Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008525

Physical Location & Seq

Genomic Coordinates Reverse (-)

5883148 .. 5884903

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0074100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCCGGCCGGCGAGCTCCGGCAGTCAGAGTCCTCGGAGGCCGAGGCCGAGCAGTGGCTGTGGGCCCAGATCAAAGCGGAGGCGCGGCGTGACGCCGAGTCGGAGCCGGCTCTGGCCAGCTATCTCTACTCGACCATCCTCTCGCACTCGTCGCTGGAGCGATCGCTGTCGTTTCACCTCGGCAACAAGCTCTGCTCCTCCACGCTCCTCTCCACCCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCCGACTCATCCCTACGCGCCGCCGCCGTCGCCGATTTACGCGCCGTGCACGAGCGTGACCCCGCCTGCGTGTCCTTCTCTCACTGCTTGCTCAATTACAAGGGCTTCCTGGCGTGTCAGGCTCATCGTGTGGCACATAAGCTATGGATTCAGTCACGCAGGCCACTGGCGCTTGCGCTCCACTCGCGGATAGCTGACGTGTTCGCGGTGGATATTCACCCCGCGGCGAGGATCGGAAAAGGAGTGCTGTTCGACCACGCGACGGGAGTGGTGGTCGGGGAGACGGCGGTGATTGGAAACAACGTCTCCATACTCCACCACGTGACGCTTGGAGGGACAGGAAAGGCCGGAGGAGACAGGCATCCGAAGATCGGCGACGGGGTACTTATCGGAGCCGGTGCAACGATATTGGGGAATGTGAAGATTGGAGAGGGTGCGAAGATTGGGGCTGGGTCGGTGGTGCTTATTGACGTGCCGGCGAGGACTACGGCGGTGGGGAATCCTGCGAGGTTGGTTGGCGGGAAGGAGAAGCCGTCGAAGCATGAGGATGTGCCTGGAGAATCCATGGACCATACTTCGTTTATATCGGAGTGGTCTGACTATATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010150 GO:0014070 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

286

Amino Acids

30.47

Weight (kDa)

6.53

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	20 - 124	1e-36	Serine acetyltransferase, N-terminal
Hexapep	PF00132	204 - 237	1.3e-11	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35890 AT4G35890 AT5G66100 AT5G66100
fragaria_vesca	FvH4_1g11260 FvH4_1g11260 FvH4_1g11260
malus_domestica	MD02G1125000.v1.1 MD15G1240700.v1.1
prunus_persica	Prupe.7G173400_v2.0.a1
pyrus_communis	pycom02g09760 pycom15g21230
rosa_chinensis	RchiOBHm_Chr2g0098711
rosa_laevigata	RLG00000016823
rosa_multiflora	Rmu_sc0002776.1_g000023
rosa_roxburghii	Rroxscaffold_2G00143790
rosa_rugosa	Rorug02G0074000 Rorug02G0074100
rosa_samantha	Rh2AG122000 Rh2BG125500 Rh2CG126600 Rh2DG127600
rosa_wichuraiana	Rw0G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	2 cut(s)	6, 114
AcvI	CACGTG	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	4 cut(s)	54, 477, 511, 620
AflIII	ACRYGT	1 cut(s)	447
AhdI	GACNNNNNGTC	1 cut(s)	97
AjiI	CACGTC	2 cut(s)	448, 721
AjnI	CCWGG	2 cut(s)	357, 802
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	16, 120, 190, 391, 443
AluI	AGCT	5 cut(s)	16, 120, 190, 391, 443
Alw21I	GWGCWC	2 cut(s)	18, 300
Alw26I	GTCTC	3 cut(s)	524, 559, 597
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	488
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	7 cut(s)	6, 39, 45, 63, 114, 410, 594
ApaI	GGGCCC	1 cut(s)	67
ApaLI	GTGCAC	1 cut(s)	296
AsiSI	GCGATCGC	1 cut(s)	164
AspLEI	GCGC	5 cut(s)	85, 269, 293, 421, 427
AspS9I	GGNCC	3 cut(s)	63, 64, 817
AsuHPI	GGTGA	3 cut(s)	167, 458, 550
AvaII	GGWCC	1 cut(s)	817
BaeGI	GKGCMC	2 cut(s)	67, 300
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	18, 67
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	18, 300
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	5 cut(s)	260, 278, 549, 753, 766
BciT130I	CCWGG	2 cut(s)	359, 804
BcoDI	GTCTC	3 cut(s)	524, 559, 597
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	4 cut(s)	86, 270, 273, 474
BlsI	GCNGC	4 cut(s)	87, 271, 274, 475
Bme1390I	CCNGG	2 cut(s)	359, 804
Bme18I	GGWCC	1 cut(s)	817
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgBI	CACGTC	2 cut(s)	448, 721
BmgT120I	GGNCC	3 cut(s)	63, 64, 817
BmiI	GGNNCC	3 cut(s)	65, 105, 643
BmrFI	CCNGG	2 cut(s)	359, 804
BmsI	GCATC	1 cut(s)	619
BpmI	CTGGAG	2 cut(s)	176, 825
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	5 cut(s)	33, 42, 178, 471, 813
BsaXI	ACNNNNNCTCC	8 cut(s)	230, 260, 507, 537, 539, 569, 767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 477, 511, 620
Bse118I	RCCGGY	5 cut(s)	4, 8, 106, 644, 724
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	359, 804
BseDI	CCNNGG	5 cut(s)	33, 42, 178, 471, 813
BseGI	GGATG	4 cut(s)	135, 257, 610, 802
BseLI	CCNNNNNNNGG	4 cut(s)	54, 477, 511, 620
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	5 cut(s)	187, 197, 209, 238, 615
BseSI	GKGCMC	2 cut(s)	67, 300
BseX3I	CGGCCG	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	698
Bsh1236I	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
Bsh1285I	CGRYCG	2 cut(s)	9, 164
BshFI	GGCC	7 cut(s)	8, 41, 47, 65, 116, 412, 596
BsiEI	CGRYCG	2 cut(s)	9, 164
BsiHKAI	GWGCWC	2 cut(s)	18, 300
BsiSI	CCGG	7 cut(s)	5, 9, 19, 107, 597, 645, 725
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	4 cut(s)	54, 477, 511, 620
BsmAI	GTCTC	3 cut(s)	524, 559, 597
BsmBI	CGTCTC	2 cut(s)	524, 559
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	7 cut(s)	8, 41, 47, 65, 116, 412, 596
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	18, 67, 300
Bsp143I	GATC	4 cut(s)	69, 161, 480, 618
Bsp19I	CCATGG	1 cut(s)	813
BspANI	GGCC	7 cut(s)	8, 41, 47, 65, 116, 412, 596
BspFNI	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
BspLI	GGNNCC	3 cut(s)	65, 105, 643
BspPI	GGATC	1 cut(s)	488
BsrFI	RCCGGY	5 cut(s)	4, 8, 106, 644, 724
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	5 cut(s)	4, 8, 106, 644, 724
BssECI	CCNNGG	5 cut(s)	33, 42, 178, 471, 813
BssMI	GATC	4 cut(s)	69, 161, 480, 618
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	359, 804
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	571
BstDSI	CCRYGG	2 cut(s)	471, 813
BstF5I	GGATG	4 cut(s)	135, 257, 610, 802
BstFNI	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	5 cut(s)	85, 269, 293, 421, 427
BstKTI	GATC	4 cut(s)	72, 164, 483, 621
BstMAI	GTCTC	3 cut(s)	524, 559, 597
BstMBI	GATC	4 cut(s)	69, 161, 480, 618
BstMCI	CGRYCG	2 cut(s)	9, 164
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 278, 368, 418, 433, 787
BstNI	CCWGG	2 cut(s)	359, 804
BstSCI	CCNGG	2 cut(s)	357, 802
BstSLI	GKGCMC	2 cut(s)	67, 300
BstUI	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	7 cut(s)	8, 41, 47, 65, 116, 412, 596
BtgI	CCRYGG	2 cut(s)	471, 813
BtrI	CACGTC	2 cut(s)	448, 721
BtsCI	GGATG	4 cut(s)	135, 257, 610, 802
BtsI	GCAGTG	2 cut(s)	59, 331
BtsIMutI	CAGTG	3 cut(s)	59, 331, 413
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	5 cut(s)	85, 269, 293, 421, 427
Cfr10I	RCCGGY	5 cut(s)	4, 8, 106, 644, 724
Cfr13I	GGNCC	3 cut(s)	63, 64, 817
Cfr42I	CCGCGG	1 cut(s)	474
CseI	GACGC	2 cut(s)	101, 583
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	2 cut(s)	791, 814
CviQI	GTAC	1 cut(s)	632
DpnI	GATC	4 cut(s)	71, 163, 482, 620
DpnII	GATC	4 cut(s)	69, 161, 480, 618
DraIII	CACNNNGTG	1 cut(s)	571
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	2 cut(s)	6, 114
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	236
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	2 cut(s)	18, 67
Eco47I	GGWCC	1 cut(s)	817
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	16
Eco72I	CACGTG	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	357, 802
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	2 cut(s)	18, 67
ErhI	CCWWGG	1 cut(s)	813
Esp3I	CGTCTC	2 cut(s)	524, 559
FaeI	CATG	2 cut(s)	794, 817
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	2 cut(s)	790, 813
FauI	CCCGC	3 cut(s)	319, 478, 761
Fnu4HI	GCNGC	4 cut(s)	86, 270, 273, 474
FokI	GGATG	4 cut(s)	122, 244, 597, 809
FriOI	GRGCYC	2 cut(s)	18, 67
Fsp4HI	GCNGC	4 cut(s)	86, 270, 273, 474
GlaI	GCGC	5 cut(s)	84, 268, 292, 420, 426
GluI	GCNGC	4 cut(s)	86, 270, 273, 474
GsaI	CCCAGC	1 cut(s)	702
GsuI	CTGGAG	2 cut(s)	176, 825
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	7 cut(s)	8, 41, 47, 65, 116, 412, 596
HapII	CCGG	7 cut(s)	5, 9, 19, 107, 597, 645, 725
HgaI	GACGC	2 cut(s)	101, 583
HhaI	GCGC	5 cut(s)	85, 269, 293, 421, 427
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	794, 817
Hin6I	GCGC	5 cut(s)	83, 267, 291, 419, 425
HinP1I	GCGC	5 cut(s)	83, 267, 291, 419, 425
HinfI	GANTC	6 cut(s)	29, 98, 254, 397, 748, 809
HpaII	CCGG	7 cut(s)	5, 9, 19, 107, 597, 645, 725
HphI	GGTGA	3 cut(s)	167, 458, 550
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	9 cut(s)	28, 37, 103, 253, 485, 615, 641, 838, 847
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	5 cut(s)	154, 281, 514, 629, 787
HpyAV	CCTTC	3 cut(s)	253, 334, 766
HpyCH4IV	ACGT	4 cut(s)	447, 552, 570, 720
HpyCH4V	TGCA	2 cut(s)	298, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 278, 368, 418, 433, 787
HpySE526I	ACGT	4 cut(s)	447, 552, 570, 720
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	794, 817
HspAI	GCGC	5 cut(s)	83, 267, 291, 419, 425
KroI	GCCGGC	4 cut(s)	4, 8, 106, 724
KroNI	GCCGGC	4 cut(s)	6, 10, 108, 726
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	69, 161, 480, 618
LmnI	GCTCC	7 cut(s)	21, 103, 157, 200, 210, 432, 641
LweI	GCATC	1 cut(s)	619
MaeII	ACGT	4 cut(s)	447, 552, 570, 720
MaeIII	GTNAC	4 cut(s)	89, 305, 402, 571
MalI	GATC	4 cut(s)	71, 163, 482, 620
MboI	GATC	4 cut(s)	69, 161, 480, 618
MboII	GAAGA	4 cut(s)	223, 628, 682, 700
MhlI	GDGCHC	3 cut(s)	18, 67, 300
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	38, 107, 248
MmeI	TCCRAC	2 cut(s)	81, 276
Mox20I	TGGCCA	1 cut(s)	116
MroNI	GCCGGC	4 cut(s)	4, 8, 106, 724
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	303, 795
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	7 cut(s)	5, 9, 19, 107, 597, 645, 725
MspR9I	CCNGG	2 cut(s)	359, 804
MvaI	CCWGG	2 cut(s)	359, 804
MvnI	CGCG	7 cut(s)	85, 267, 291, 436, 455, 473, 509
MwoI	GCNNNNNNNGC	6 cut(s)	151, 278, 368, 418, 433, 787
NaeI	GCCGGC	4 cut(s)	6, 10, 108, 726
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	4 cut(s)	69, 161, 480, 618
NgoMIV	GCCGGC	4 cut(s)	4, 8, 106, 724
NlaIII	CATG	2 cut(s)	794, 817
NlaIV	GGNNCC	3 cut(s)	65, 105, 643
NmeAIII	GCCGAG	4 cut(s)	67, 73, 121, 159
NmuCI	GTSAC	4 cut(s)	89, 305, 402, 571
OliI	CACNNNNGTG	1 cut(s)	303
PdiI	GCCGGC	4 cut(s)	6, 10, 108, 726
PfeI	GAWTC	3 cut(s)	397, 748, 809
PkrI	GCNGC	4 cut(s)	87, 271, 274, 475
Ple19I	CGATCG	1 cut(s)	164
PleI	GAGTC	3 cut(s)	37, 106, 248
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	3 cut(s)	37, 106, 248
Ppu21I	YACGTR	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	357, 802
PspCI	CACGTG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	2 cut(s)	357, 802
PspN4I	GGNNCC	3 cut(s)	65, 105, 643
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	63, 64, 817
PstNI	CAGNNNCTG	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	164
RgaI	GCGATCGC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	2 cut(s)	303, 795
SacI	GAGCTC	1 cut(s)	18
SacII	CCGCGG	1 cut(s)	474
SatI	GCNGC	4 cut(s)	86, 270, 273, 474
Sau3AI	GATC	4 cut(s)	69, 161, 480, 618
Sau96I	GGNCC	3 cut(s)	63, 64, 817
SchI	GAGTC	3 cut(s)	38, 107, 248
ScrFI	CCNGG	2 cut(s)	359, 804
SduI	GDGCHC	3 cut(s)	18, 67, 300
SfaAI	GCGATCGC	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	619
Sfr303I	CCGCGG	1 cut(s)	474
SgfI	GCGATCGC	1 cut(s)	164
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	2 cut(s)	303, 795
Sse9I	AATT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	357, 802
StyI	CCWWGG	1 cut(s)	813
TaiI	ACGT	4 cut(s)	450, 555, 573, 723
TaqI	TCGA	3 cut(s)	131, 501, 785
TasI	AATT	1 cut(s)	343
TauI	GCSGC	4 cut(s)	88, 272, 275, 476
TfiI	GAWTC	3 cut(s)	397, 748, 809
TscAI	CASTG	3 cut(s)	59, 338, 420
TseFI	GTSAC	4 cut(s)	89, 305, 402, 571
Tsp45I	GTSAC	4 cut(s)	89, 305, 402, 571
TspRI	CASTG	3 cut(s)	59, 338, 420
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.