACCGA	1 cut(s)	984
TasI	AATT	8 cut(s)	63, 417, 458, 595, 851, 879, 981, 1094
TatI	WGTACW	2 cut(s)	816, 1243
TfiI	GAWTC	1 cut(s)	1187
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	2 cut(s)	238, 762
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	2 cut(s)	557, 824
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	3 cut(s)	281, 513, 1043
TspGWI	ACGGA	1 cut(s)	1009
TspRI	CASTG	2 cut(s)	238, 762
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	3 cut(s)	458, 595, 851
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	4 cut(s)	80, 330, 679, 1250
XcmI	CCANNNNNNNNNTGG	2 cut(s)	693, 1190
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	3 cut(s)	227, 890, 1178
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.