Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008525

Physical Location & Seq

Genomic Coordinates Forward (+)

10160738 .. 10164429

Gene Structure 3692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1125000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGCTGCGATTAACGCCGCGAACAAGGGTAGCAACACTGAAACGGCGCCGTCTGCGACCGTGCAGTCGCCGCGTAACGTCGGCAAGAGTGTCAGCAGCCCGACCCAATCGCGGCGCGCCACTAGGGCTGTCTCGTCTCCTTGGACTCAAATCGTTCGGGGCGAATCTGAGCCGATTGCGGCCGTTGCTTCGTCGCCATCGGCGGCTGTGACTGAGCCAGTTGTCGCCGCCGCGGCCCCTCCGTCCCTTCCTTCCTCTTCTTCGGTTAATCAGACTCAATCTAACTCGTCTTCTCAGTCGAATTCGTCTTCTCCTCCACCGGTGGAGGAATCGGTGGGTGAGGGCTCAGAGAACGGCAATGCGGGTAAGAGGCCAGCTTGGAACAAGCCTTCTAATGGGGCCGTTGAGGTTGGGTCTGTAATGGGAGCTGTGTCTTGGCCTGCCTTGTCTGAGTCGGCTCGGGCTTCTACCAAATCGTCTTCTGAATCTCCCAAAGGTGTATCAGAACCCTCGTTGTTGTCTATCTCCGTATCGCAGGGGACTGGAACCACACCTACCTCATCACCGAAACAAGGGAATCCTTCTACTCCAAACCATACTGGACCTACTCGCCAAAAATCGATGAAACGAAATAATTCAAATGCATCCTCTAATGGCGGTGCCCCCCTGCATCAATCATCTGCTGGTCAAGGTGTTGAACTGCCTTCAAATAACCCATCTCCCAAGGAGCATACCCCTAGGAATGCATTTGGTTCACAATCTCACAGCAATAATGATCATCCGCAGCAACGTAACTCCTTCAGGAACCGAAATGGTGGTTCACATCCTCGTGGAGAAGGTTCTCATCATAACTATAGGCGGGATCAGGACCGTGGAAATCAAGATTGGAACACTCATCGAAACTTTAACAATAGAGACAACCACATGCATTCTCCAAGAGGTGTTCCTAGGATGATGAGGCCTCACCAAACACCACCTCCACCACCTCCTAATGCTGCCCAATTTATTCACCAACCGCAGATGAGGGCTTTTGGTGGTCCTATAGGGTTTGATATGCAACCTCATCAACTGGTATATGTTACACATGCACCACATGAACCACTTGTACCTTTTGTTGCACCTCTGAGACATCCCATGATGTTTCCTGCTCCAGATCCTCACCTGCATACTAAGATCATAAACCAGATAGATTATTATTTCAGTAATGACAATTTAATTAAAGATACATACTTGAGGCGGAACATGGATGACCAGGGATGGGTTCGTATTAAATTAATAGTAGGCTTCAAAAAAGTTATGAGTTTGACAGACAACATTCAGCTTATACTGGATGCTATGAGAATGTCAACTGTTGTGGAAGTACAGGGTGATAAAATAAGAAGGCGTAATGATTGGGAGAGATGGGTAATGCCAGCTGCTGAGCCTCCAAATGCCTCGGGCTCTCAAACCCCTGGAAAGGCCGGTCCGGATATGCTGTCAGCTCATATCCAAAGTATTGCACTGGACGAGAACACCACTAACAACAACAATGTTGAGAACAATAATCAGCCGCAGCTGTCAAGTGGTGATGGAACAGGTCAATTCGGTGTTCAAGCAGGTGCTGATCGCTCTATTTCAGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010150 GO:0014070 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

543

Amino Acids

58.2

Weight (kDa)

9.82

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	392 - 447	4.5e-21	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35890 AT4G35890 AT5G66100 AT5G66100
fragaria_vesca	FvH4_1g11260 FvH4_1g11260 FvH4_1g11260
malus_domestica	MD02G1125000.v1.1 MD15G1240700.v1.1
prunus_persica	Prupe.7G173400_v2.0.a1
pyrus_communis	pycom02g09760 pycom15g21230
rosa_chinensis	RchiOBHm_Chr2g0098711
rosa_laevigata	RLG00000016823
rosa_multiflora	Rmu_sc0002776.1_g000023
rosa_roxburghii	Rroxscaffold_2G00143790
rosa_rugosa	Rorug02G0074000 Rorug02G0074100
rosa_samantha	Rh2AG122000 Rh2BG125500 Rh2CG126600 Rh2DG127600
rosa_wichuraiana	Rw0G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1170, 1586
AasI	GACNNNNNNGTC	1 cut(s)	64
Acc36I	ACCTGC	2 cut(s)	1170, 1586
AccB1I	GGYRCC	2 cut(s)	46, 659
AccII	CGCG	5 cut(s)	20, 73, 112, 117, 233
AccIII	TCCGGA	1 cut(s)	1465
AclWI	GGATC	2 cut(s)	870, 1148
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	784
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	1107, 1362
AfiI	CCNNNNNNNGG	5 cut(s)	111, 395, 572, 1258, 1456
AgeI	ACCGGT	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	639, 698, 708, 1288, 1592
AjnI	CCWGG	2 cut(s)	1251, 1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	868, 900
AluBI	AGCT	6 cut(s)	377, 428, 1321, 1415, 1481, 1555
AluI	AGCT	6 cut(s)	377, 428, 1321, 1415, 1481, 1555
Alw26I	GTCTC	4 cut(s)	136, 141, 909, 1120
AlwI	GGATC	2 cut(s)	870, 1148
AlwNI	CAGNNNCTG	2 cut(s)	1418, 1601
Ama87I	CYCGRG	2 cut(s)	459, 1435
Aor13HI	TCCGGA	1 cut(s)	1465
AoxI	GGCC	7 cut(s)	180, 234, 371, 399, 437, 959, 1458
ApeKI	GCWGC	6 cut(s)	5, 96, 784, 995, 1415, 1552
ApoI	RAATTY	1 cut(s)	301
AscI	GGCGCGCC	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	1274
AsiGI	ACCGGT	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	634
AspA2I	CCTAGG	2 cut(s)	737, 947
AspLEI	GCGC	3 cut(s)	49, 117, 119
AspS9I	GGNCC	6 cut(s)	235, 399, 602, 868, 1037, 1463
AsuHPI	GGTGA	7 cut(s)	350, 555, 956, 1001, 1151, 1379, 1577
AvaI	CYCGRG	2 cut(s)	459, 1435
AvaII	GGWCC	4 cut(s)	602, 868, 1037, 1463
AvrII	CCTAGG	2 cut(s)	737, 947
BaeGI	GKGCMC	1 cut(s)	664
BanI	GGYRCC	2 cut(s)	46, 659
BanII	GRGCYC	2 cut(s)	347, 1442
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	3 cut(s)	282, 300, 471
BbvI	GCAGC	5 cut(s)	108, 796, 982, 1402, 1564
BccI	CCATC	5 cut(s)	205, 724, 1251, 1395, 1562
BceAI	ACGGC	5 cut(s)	34, 60, 167, 370, 386
BciT130I	CCWGG	2 cut(s)	1253, 1452
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	4 cut(s)	136, 141, 909, 1120
BfaI	CTAG	3 cut(s)	123, 738, 948
BfmI	CTRYAG	2 cut(s)	853, 1041
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	1170, 1586
BglI	GCCNNNNNGGC	2 cut(s)	125, 233
BlnI	CCTAGG	2 cut(s)	737, 947
BlpI	GCTNAGC	1 cut(s)	1419
Bme1390I	CCNGG	2 cut(s)	1253, 1452
Bme18I	GGWCC	4 cut(s)	602, 868, 1037, 1463
BmeT110I	CYCGRG	2 cut(s)	459, 1435
BmgT120I	GGNCC	6 cut(s)	235, 399, 602, 868, 1037, 1463
BmiI	GGNNCC	6 cut(s)	48, 237, 400, 547, 661, 806
BmrFI	CCNGG	2 cut(s)	1253, 1452
BmsI	GCATC	3 cut(s)	653, 679, 1321
BpiI	GAAGAC	3 cut(s)	282, 300, 471
BpmI	CTGGAG	1 cut(s)	1134
Bpu1102I	GCTNAGC	1 cut(s)	1419
BpuEI	CTTGAG	1 cut(s)	1252
Bsa29I	ATCGAT	1 cut(s)	620
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	9 cut(s)	140, 231, 723, 737, 871, 947, 1252, 1434, 1450
BsaWI	WCCGGW	2 cut(s)	319, 1465
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 395, 572, 1258, 1456
Bse118I	RCCGGY	2 cut(s)	319, 1460
Bse1I	ACTGG	6 cut(s)	218, 547, 604, 1074, 1332, 1506
Bse3DI	GCAATG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	1465
BseBI	CCWGG	2 cut(s)	1253, 1452
BseCI	ATCGAT	1 cut(s)	620
BseDI	CCNNGG	9 cut(s)	140, 231, 723, 737, 871, 947, 1252, 1434, 1450
BseGI	GGATG	8 cut(s)	644, 778, 823, 957, 1129, 1252, 1262, 1336
BseLI	CCNNNNNNNGG	5 cut(s)	111, 395, 572, 1258, 1456
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	7 cut(s)	159, 204, 308, 360, 441, 1115, 1410
BseNI	ACTGG	6 cut(s)	218, 547, 604, 1074, 1332, 1506
BsePI	GCGCGC	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	664
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	5 cut(s)	108, 796, 982, 1402, 1564
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	5 cut(s)	20, 73, 112, 117, 233
Bsh1285I	CGRYCG	2 cut(s)	60, 183
BshFI	GGCC	7 cut(s)	182, 236, 373, 401, 439, 961, 1460
BshNI	GGYRCC	2 cut(s)	46, 659
BshTI	ACCGGT	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	620
BsiEI	CGRYCG	2 cut(s)	60, 183
BsiHKCI	CYCGRG	2 cut(s)	459, 1435
BsiSI	CCGG	3 cut(s)	320, 1461, 1466
BslFI	GGGAC	2 cut(s)	229, 553
BslI	CCNNNNNNNGG	5 cut(s)	111, 395, 572, 1258, 1456
BsmAI	GTCTC	4 cut(s)	136, 141, 909, 1120
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	229, 553
BsmI	GAATGC	2 cut(s)	748, 928
BsnI	GGCC	7 cut(s)	182, 236, 373, 401, 439, 961, 1460
BsoBI	CYCGRG	2 cut(s)	459, 1435
Bsp1286I	GDGCHC	3 cut(s)	347, 664, 1442
Bsp13I	TCCGGA	1 cut(s)	1465
Bsp143I	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
Bsp1720I	GCTNAGC	1 cut(s)	1419
BspANI	GGCC	7 cut(s)	182, 236, 373, 401, 439, 961, 1460
BspCNI	CTCAG	7 cut(s)	160, 205, 307, 359, 442, 1116, 1411
BspDI	ATCGAT	1 cut(s)	620
BspEI	TCCGGA	1 cut(s)	1465
BspFNI	CGCG	5 cut(s)	20, 73, 112, 117, 233
BspLI	GGNNCC	6 cut(s)	48, 237, 400, 547, 661, 806
BspMI	ACCTGC	2 cut(s)	1170, 1586
BspPI	GGATC	2 cut(s)	870, 1148
BspT107I	GGYRCC	2 cut(s)	46, 659
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	2 cut(s)	319, 1460
BsrI	ACTGG	6 cut(s)	218, 547, 604, 1074, 1332, 1506
BssAI	RCCGGY	2 cut(s)	319, 1460
BssECI	CCNNGG	9 cut(s)	140, 231, 723, 737, 871, 947, 1252, 1434, 1450
BssHII	GCGCGC	1 cut(s)	115
BssMI	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	4 cut(s)	140, 723, 737, 947
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	1253, 1452
Bst4CI	ACNGT	3 cut(s)	61, 872, 1351
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	4 cut(s)	117, 375, 441, 1413
BstDEI	CTNAG	8 cut(s)	168, 213, 294, 346, 450, 1124, 1170, 1419
BstDSI	CCRYGG	2 cut(s)	231, 871
BstF5I	GGATG	8 cut(s)	644, 778, 823, 957, 1129, 1252, 1262, 1336
BstFNI	CGCG	5 cut(s)	20, 73, 112, 117, 233
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	3 cut(s)	49, 117, 119
BstKTI	GATC	5 cut(s)	778, 865, 1156, 1176, 1606
BstMAI	GTCTC	4 cut(s)	136, 141, 909, 1120
BstMBI	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
BstMCI	CGRYCG	2 cut(s)	60, 183
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 53, 70, 125, 185, 233
BstNI	CCWGG	2 cut(s)	1253, 1452
BstNSI	RCATGY	2 cut(s)	928, 1088
BstSCI	CCNGG	2 cut(s)	1251, 1450
BstSFI	CTRYAG	2 cut(s)	853, 1041
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	5 cut(s)	20, 73, 112, 117, 233
BstV1I	GCAGC	5 cut(s)	108, 796, 982, 1402, 1564
BstV2I	GAAGAC	3 cut(s)	282, 300, 471
BstX2I	RGATCY	1 cut(s)	1153
BstYI	RGATCY	1 cut(s)	1153
BstZI	CGGCCG	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	620
BsuRI	GGCC	7 cut(s)	182, 236, 373, 401, 439, 961, 1460
BsuTUI	ATCGAT	1 cut(s)	620
BtgI	CCRYGG	2 cut(s)	231, 871
BtsCI	GGATG	8 cut(s)	644, 778, 823, 957, 1129, 1252, 1262, 1336
BtsIMutI	CAGTG	2 cut(s)	36, 1499
BveI	ACCTGC	2 cut(s)	1170, 1586
Cac8I	GCNNGC	4 cut(s)	117, 375, 441, 1413
CaiI	CAGNNNCTG	2 cut(s)	1418, 1601
CfoI	GCGC	3 cut(s)	49, 117, 119
Cfr10I	RCCGGY	2 cut(s)	319, 1460
Cfr13I	GGNCC	6 cut(s)	235, 399, 602, 868, 1037, 1463
Cfr42I	CCGCGG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	620
CpoI	CGGWCCG	1 cut(s)	1463
Csp6I	GTAC	2 cut(s)	1106, 1361
CspAI	ACCGGT	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	1335, 1370
CspI	CGGWCCG	1 cut(s)	1463
CviAII	CATG	5 cut(s)	925, 1085, 1094, 1135, 1243
CviQI	GTAC	2 cut(s)	1106, 1361
DdeI	CTNAG	8 cut(s)	168, 213, 294, 346, 450, 1124, 1170, 1419
DinI	GGCGCC	1 cut(s)	48
DpnI	GATC	5 cut(s)	777, 864, 1155, 1175, 1605
DpnII	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
DrdI	GACNNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	1252
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	4 cut(s)	140, 723, 737, 947
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	2 cut(s)	347, 1442
Eco47I	GGWCC	4 cut(s)	602, 868, 1037, 1463
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	784
Eco88I	CYCGRG	2 cut(s)	459, 1435
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	1251, 1450
EcoT14I	CCWWGG	4 cut(s)	140, 723, 737, 947
EcoT22I	ATGCAT	3 cut(s)	646, 748, 930
EcoT38I	GRGCYC	2 cut(s)	347, 1442
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	4 cut(s)	140, 723, 737, 947
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	5 cut(s)	928, 1088, 1097, 1138, 1246
FaqI	GGGAC	2 cut(s)	229, 553
FatI	CATG	5 cut(s)	924, 1084, 1093, 1134, 1242
FauI	CCCGC	2 cut(s)	355, 852
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	8 cut(s)	631, 765, 810, 964, 1116, 1259, 1269, 1343
FriOI	GRGCYC	2 cut(s)	347, 1442
FspBI	CTAG	3 cut(s)	123, 738, 948
GlaI	GCGC	3 cut(s)	48, 116, 118
GsuI	CTGGAG	1 cut(s)	1134
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	7 cut(s)	182, 236, 373, 401, 439, 961, 1460
HapII	CCGG	3 cut(s)	320, 1461, 1466
HhaI	GCGC	3 cut(s)	49, 117, 119
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	928, 1088, 1097, 1138, 1246
Hin6I	GCGC	3 cut(s)	47, 115, 117
HinP1I	GCGC	3 cut(s)	47, 115, 117
HincII	GTYRAC	1 cut(s)	1347
HindII	GTYRAC	1 cut(s)	1347
HinfI	GANTC	7 cut(s)	145, 164, 274, 329, 452, 485, 577
HpaII	CCGG	3 cut(s)	320, 1461, 1466
HphI	GGTGA	7 cut(s)	350, 555, 956, 1001, 1151, 1379, 1577
Hpy166II	GTNNAC	3 cut(s)	755, 821, 1347
Hpy188I	TCNGA	7 cut(s)	169, 273, 349, 451, 484, 505, 1125
Hpy188III	TCNNGA	5 cut(s)	802, 866, 881, 1151, 1466
Hpy8I	GTNNAC	3 cut(s)	755, 821, 1347
Hpy99I	CGWCG	2 cut(s)	83, 196
HpyAV	CCTTC	8 cut(s)	257, 261, 399, 591, 714, 808, 830, 1374
HpyCH4III	ACNGT	3 cut(s)	61, 872, 1351
HpyCH4IV	ACGT	2 cut(s)	78, 790
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 53, 70, 125, 185, 233
HpyF3I	CTNAG	8 cut(s)	168, 213, 294, 346, 450, 1124, 1170, 1419
HpySE526I	ACGT	2 cut(s)	78, 790
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	5 cut(s)	928, 1088, 1097, 1138, 1246
HspAI	GCGC	3 cut(s)	47, 115, 117
KasI	GGCGCC	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	1465
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
LmnI	GCTCC	3 cut(s)	425, 727, 1153
Lsp1109I	GCAGC	5 cut(s)	108, 796, 982, 1402, 1564
LweI	GCATC	3 cut(s)	653, 679, 1321
MaeI	CTAG	3 cut(s)	123, 738, 948
MaeII	ACGT	2 cut(s)	78, 790
MaeIII	GTNAC	4 cut(s)	74, 208, 791, 1078
MalI	GATC	5 cut(s)	777, 864, 1155, 1175, 1605
MboI	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
MboII	GAAGA	5 cut(s)	249, 252, 282, 300, 471
MflI	RGATCY	1 cut(s)	1153
MhlI	GDGCHC	3 cut(s)	347, 664, 1442
MluCI	AATT	8 cut(s)	301, 634, 1001, 1210, 1215, 1271, 1580, 1624
Mly113I	GGCGCC	1 cut(s)	47
MlyI	GAGTC	3 cut(s)	139, 268, 461
Mph1103I	ATGCAT	3 cut(s)	646, 748, 930
MroI	TCCGGA	1 cut(s)	1465
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	7 cut(s)	12, 267, 906, 1214, 1218, 1269, 1274
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	3 cut(s)	233, 1415, 1555
MspI	CCGG	3 cut(s)	320, 1461, 1466
MspR9I	CCNGG	2 cut(s)	1253, 1452
Mva1269I	GAATGC	2 cut(s)	748, 928
MvaI	CCWGG	2 cut(s)	1253, 1452
MvnI	CGCG	5 cut(s)	20, 73, 112, 117, 233
MwoI	GCNNNNNNNGC	6 cut(s)	14, 53, 70, 125, 185, 233
NarI	GGCGCC	1 cut(s)	47
NdeII	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
NlaIII	CATG	5 cut(s)	928, 1088, 1097, 1138, 1246
NlaIV	GGNNCC	6 cut(s)	48, 237, 400, 547, 661, 806
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	3 cut(s)	646, 748, 930
NspI	RCATGY	2 cut(s)	928, 1088
PacI	TTAATTAA	1 cut(s)	1218
PalAI	GGCGCGCC	1 cut(s)	115
PaqCI	CACCTGC	2 cut(s)	1170, 1586
PauI	GCGCGC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	2 cut(s)	748, 928
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	4 cut(s)	164, 329, 485, 577
PinAI	ACCGGT	1 cut(s)	319
PleI	GAGTC	3 cut(s)	139, 268, 460
PluTI	GGCGCC	1 cut(s)	50
PpsI	GAGTC	3 cut(s)	139, 268, 460
PshBI	ATTAAT	1 cut(s)	1274
Psp6I	CCWGG	2 cut(s)	1251, 1450
PspGI	CCWGG	2 cut(s)	1251, 1450
PspN4I	GGNNCC	6 cut(s)	48, 237, 400, 547, 661, 806
PspPI	GGNCC	6 cut(s)	235, 399, 602, 868, 1037, 1463
PsrI	GAACNNNNNNTAC	4 cut(s)	538, 570, 1089, 1121
PstNI	CAGNNNCTG	2 cut(s)	1418, 1601
PsuI	RGATCY	1 cut(s)	1153
PteI	GCGCGC	1 cut(s)	115
PvuII	CAGCTG	2 cut(s)	1415, 1555
RsaI	GTAC	2 cut(s)	1107, 1362
RsaNI	GTAC	2 cut(s)	1106, 1361
RseI	CAYNNNNRTG	1 cut(s)	828
Rsr2I	CGGWCCG	1 cut(s)	1463
RsrII	CGGWCCG	1 cut(s)	1463
SacII	CCGCGG	1 cut(s)	234
SaqAI	TTAA	7 cut(s)	12, 267, 906, 1214, 1218, 1269, 1274
Sau3AI	GATC	5 cut(s)	775, 862, 1153, 1173, 1603
Sau96I	GGNCC	6 cut(s)	235, 399, 602, 868, 1037, 1463
SchI	GAGTC	3 cut(s)	139, 268, 461
ScrFI	CCNGG	2 cut(s)	1253, 1452
SduI	GDGCHC	3 cut(s)	347, 664, 1442
SfaNI	GCATC	3 cut(s)	653, 679, 1321
SfcI	CTRYAG	2 cut(s)	853, 1041
SfoI	GGCGCC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	234
SgrAI	CRCCGGYG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	234
SgsI	GGCGCGCC	1 cut(s)	115
SinI	GGWCC	4 cut(s)	602, 868, 1037, 1463
SmiMI	CAYNNNNRTG	1 cut(s)	828
SmlI	CTYRAG	1 cut(s)	1231
SmoI	CTYRAG	1 cut(s)	1231
Sse9I	AATT	8 cut(s)	301, 634, 1001, 1210, 1215, 1271, 1580, 1624
SseBI	AGGCCT	1 cut(s)	961
SspDI	GGCGCC	1 cut(s)	46
SspMI	CTAG	3 cut(s)	123, 738, 948
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	2 cut(s)	1251, 1450
StyI	CCWWGG	4 cut(s)	140, 723, 737, 947
TaaI	ACNGT	3 cut(s)	61, 872, 1351
TaiI	ACGT	2 cut(s)	81, 793
TaqI	TCGA	3 cut(s)	299, 620, 898
TasI	AATT	8 cut(s)	301, 634, 1001, 1210, 1215, 1271, 1580, 1624
TatI	WGTACW	1 cut(s)	1360
TauI	GCSGC	9 cut(s)	20, 73, 115, 182, 206, 230, 233, 236, 1552
TfiI	GAWTC	4 cut(s)	164, 329, 485, 577
Tru1I	TTAA	7 cut(s)	12, 267, 906, 1214, 1218, 1269, 1274
Tru9I	TTAA	7 cut(s)	12, 267, 906, 1214, 1218, 1269, 1274
TscAI	CASTG	2 cut(s)	43, 1506
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	6 cut(s)	5, 96, 784, 995, 1415, 1552
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	638, 1110
TspGWI	ACGGA	2 cut(s)	231, 517
TspRI	CASTG	2 cut(s)	43, 1506
VpaK11BI	GGWCC	4 cut(s)	602, 868, 1037, 1463
VspI	ATTAAT	1 cut(s)	1274
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	2 cut(s)	928, 1088
XmaJI	CCTAGG	2 cut(s)	737, 947
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	3 cut(s)	123, 738, 948
Zsp2I	ATGCAT	3 cut(s)	646, 748, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.