AT4G35890

La domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008525
Physical Location & Seq
Forward (+)
16997091 .. 17000896
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35890.2

Sequence Viewer

Length: 1572 bp
ATGGCTTCCGCCACTTCCAATAACCCTGCTTCTTCTTCTATGTCTCCTCGTCGTATCAGCGGGAATCACGGCAGCCCCACCGCTTCCGTAGCACAATCACCTCGCCGTCCTTCTCGGCAGGTTTCTTCTCCGTGGACTCAAATCGTCCGCGGCGAATCAGAGCCGATCGCCGCCGCCGCCGCTGTAGCCGGTCCTTCCTCTCCTCAATCCAGGGCTCCGATCGAGCCGATTGCTTCTGTATCCGTTGCTGCTCCAACTGCTGCTGTTTTGACGGTGGAGGCGGCGGCTGGTGATGAGAAATCGGAAGCATCTGGTGGTCAGGACAATGCTGGAAAGAAACCAGTTTGGAAAAGGCCGTCTAATGGGGCTTCTGAGGTTGGACCTGTCATGGGAGCTTCTTCGTGGCCTGCTCTTTCTGAGACCACCAAAGCTCCTTCCAACAAGTCTTCTTCTGATTCGTTAAAAAGTCTCGGTGATGTACCATCATCATCGTCAGCATCATCATCTGTCCCCGTTACTCAGGGAATTGCAAATGCTTCTGTTCCTGCACCAAAGCAAGCTGGCCGTGCAAACCCTAATCCAACTCCAAATCACTCGCGCCAGAGATCATTTAAACAACGCAATGGCGCCTCTGGATCAGCTAATGGTACTGTTTCTCAACCATCAGCGCAGGGTTCATTTACCGAATTGCCTTCGCACAACCCTTCTCCTAGAGGCCAAAACCAGAAGAATGGCTTTGCGTCACAAAACCATGGTGGTACTGAAAACCCATCTCAACGAGACTCCTACAGGAACCAAAACGGTAATCATCACCAAAGTCACGGTGGCAGGCGCAATCAGGAGCACGGGAATCAAAATTGGACTTTTCAAAGAAGTTTTAACGGGAGAGAAGGAAATGCGCAATCGCAAAGAGGTACTCCAGCTTTTGTAAGACATCCATCACCAACTGTGCAGCCAATTCCTCAGTTTATGGCAGCTCAGCCTTTTCCCAGTCATATACCCTTCCCTACTGAATTGGCACAGTCGTCGTATTATCCCCGTATGCCTTACATGACACCTATTCCGCATGGTCCGCAGTTCTTCTACCATTATCAAGATCCTCCGTTACACATGAAACTGCATAAGCAAATACAATATTATTTTAGTGATGAAAATTTGATTACAGACATATACCTTCGAGGGTTCATGAATAATGAGGGTTTTGTTCCGCTACGTGTGGTAGCTGGTTTCAAAAAGGTTGCAGAACTTACAGATAATATCCAGCAGATAGTGGAGGCTCTTCAAAATTCACCTCATGTTGAAGTGCAGGGTGACTTCATAAGGAAGCGCGATAATTGGCAAAATTGGGTGCTAAGGAGGAACCCTACAGGTTCCGGCCCCCAATCTGTTGATAGGGCAGATGCAGTGGCAAAACGACTTGGAAACTTGTCAGTTGATCAGAGTTCGGCTGATCCCATTGGTGGTTCGAGCAGTCAGTTGCAACCTACAGAAGCTCTTTCAGATGATCAGCAACAGTCTTCTAGTACTGCTCCAGTGAGCAACCACAACGCCCCAGATGGTGCAAACCGTTGA

Protein Analysis

523

Amino Acids

55.84

Weight (kDa)

9.74

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 374 - 413 8.3e-16 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 626
AccII CGCG 3 cut(s) 150, 598, 1329
AclWI GGATC 3 cut(s) 643, 1091, 1445
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 2 cut(s) 1153, 1285
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 5 cut(s) 480, 649, 760, 916, 1525
AfiI CCNNNNNNNGG 3 cut(s) 362, 389, 1460
AflIII ACRYGT 1 cut(s) 1213
AgsI TTSAA 4 cut(s) 869, 1231, 1283, 1301
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 8 cut(s) 395, 431, 560, 641, 923, 977, 1223, 1493
AluI AGCT 8 cut(s) 395, 431, 560, 641, 923, 977, 1223, 1493
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 4 cut(s) 48, 413, 473, 774
AlwI GGATC 3 cut(s) 643, 1091, 1445
AoxI GGCC 5 cut(s) 353, 404, 562, 715, 1375
ApeKI GCWGC 5 cut(s) 72, 248, 260, 952, 974
ApoI RAATTY 2 cut(s) 1153, 1285
AspLEI GCGC 6 cut(s) 600, 629, 670, 834, 901, 1329
AspS9I GGNCC 4 cut(s) 191, 380, 1070, 1376
AsuHPI GGTGA 7 cut(s) 90, 302, 485, 803, 933, 1281, 1322
AvaII GGWCC 3 cut(s) 191, 380, 1070
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 438, 1509
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 5 cut(s) 84, 235, 247, 964, 986
BccI CCATC 5 cut(s) 490, 670, 778, 946, 1550
BceAI ACGGC 4 cut(s) 85, 90, 340, 549
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 1008, 1042
BciT130I CCWGG 1 cut(s) 211
BciVI GTATCC 1 cut(s) 250
BclI TGATCA 2 cut(s) 1435, 1504
BcoDI GTCTC 4 cut(s) 48, 413, 473, 774
BfaI CTAG 2 cut(s) 711, 1521
BfmI CTRYAG 4 cut(s) 183, 787, 1365, 1485
BfoI RGCGCY 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 250
BlpI GCTNAGC 1 cut(s) 978
BmcAI AGTACT 1 cut(s) 1525
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 3 cut(s) 191, 380, 1070
BmgT120I GGNCC 4 cut(s) 191, 380, 1070, 1376
BmiI GGNNCC 6 cut(s) 216, 628, 794, 1361, 1372, 1378
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 3 cut(s) 317, 506, 1390
BmuI ACTGGG 1 cut(s) 984
BpiI GAAGAC 2 cut(s) 438, 1509
BpmI CTGGAG 2 cut(s) 903, 1515
Bpu10I CCTNAGC 1 cut(s) 1352
Bpu1102I GCTNAGC 1 cut(s) 978
BsaAI YACGTR 1 cut(s) 1214
BsaHI GRCGYC 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 4 cut(s) 131, 148, 210, 751
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 389, 1460
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 341, 990, 1532
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 4 cut(s) 131, 148, 210, 751
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 3 cut(s) 362, 389, 1460
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 5 cut(s) 363, 408, 533, 977, 992
BseNI ACTGG 3 cut(s) 341, 990, 1532
BseRI GAGGAG 2 cut(s) 36, 192
BseXI GCAGC 5 cut(s) 84, 235, 247, 964, 986
BsgI GTGCAG 3 cut(s) 531, 971, 1325
Bsh1236I CGCG 3 cut(s) 150, 598, 1329
Bsh1285I CGRYCG 2 cut(s) 168, 222
BshFI GGCC 5 cut(s) 355, 406, 564, 717, 1377
BshNI GGYRCC 1 cut(s) 626
BsiEI CGRYCG 2 cut(s) 168, 222
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 2 cut(s) 189, 1374
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 362, 389, 1460
BsmAI GTCTC 4 cut(s) 48, 413, 473, 774
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 5 cut(s) 355, 406, 564, 717, 1377
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 217, 846
Bsp143I GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
Bsp1720I GCTNAGC 1 cut(s) 978
Bsp19I CCATGG 1 cut(s) 751
BspANI GGCC 5 cut(s) 355, 406, 564, 717, 1377
BspCNI CTCAG 5 cut(s) 364, 409, 532, 976, 991
BspFNI CGCG 3 cut(s) 150, 598, 1329
BspHI TCATGA 1 cut(s) 1185
BspLI GGNNCC 6 cut(s) 216, 628, 794, 1361, 1372, 1378
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 643, 1091, 1445
BspQI GCTCTTC 1 cut(s) 1284
BspT107I GGYRCC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 3 cut(s) 341, 990, 1532
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 131, 148, 210, 751
BssMI GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 8 cut(s) 274, 652, 803, 824, 949, 1023, 1515, 1568
Bst6I CTCTTC 1 cut(s) 1284
BstACI GRCGYC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 1214
BstC8I GCNNGC 4 cut(s) 408, 558, 562, 830
BstDEI CTNAG 6 cut(s) 372, 417, 519, 963, 978, 1352
BstDSI CCRYGG 3 cut(s) 131, 148, 751
BstF5I GGATG 1 cut(s) 934
BstFNI CGCG 3 cut(s) 150, 598, 1329
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 6 cut(s) 600, 629, 670, 834, 901, 1329
BstKTI GATC 8 cut(s) 168, 222, 608, 638, 1099, 1438, 1453, 1507
BstMAI GTCTC 4 cut(s) 48, 413, 473, 774
BstMBI GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
BstMCI CGRYCG 2 cut(s) 168, 222
BstMWI GCNNNNNNNGC 7 cut(s) 89, 176, 179, 185, 257, 566, 1072
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 4 cut(s) 183, 787, 1365, 1485
BstUI CGCG 3 cut(s) 150, 598, 1329
BstV1I GCAGC 5 cut(s) 84, 235, 247, 964, 986
BstV2I GAAGAC 2 cut(s) 438, 1509
BstX2I RGATCY 1 cut(s) 1096
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 1096
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 5 cut(s) 355, 406, 564, 717, 1377
BtgI CCRYGG 3 cut(s) 131, 148, 751
BtsCI GGATG 1 cut(s) 934
BtsI GCAGTG 1 cut(s) 1410
BtsIMutI CAGTG 2 cut(s) 1410, 1539
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 4 cut(s) 408, 558, 562, 830
CciI TCATGA 1 cut(s) 1185
CfoI GCGC 6 cut(s) 600, 629, 670, 834, 901, 1329
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 4 cut(s) 191, 380, 1070, 1376
Cfr42I CCGCGG 1 cut(s) 151
CseI GACGC 1 cut(s) 729
Csp6I GTAC 5 cut(s) 479, 648, 759, 915, 1524
CviAII CATG 7 cut(s) 388, 752, 1051, 1067, 1111, 1186, 1295
CviQI GTAC 5 cut(s) 479, 648, 759, 915, 1524
DdeI CTNAG 6 cut(s) 372, 417, 519, 963, 978, 1352
DinI GGCGCC 1 cut(s) 628
DpnI GATC 8 cut(s) 167, 221, 607, 637, 1098, 1437, 1452, 1506
DpnII GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
DraI TTTAAA 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 1284
EarI CTCTTC 1 cut(s) 1284
Eco130I CCWWGG 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 3 cut(s) 191, 380, 1070
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 628
EheI GGCGCC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 7 cut(s) 391, 755, 1054, 1070, 1114, 1189, 1298
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 494
FatI CATG 7 cut(s) 387, 751, 1050, 1066, 1110, 1185, 1294
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 2 cut(s) 1435, 1504
FokI GGATG 1 cut(s) 921
FriOI GRGCYC 1 cut(s) 217
FspBI CTAG 2 cut(s) 711, 1521
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 6 cut(s) 599, 628, 669, 833, 900, 1328
GsuI CTGGAG 2 cut(s) 903, 1515
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 5 cut(s) 355, 406, 564, 717, 1377
HapII CCGG 2 cut(s) 189, 1374
HgaI GACGC 1 cut(s) 729
HhaI GCGC 6 cut(s) 600, 629, 670, 834, 901, 1329
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 7 cut(s) 391, 755, 1054, 1070, 1114, 1189, 1298
Hin6I GCGC 6 cut(s) 598, 627, 668, 832, 899, 1327
HinP1I GCGC 6 cut(s) 598, 627, 668, 832, 899, 1327
HinfI GANTC 6 cut(s) 64, 136, 155, 455, 782, 850
HpaII CCGG 2 cut(s) 189, 1374
HphI GGTGA 7 cut(s) 90, 302, 485, 803, 933, 1281, 1322
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 8 cut(s) 160, 219, 304, 373, 418, 454, 1440, 1501
Hpy188III TCNNGA 5 cut(s) 320, 633, 839, 1094, 1186
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 2 cut(s) 54, 1030
HpyAV CCTTC 8 cut(s) 120, 204, 444, 702, 714, 884, 1012, 1184
HpyCH4III ACNGT 8 cut(s) 274, 652, 803, 824, 949, 1023, 1515, 1568
HpyCH4IV ACGT 1 cut(s) 1213
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 176, 179, 185, 257, 566, 1072
HpyF3I CTNAG 6 cut(s) 372, 417, 519, 963, 978, 1352
HpySE526I ACGT 1 cut(s) 1213
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 7 cut(s) 391, 755, 1054, 1070, 1114, 1189, 1298
HspAI GCGC 6 cut(s) 598, 627, 668, 832, 899, 1327
KasI GGCGCC 1 cut(s) 626
Ksp22I TGATCA 2 cut(s) 1435, 1504
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
LguI GCTCTTC 1 cut(s) 1284
LmnI GCTCC 6 cut(s) 220, 256, 392, 436, 841, 1534
Lsp1109I GCAGC 5 cut(s) 84, 235, 247, 964, 986
LweI GCATC 3 cut(s) 317, 506, 1390
MaeI CTAG 2 cut(s) 711, 1521
MaeII ACGT 1 cut(s) 1213
MaeIII GTNAC 5 cut(s) 514, 741, 818, 1104, 1310
MalI GATC 8 cut(s) 167, 221, 607, 637, 1098, 1437, 1452, 1506
MboI GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 2 cut(s) 217, 846
MluCI AATT 9 cut(s) 525, 686, 856, 957, 1013, 1153, 1285, 1333, 1342
Mly113I GGCGCC 1 cut(s) 627
MlyI GAGTC 2 cut(s) 130, 776
MmeI TCCRAC 4 cut(s) 278, 358, 462, 605
MseI TTAA 3 cut(s) 461, 612, 879
MspA1I CMGCKG 3 cut(s) 60, 150, 182
MspI CCGG 2 cut(s) 189, 1374
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 3 cut(s) 150, 598, 1329
MwoI GCNNNNNNNGC 7 cut(s) 89, 176, 179, 185, 257, 566, 1072
NarI GGCGCC 1 cut(s) 627
NcoI CCATGG 1 cut(s) 751
NdeII GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
NlaIII CATG 7 cut(s) 391, 755, 1054, 1070, 1114, 1189, 1298
NlaIV GGNNCC 6 cut(s) 216, 628, 794, 1361, 1372, 1378
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 3 cut(s) 741, 818, 1310
NsbI TGCGCA 1 cut(s) 900
PagI TCATGA 1 cut(s) 1185
PciSI GCTCTTC 1 cut(s) 1284
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 4 cut(s) 64, 155, 455, 850
Ple19I CGATCG 2 cut(s) 168, 222
PleI GAGTC 2 cut(s) 130, 776
PluTI GGCGCC 1 cut(s) 630
PpsI GAGTC 2 cut(s) 130, 776
Ppu21I YACGTR 1 cut(s) 1214
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 6 cut(s) 216, 628, 794, 1361, 1372, 1378
PspPI GGNCC 4 cut(s) 191, 380, 1070, 1376
PsuI RGATCY 1 cut(s) 1096
PvuI CGATCG 2 cut(s) 168, 222
RsaI GTAC 5 cut(s) 480, 649, 760, 916, 1525
RsaNI GTAC 5 cut(s) 479, 648, 759, 915, 1524
SacII CCGCGG 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 1284
SaqAI TTAA 3 cut(s) 461, 612, 879
Sau3AI GATC 8 cut(s) 165, 219, 605, 635, 1096, 1435, 1450, 1504
Sau96I GGNCC 4 cut(s) 191, 380, 1070, 1376
ScaI AGTACT 1 cut(s) 1525
SchI GAGTC 2 cut(s) 130, 776
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 217, 846
SfaNI GCATC 3 cut(s) 317, 506, 1390
SfcI CTRYAG 4 cut(s) 183, 787, 1365, 1485
SfoI GGCGCC 1 cut(s) 628
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
SinI GGWCC 3 cut(s) 191, 380, 1070
Sse9I AATT 9 cut(s) 525, 686, 856, 957, 1013, 1153, 1285, 1333, 1342
SspDI GGCGCC 1 cut(s) 626
SspI AATATT 1 cut(s) 1136
SspMI CTAG 2 cut(s) 711, 1521
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 8 cut(s) 274, 652, 803, 824, 949, 1023, 1515, 1568
TaiI ACGT 1 cut(s) 1216
TaqI TCGA 3 cut(s) 222, 1177, 1466
TasI AATT 9 cut(s) 525, 686, 856, 957, 1013, 1153, 1285, 1333, 1342
TatI WGTACW 1 cut(s) 1523
TauI GCSGC 7 cut(s) 153, 173, 176, 179, 182, 284, 287
TfiI GAWTC 4 cut(s) 64, 155, 455, 850
Tru1I TTAA 3 cut(s) 461, 612, 879
Tru9I TTAA 3 cut(s) 461, 612, 879
TscAI CASTG 2 cut(s) 1410, 1539
TseFI GTSAC 3 cut(s) 741, 818, 1310
TseI GCWGC 5 cut(s) 72, 248, 260, 952, 974
Tsp45I GTSAC 3 cut(s) 741, 818, 1310
TspDTI ATGAA 6 cut(s) 666, 1127, 1164, 1174, 1202, 1306
TspGWI ACGGA 4 cut(s) 76, 120, 232, 1092
TspRI CASTG 2 cut(s) 1410, 1539
VpaK11BI GGWCC 3 cut(s) 191, 380, 1070
XapI RAATTY 2 cut(s) 1153, 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 821
XspI CTAG 2 cut(s) 711, 1521
ZrmI AGTACT 1 cut(s) 1525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.