Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008525

Physical Location & Seq

Genomic Coordinates Reverse (-)

81757516 .. 81762990

Gene Structure 5475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGCTGCGATTAATCCAGGTAACAGGAACAATCCCGAAACGGCTCCGGTGGTTCAATCGCCGCGTCACGGCGGTGGTGGTGATAGTGTGAGCAGTCCGCAGTCGCGTCGGGCGGCCAAGGCGGCGGCCGCGGCGCCTTGGACGCAAATTGTGCGAGGGGAATCTGAGCCGCCGATCACGGCCGCTCCTTCCTCGCCATCATCATCGACGGCTGCTGTGACTGAGCAACAAGCTGTAGCAGCGGCTTCTTTTTCGTCGGCCTCGCCTTCTCAGTCTAATTCGCCGTCGCCGACTCCGGCGGAGGATTCAGTGGGTGAGGGCTCGGAGAACGGTAGTGGGCCCAACGGCAATGCGGGTAAGAAGCCCGCCTGGAACAAGCCGTCCAATGGAGCCATTGAGGTTGGGCCGGTAATGGGAGCTGTTTCTTGGCCTGCTTTGTCCGACGCTCGGGCTACGACTAAATCGTCTTCTGAATCTTTGAAAGGTGTATCTGATGCGCCTTTGTCCGTCTCTGTCACGCAGGGGGCTGGAACTACAACTATCTCATCACCGAAACAATTGAATTCTTCTTCGACTCCAACCCATAGTGGACCTACTCGCCAGAGATCGATGAAACAAAGAAATAATGCAAGTGCATCCTCTAATGGTGGCATCCCCCAGCATCAAATGCCAGCTGGCCAAGGTGTTGAAGTGACTCCAAATAACCCTTCACCTAAGGATCATAGCCATAGGAGTGCATTTGGGTCACAAACTCACAGCAGCAACGATCATCCACAGCAACGTAATTCCTTCAGGAACCGAAATGGTGGTCCACATCCCCGTGGAGATGGTTCTCACCATCACAACTATGGCAGCAGGCATCAGGACCGTGGAAGTCAAGATTGGAACAATCATCGAAATTTTAACAGTAGAGACAATCACATGCATCCTCACAGAGTTGTTCCTAGGGCAATGAGGCCATCTCACCAAGCACCGGCACCACCAAATGCTCCCGCGTTTATCCCCCAGCCTATGAGGTCTTTCGGTCCCATAGGGTTTGACGTGCAAGGACCACTGGTATACTTTCAACAGGATCCACTAGTACCTTTTATGGCACCACCACGGCATCCCCTGATATTTGCAGGTCCAGATCTTCAGCTGCATAATAAGATTATTAATCAGATAGATTATTATTTCAGTAATGAAAATTTAATTAAAGATACTTTCTTGCGGCGAAACATGGATGATCAGGGATGGGTTCGTGTTAAATTAATAGCAGGCTTCAACAAAGTTATGAATTTGACAGACAATATCCAGATTATACTGGATGCTTTGAGAATGTCAACTGTGGTGGAAGTACAGGGTGATAAAATAAGGAGGCGCAATGATTGGATGAGATGGGTGATGCCAGCTGCTCAGCCTCCTGCTGTTTCAAGCTCTCAGCCCCTTGGAAAATCTGGAAATGATATGCTATCAGCTCATATCCAAAGTATTTCACTTGATGAGAAGACTACTAACAACAAGAATATTGAGAACAATACCCAGCCACAGCCGTCCTCTGGTGATGGAGCAGGTCAATTCAGTGTTCAAGGAGGTGCAGATCGCACTATTTCAGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010150 GO:0014070 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

534

Amino Acids

57.01

Weight (kDa)

9.94

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	384 - 439	8.1e-22	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35890 AT4G35890 AT5G66100 AT5G66100
fragaria_vesca	FvH4_1g11260 FvH4_1g11260 FvH4_1g11260
malus_domestica	MD02G1125000.v1.1 MD15G1240700.v1.1
prunus_persica	Prupe.7G173400_v2.0.a1
pyrus_communis	pycom02g09760 pycom15g21230
rosa_chinensis	RchiOBHm_Chr2g0098711
rosa_laevigata	RLG00000016823
rosa_multiflora	Rmu_sc0002776.1_g000023
rosa_roxburghii	Rroxscaffold_2G00143790
rosa_rugosa	Rorug02G0074000 Rorug02G0074100
rosa_samantha	Rh2AG122000 Rh2BG125500 Rh2CG126600 Rh2DG127600
rosa_wichuraiana	Rw0G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
Acc36I	ACCTGC	2 cut(s)	1112, 1541
AccB1I	GGYRCC	3 cut(s)	133, 976, 1093
AccBSI	CCGCTC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	1059
AccII	CGCG	4 cut(s)	64, 106, 131, 995
AclWI	GGATC	3 cut(s)	726, 1067, 1080
AcoI	YGGCCR	4 cut(s)	114, 126, 180, 676
AcsI	RAATTY	4 cut(s)	562, 898, 1186, 1276
AcuI	CTGAAG	2 cut(s)	775, 1118
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	1083, 1338
AfiI	CCNNNNNNNGG	6 cut(s)	68, 386, 413, 447, 973, 1538
AgsI	TTSAA	8 cut(s)	56, 481, 562, 689, 1067, 1264, 1413, 1568
AhlI	ACTAGT	1 cut(s)	1078
AjiI	CACGTC	1 cut(s)	1042
AjnI	CCWGG	2 cut(s)	16, 368
AjuI	GAANNNNNNNTTGG	4 cut(s)	691, 723, 865, 897
AleI	CACNNNNGTG	1 cut(s)	72
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	7 cut(s)	233, 419, 674, 1138, 1391, 1416, 1457
AluI	AGCT	7 cut(s)	233, 419, 674, 1138, 1391, 1416, 1457
Alw26I	GTCTC	2 cut(s)	514, 906
AlwI	GGATC	3 cut(s)	726, 1067, 1080
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	9 cut(s)	114, 126, 180, 258, 338, 404, 428, 676, 956
ApaI	GGGCCC	1 cut(s)	342
ApeKI	GCWGC	7 cut(s)	5, 212, 239, 759, 852, 1138, 1391
ApoI	RAATTY	4 cut(s)	562, 898, 1186, 1276
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AseI	ATTAAT	3 cut(s)	12, 1155, 1250
AspA2I	CCTAGG	1 cut(s)	944
AspLEI	GCGC	3 cut(s)	136, 499, 1362
AspS9I	GGNCC	9 cut(s)	338, 339, 404, 590, 809, 865, 1025, 1049, 1124
AsuHPI	GGTGA	9 cut(s)	92, 326, 540, 702, 827, 956, 1355, 1393, 1553
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	6 cut(s)	590, 809, 865, 1025, 1049, 1124
AvrII	CCTAGG	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	1072
BanI	GGYRCC	3 cut(s)	133, 976, 1093
BanII	GRGCYC	2 cut(s)	323, 342
BbsI	GAAGAC	2 cut(s)	459, 1493
BbvI	GCAGC	6 cut(s)	199, 251, 771, 864, 1125, 1378
BccI	CCATC	7 cut(s)	205, 821, 846, 967, 1227, 1371, 1538
BceAI	ACGGC	9 cut(s)	57, 85, 195, 225, 268, 361, 364, 1118, 1516
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	2 cut(s)	18, 370
BclI	TGATCA	1 cut(s)	1225
BcoDI	GTCTC	2 cut(s)	514, 906
BcuI	ACTAGT	1 cut(s)	1078
BfaI	CTAG	2 cut(s)	945, 1079
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	2 cut(s)	1112, 1541
BglI	GCCNNNNNGGC	1 cut(s)	122
BglII	AGATCT	1 cut(s)	1129
BlnI	CCTAGG	1 cut(s)	944
BlpI	GCTNAGC	1 cut(s)	1395
Bme1390I	CCNGG	2 cut(s)	18, 370
Bme18I	GGWCC	6 cut(s)	590, 809, 865, 1025, 1049, 1124
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	1042
BmgT120I	GGNCC	9 cut(s)	338, 339, 404, 590, 809, 865, 1025, 1049, 1124
BmiI	GGNNCC	9 cut(s)	45, 135, 340, 391, 797, 978, 1027, 1074, 1095
BmrFI	CCNGG	2 cut(s)	18, 370
BmsI	GCATC	9 cut(s)	484, 644, 660, 670, 868, 934, 1114, 1297, 1374
BpiI	GAAGAC	2 cut(s)	459, 1493
BplI	GAGNNNNNCTC	2 cut(s)	946, 978
Bpu1102I	GCTNAGC	1 cut(s)	1395
Bsa29I	ATCGAT	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	9 cut(s)	117, 129, 137, 679, 820, 868, 944, 1100, 1426
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 386, 413, 447, 973, 1538
Bse118I	RCCGGY	2 cut(s)	406, 973
Bse1I	ACTGG	2 cut(s)	1059, 1308
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	3 cut(s)	355, 957, 1369
BseBI	CCWGG	2 cut(s)	18, 370
BseCI	ATCGAT	1 cut(s)	608
BseDI	CCNNGG	9 cut(s)	117, 129, 137, 679, 820, 868, 944, 1100, 1426
BseLI	CCNNNNNNNGG	6 cut(s)	68, 386, 413, 447, 973, 1538
BseMI	GCAATG	3 cut(s)	355, 957, 1369
BseMII	CTCAG	5 cut(s)	156, 213, 284, 1409, 1433
BseNI	ACTGG	2 cut(s)	1059, 1308
BseSI	GKGCMC	1 cut(s)	342
BseX3I	CGGCCG	2 cut(s)	126, 180
BseXI	GCAGC	6 cut(s)	199, 251, 771, 864, 1125, 1378
BseYI	CCCAGC	3 cut(s)	657, 1005, 1521
BsgI	GTGCAG	1 cut(s)	1596
Bsh1236I	CGCG	4 cut(s)	64, 106, 131, 995
Bsh1285I	CGRYCG	2 cut(s)	129, 183
BshFI	GGCC	9 cut(s)	116, 128, 182, 260, 340, 406, 430, 678, 958
BshNI	GGYRCC	3 cut(s)	133, 976, 1093
BshVI	ATCGAT	1 cut(s)	608
BsiEI	CGRYCG	2 cut(s)	129, 183
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	4 cut(s)	47, 296, 407, 974
BslFI	GGGAC	1 cut(s)	1011
BslI	CCNNNNNNNGG	6 cut(s)	68, 386, 413, 447, 973, 1538
BsmAI	GTCTC	2 cut(s)	514, 906
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	1011
BsnI	GGCC	9 cut(s)	116, 128, 182, 260, 340, 406, 430, 678, 958
BsoBI	CYCGRG	1 cut(s)	447
Bsp120I	GGGCCC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	323, 342
Bsp143I	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
Bsp1720I	GCTNAGC	1 cut(s)	1395
BspANI	GGCC	9 cut(s)	116, 128, 182, 260, 340, 406, 430, 678, 958
BspCNI	CTCAG	5 cut(s)	157, 214, 283, 1408, 1432
BspDI	ATCGAT	1 cut(s)	608
BspFNI	CGCG	4 cut(s)	64, 106, 131, 995
BspLI	GGNNCC	9 cut(s)	45, 135, 340, 391, 797, 978, 1027, 1074, 1095
BspMI	ACCTGC	2 cut(s)	1112, 1541
BspPI	GGATC	3 cut(s)	726, 1067, 1080
BspT107I	GGYRCC	3 cut(s)	133, 976, 1093
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	3 cut(s)	355, 957, 1369
BsrFI	RCCGGY	2 cut(s)	406, 973
BsrI	ACTGG	2 cut(s)	1059, 1308
BssAI	RCCGGY	2 cut(s)	406, 973
BssECI	CCNNGG	9 cut(s)	117, 129, 137, 679, 820, 868, 944, 1100, 1426
BssMI	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
BssNAI	GTATAC	1 cut(s)	1060
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	5 cut(s)	117, 137, 679, 944, 1426
Bst1107I	GTATAC	1 cut(s)	1060
Bst2UI	CCWGG	2 cut(s)	18, 370
Bst4CI	ACNGT	4 cut(s)	332, 869, 908, 1327
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	2 cut(s)	151, 667
BstC8I	GCNNGC	7 cut(s)	366, 432, 672, 676, 857, 1258, 1389
BstDEI	CTNAG	6 cut(s)	165, 222, 270, 714, 1395, 1419
BstDSI	CCRYGG	4 cut(s)	129, 820, 868, 1100
BstFNI	CGCG	4 cut(s)	64, 106, 131, 995
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	3 cut(s)	136, 499, 1362
BstKTI	GATC	8 cut(s)	177, 608, 721, 769, 1075, 1132, 1228, 1582
BstMAI	GTCTC	2 cut(s)	514, 906
BstMBI	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
BstMCI	CGRYCG	2 cut(s)	129, 183
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 122, 128, 131, 142, 151, 239, 667
BstNI	CCWGG	2 cut(s)	18, 370
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	2 cut(s)	16, 368
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	4 cut(s)	64, 106, 131, 995
BstV1I	GCAGC	6 cut(s)	199, 251, 771, 864, 1125, 1378
BstV2I	GAAGAC	2 cut(s)	459, 1493
BstX2I	RGATCY	2 cut(s)	1072, 1129
BstYI	RGATCY	2 cut(s)	1072, 1129
BstZ17I	GTATAC	1 cut(s)	1060
BstZI	CGGCCG	2 cut(s)	126, 180
Bsu15I	ATCGAT	1 cut(s)	608
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	9 cut(s)	116, 128, 182, 260, 340, 406, 430, 678, 958
BsuTUI	ATCGAT	1 cut(s)	608
BtgI	CCRYGG	4 cut(s)	129, 820, 868, 1100
BtrI	CACGTC	1 cut(s)	1042
BtsIMutI	CAGTG	3 cut(s)	315, 1052, 1567
BveI	ACCTGC	2 cut(s)	1112, 1541
Cac8I	GCNNGC	7 cut(s)	366, 432, 672, 676, 857, 1258, 1389
CciNI	GCGGCCGC	1 cut(s)	126
CfoI	GCGC	3 cut(s)	136, 499, 1362
Cfr10I	RCCGGY	2 cut(s)	406, 973
Cfr13I	GGNCC	9 cut(s)	338, 339, 404, 590, 809, 865, 1025, 1049, 1124
Cfr42I	CCGCGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	608
CseI	GACGC	4 cut(s)	53, 95, 151, 452
Csp6I	GTAC	2 cut(s)	1082, 1337
CspCI	CAANNNNNGTGG	2 cut(s)	1311, 1346
CviAII	CATG	2 cut(s)	922, 1219
CviQI	GTAC	2 cut(s)	1082, 1337
DdeI	CTNAG	6 cut(s)	165, 222, 270, 714, 1395, 1419
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	8 cut(s)	176, 607, 720, 768, 1074, 1131, 1227, 1581
DpnII	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	4 cut(s)	114, 126, 180, 676
EagI	CGGCCG	2 cut(s)	126, 180
EciI	GGCGGA	1 cut(s)	314
EclXI	CGGCCG	2 cut(s)	126, 180
Eco130I	CCWWGG	5 cut(s)	117, 137, 679, 944, 1426
Eco24I	GRGCYC	2 cut(s)	323, 342
Eco47I	GGWCC	6 cut(s)	590, 809, 865, 1025, 1049, 1124
Eco52I	CGGCCG	2 cut(s)	126, 180
Eco57I	CTGAAG	2 cut(s)	775, 1118
Eco81I	CCTNAGG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	16, 368
EcoT14I	CCWWGG	5 cut(s)	117, 137, 679, 944, 1426
EcoT22I	ATGCAT	1 cut(s)	927
EcoT38I	GRGCYC	2 cut(s)	323, 342
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
ErhI	CCWWGG	5 cut(s)	117, 137, 679, 944, 1426
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	2 cut(s)	925, 1222
FaqI	GGGAC	1 cut(s)	1011
FatI	CATG	2 cut(s)	921, 1218
FauI	CCCGC	3 cut(s)	346, 373, 1000
FbaI	TGATCA	1 cut(s)	1225
FblI	GTMKAC	1 cut(s)	1059
FriOI	GRGCYC	2 cut(s)	323, 342
FspBI	CTAG	2 cut(s)	945, 1079
GlaI	GCGC	3 cut(s)	135, 498, 1361
GsaI	CCCAGC	3 cut(s)	661, 1009, 1525
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	9 cut(s)	116, 128, 182, 260, 340, 406, 430, 678, 958
HapII	CCGG	4 cut(s)	47, 296, 407, 974
HgaI	GACGC	4 cut(s)	53, 95, 151, 452
HhaI	GCGC	3 cut(s)	136, 499, 1362
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	925, 1222
Hin6I	GCGC	3 cut(s)	134, 497, 1360
HinP1I	GCGC	3 cut(s)	134, 497, 1360
HincII	GTYRAC	1 cut(s)	1323
HindII	GTYRAC	1 cut(s)	1323
HinfI	GANTC	6 cut(s)	161, 292, 305, 473, 574, 694
HpaII	CCGG	4 cut(s)	47, 296, 407, 974
HphI	GGTGA	9 cut(s)	92, 326, 540, 702, 827, 956, 1355, 1393, 1553
Hpy166II	GTNNAC	4 cut(s)	590, 812, 1060, 1323
Hpy188I	TCNGA	6 cut(s)	166, 325, 442, 472, 493, 1161
Hpy188III	TCNNGA	7 cut(s)	35, 793, 863, 878, 1127, 1294, 1437
Hpy8I	GTNNAC	4 cut(s)	590, 812, 1060, 1323
Hpy99I	CGWCG	5 cut(s)	111, 211, 259, 289, 446
HpyAV	CCTTC	4 cut(s)	198, 276, 717, 799
HpyCH4III	ACNGT	4 cut(s)	332, 869, 908, 1327
HpyCH4IV	ACGT	2 cut(s)	781, 1041
HpyCH4V	TGCA	8 cut(s)	629, 635, 737, 925, 1045, 1121, 1141, 1577
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 122, 128, 131, 142, 151, 239, 667
HpyF3I	CTNAG	6 cut(s)	165, 222, 270, 714, 1395, 1419
HpySE526I	ACGT	2 cut(s)	781, 1041
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	925, 1222
HspAI	GCGC	3 cut(s)	134, 497, 1360
KasI	GGCGCC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	1225
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
LmnI	GCTCC	6 cut(s)	49, 190, 389, 416, 994, 1547
Lsp1109I	GCAGC	6 cut(s)	199, 251, 771, 864, 1125, 1378
LweI	GCATC	9 cut(s)	484, 644, 660, 670, 868, 934, 1114, 1297, 1374
MaeI	CTAG	2 cut(s)	945, 1079
MaeII	ACGT	2 cut(s)	781, 1041
MaeIII	GTNAC	6 cut(s)	20, 65, 217, 514, 691, 744
MalI	GATC	8 cut(s)	176, 607, 720, 768, 1074, 1131, 1227, 1581
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
MboII	GAAGA	5 cut(s)	459, 558, 561, 1124, 1498
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	2 cut(s)	1072, 1129
MhlI	GDGCHC	2 cut(s)	323, 342
MlsI	TGGCCA	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	678
Mly113I	GGCGCC	1 cut(s)	134
MlyI	GAGTC	3 cut(s)	286, 568, 688
MmeI	TCCRAC	2 cut(s)	465, 602
Mox20I	TGGCCA	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	7 cut(s)	12, 903, 1155, 1190, 1194, 1245, 1250
MslI	CAYNNNNRTG	4 cut(s)	72, 732, 819, 846
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	5 cut(s)	131, 242, 674, 1138, 1391
MspI	CCGG	4 cut(s)	47, 296, 407, 974
MspR9I	CCNGG	2 cut(s)	18, 370
MunI	CAATTG	1 cut(s)	557
MvaI	CCWGG	2 cut(s)	18, 370
MvnI	CGCG	4 cut(s)	64, 106, 131, 995
MwoI	GCNNNNNNNGC	8 cut(s)	119, 122, 128, 131, 142, 151, 239, 667
NarI	GGCGCC	1 cut(s)	134
NdeII	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
NlaIII	CATG	2 cut(s)	925, 1222
NlaIV	GGNNCC	9 cut(s)	45, 135, 340, 391, 797, 978, 1027, 1074, 1095
NmuCI	GTSAC	5 cut(s)	65, 217, 514, 691, 744
NotI	GCGGCCGC	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	927
NspI	RCATGY	1 cut(s)	925
OliI	CACNNNNGTG	1 cut(s)	72
PacI	TTAATTAA	1 cut(s)	1194
PcsI	WCGNNNNNNNCGW	2 cut(s)	287, 461
PfeI	GAWTC	3 cut(s)	161, 305, 473
PleI	GAGTC	3 cut(s)	286, 568, 688
PluTI	GGCGCC	1 cut(s)	137
PpsI	GAGTC	3 cut(s)	286, 568, 688
PshBI	ATTAAT	3 cut(s)	12, 1155, 1250
Psp6I	CCWGG	2 cut(s)	16, 368
PspFI	CCCAGC	3 cut(s)	657, 1005, 1521
PspGI	CCWGG	2 cut(s)	16, 368
PspN4I	GGNNCC	9 cut(s)	45, 135, 340, 391, 797, 978, 1027, 1074, 1095
PspOMI	GGGCCC	1 cut(s)	338
PspPI	GGNCC	9 cut(s)	338, 339, 404, 590, 809, 865, 1025, 1049, 1124
PsuI	RGATCY	2 cut(s)	1072, 1129
PvuII	CAGCTG	3 cut(s)	674, 1138, 1391
RsaI	GTAC	2 cut(s)	1083, 1338
RsaNI	GTAC	2 cut(s)	1082, 1337
RseI	CAYNNNNRTG	4 cut(s)	72, 732, 819, 846
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	7 cut(s)	12, 903, 1155, 1190, 1194, 1245, 1250
Sau3AI	GATC	8 cut(s)	174, 605, 718, 766, 1072, 1129, 1225, 1579
Sau96I	GGNCC	9 cut(s)	338, 339, 404, 590, 809, 865, 1025, 1049, 1124
SchI	GAGTC	3 cut(s)	286, 568, 688
ScrFI	CCNGG	2 cut(s)	18, 370
SduI	GDGCHC	2 cut(s)	323, 342
SfaNI	GCATC	9 cut(s)	484, 644, 660, 670, 868, 934, 1114, 1297, 1374
SfcI	CTRYAG	1 cut(s)	234
SfoI	GGCGCC	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SinI	GGWCC	6 cut(s)	590, 809, 865, 1025, 1049, 1124
SmiMI	CAYNNNNRTG	4 cut(s)	72, 732, 819, 846
SpeI	ACTAGT	1 cut(s)	1078
SspDI	GGCGCC	1 cut(s)	133
SspI	AATATT	1 cut(s)	1507
SspMI	CTAG	2 cut(s)	945, 1079
StyD4I	CCNGG	2 cut(s)	16, 368
StyI	CCWWGG	5 cut(s)	117, 137, 679, 944, 1426
TaaI	ACNGT	4 cut(s)	332, 869, 908, 1327
TaiI	ACGT	2 cut(s)	784, 1044
TaqI	TCGA	4 cut(s)	206, 572, 608, 895
TaqII	GACCGA	1 cut(s)	1013
TatI	WGTACW	1 cut(s)	1336
TfiI	GAWTC	3 cut(s)	161, 305, 473
Tru1I	TTAA	7 cut(s)	12, 903, 1155, 1190, 1194, 1245, 1250
Tru9I	TTAA	7 cut(s)	12, 903, 1155, 1190, 1194, 1245, 1250
TscAI	CASTG	3 cut(s)	315, 1059, 1567
TseFI	GTSAC	5 cut(s)	65, 217, 514, 691, 744
TseI	GCWGC	7 cut(s)	5, 212, 239, 759, 852, 1138, 1391
Tsp45I	GTSAC	5 cut(s)	65, 217, 514, 691, 744
TspDTI	ATGAA	3 cut(s)	626, 1197, 1289
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	3 cut(s)	315, 1059, 1567
VpaK11BI	GGWCC	6 cut(s)	590, 809, 865, 1025, 1049, 1124
VspI	ATTAAT	3 cut(s)	12, 1155, 1250
XapI	RAATTY	4 cut(s)	562, 898, 1186, 1276
XceI	RCATGY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XmaJI	CCTAGG	1 cut(s)	944
XmiI	GTMKAC	1 cut(s)	1059
XspI	CTAG	2 cut(s)	945, 1079
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.