Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008525

Physical Location & Seq

Genomic Coordinates Forward (+)

19817708 .. 19823738

Gene Structure 6031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1240700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGCTGCGATTAACGCCACGAACAAGAGCAGCAACCCCGAAACGGCGCCGTCTCCGGCCTTGCAGTCGCCGCGTAACGCTGGCGAGAGTGTCAGCAGCCCGACCCAATCGCGGCGCCCCACCAGGTCAGTCTCGTCGCCTTGGACTCAAATCGTCCGCGGCGAATCTGAGCCGATCGCGGCCGTTCCTTCGTCGCCATCGGCGGCTGTGACTGAGCCAGCTGTCGCTGCGGCGGCACCTCCTCCCCTTCCTTCTTCTTTTTCGGCTAATCAGACTCAGTCTAACTCGGCTCCTCAGTCGAATTCGTCTTCTCCTCCGCCGGTGGAGGAGTCGGTGGGTGAGGGATCAGATAACGGCAATGCGGGTAAGAGGCCAGCTTGGAACAAGCCTTCTAATGGGGCTGTCGAGGTTGGGCCTGTAATGGGAGCTGTGTCTTGGCCTGCCTTGTCCGAGTCGGCTCGGGCTTCCACCAAATCGTCTTCTGAATCTCTCAAAGGTGTATCAGAACCCTCGTTGTTGTCTGTCTCCGTACCGCAGGGAACTGGAATCACAACTATCTCATCACCGAAGCAAGGGAATCCTTCTACTCCAAACCATACTGGACTTATGCGCCAGAGATCGATGAAACGAAATAATGCAAATGCCTCCTCTAATGGTGGTGCTCCCCAGCATCAATCATCTTCTGGTCAAGGTGGTGAACTGCCTTCAAGTAACCCACCTCCGAAGGAGCATACCCATAGAAATGCATTTGGGTCGCAATCTCACAGCAATAATGATCATCCGCAACAACGTAACTCCTTCAGGAACCGAAATAGTGGTTCACATCCTCGTGGAGAAGGTTCTCATCACAACTATAGGCGGGATCAGGACCGTGGAAATCAAGATTGGAACAGTCCTCGAAATTTTAACAATAGAGACAACCACATGCATTCTCCAAGAGGTGTCCCTAGGATGATGAGGCCTCACCAAACACCTCCACCACCACCACCTAATGCTGCCCAATTTATTCACCAGCCGCAGATGAGGGCTTTTGGTGGTCCTATAGGGTTTGATATGCAACCTCATCAACTGGTATATGTTGCACATTCACCGCATGAGCCACTTGTACCTTTTGTTGCACCACTGAGACATCCCATGATGTTTCCTGCTCCAGATCCTCAGCTGCATACTAAAATCATTAATCAGATAGATTATTATTTCAGTAATGACAATTTAATTAAAGATACATACTTGAGGCGGAACATGGATGACCAGGGATGGGTTCGTATTAAATTAATAGCAGGCTTCAAAAAAGTTCTGAGTTTGACAGACAACATTCAGCTTATACTGGATGCTATGAGAATGTCAACTGTTGTGGAAGTACAGGGTGATAAAATAAGGCGGCGTAATGATTGGGAGAGATGGGTAATGCCAGCCGCTCAGCCTCCAAATGCCTCAGGCTCTCAAGCCCTTGGAAACTCCGGTCCGGATACGCTGTCAGCTCATATCCAAAGTATTGCACTGGACGAGAAGACCACTAACAACAATGTTGAGAACAATAATCAGCCGCAGCCATCCAGTGGTGATGGAACAGGTCAATTCGGTGTTCAAGCAGGTGCTGATCGCTCTATTTCAGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010150 GO:0014070 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

542

Amino Acids

58.17

Weight (kDa)

9.8

Isoelectric Point (pI)

66.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	392 - 447	1.8e-21	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35890 AT4G35890 AT5G66100 AT5G66100
fragaria_vesca	FvH4_1g11260 FvH4_1g11260 FvH4_1g11260
malus_domestica	MD02G1125000.v1.1 MD15G1240700.v1.1
prunus_persica	Prupe.7G173400_v2.0.a1
pyrus_communis	pycom02g09760 pycom15g21230
rosa_chinensis	RchiOBHm_Chr2g0098711
rosa_laevigata	RLG00000016823
rosa_multiflora	Rmu_sc0002776.1_g000023
rosa_roxburghii	Rroxscaffold_2G00143790
rosa_rugosa	Rorug02G0074000 Rorug02G0074100
rosa_samantha	Rh2AG122000 Rh2BG125500 Rh2CG126600 Rh2DG127600
rosa_wichuraiana	Rw0G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1583
Acc36I	ACCTGC	1 cut(s)	1583
AccB1I	GGYRCC	3 cut(s)	46, 114, 235
AccB7I	CCANNNNNTGG	1 cut(s)	1559
AccBSI	CCGCTC	1 cut(s)	1418
AccII	CGCG	4 cut(s)	73, 112, 159, 179
AccIII	TCCGGA	1 cut(s)	1465
AclWI	GGATC	3 cut(s)	352, 870, 1148
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	301, 901
AcuI	CTGAAG	1 cut(s)	784
AcyI	GRCGYC	2 cut(s)	47, 115
AfaI	GTAC	3 cut(s)	531, 1107, 1362
AfiI	CCNNNNNNNGG	7 cut(s)	43, 111, 395, 422, 572, 1258, 1559
AgsI	TTSAA	3 cut(s)	708, 1288, 1589
AjnI	CCWGG	2 cut(s)	122, 1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	868, 900
AluBI	AGCT	6 cut(s)	221, 377, 428, 1162, 1321, 1481
AluI	AGCT	6 cut(s)	221, 377, 428, 1162, 1321, 1481
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	5 cut(s)	57, 136, 529, 909, 1120
AlwI	GGATC	3 cut(s)	352, 870, 1148
AlwNI	CAGNNNCTG	1 cut(s)	1598
Ama87I	CYCGRG	1 cut(s)	459
Aor13HI	TCCGGA	1 cut(s)	1465
AoxI	GGCC	6 cut(s)	57, 180, 371, 413, 437, 959
ApeKI	GCWGC	7 cut(s)	5, 30, 96, 227, 995, 1162, 1549
ApoI	RAATTY	2 cut(s)	301, 901
AseI	ATTAAT	2 cut(s)	1179, 1274
AspA2I	CCTAGG	1 cut(s)	947
AspLEI	GCGC	3 cut(s)	49, 117, 612
AspS9I	GGNCC	4 cut(s)	413, 868, 1037, 1463
AsuHPI	GGTGA	8 cut(s)	350, 555, 707, 956, 1001, 1080, 1379, 1574
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	3 cut(s)	868, 1037, 1463
AvrII	CCTAGG	1 cut(s)	947
AxyI	CCTNAGG	1 cut(s)	1435
BanI	GGYRCC	3 cut(s)	46, 114, 235
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	3 cut(s)	300, 471, 1517
Bbv12I	GWGCWC	1 cut(s)	664
BbvCI	CCTCAGC	1 cut(s)	1158
BbvI	GCAGC	6 cut(s)	42, 108, 214, 982, 1149, 1561
BccI	CCATC	5 cut(s)	205, 1251, 1395, 1559, 1561
BceAI	ACGGC	4 cut(s)	34, 60, 167, 370
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	124, 1253
BciVI	GTATCC	1 cut(s)	1462
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	5 cut(s)	57, 136, 529, 909, 1120
BfaI	CTAG	1 cut(s)	948
BfmI	CTRYAG	2 cut(s)	853, 1041
BfoI	RGCGCY	2 cut(s)	50, 118
BfuAI	ACCTGC	1 cut(s)	1583
BfuI	GTATCC	1 cut(s)	1462
BlnI	CCTAGG	1 cut(s)	947
BlpI	GCTNAGC	1 cut(s)	1419
Bme1390I	CCNGG	2 cut(s)	124, 1253
Bme18I	GGWCC	3 cut(s)	868, 1037, 1463
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	4 cut(s)	413, 868, 1037, 1463
BmiI	GGNNCC	5 cut(s)	48, 116, 237, 291, 806
BmrFI	CCNGG	2 cut(s)	124, 1253
BmsI	GCATC	2 cut(s)	679, 1321
BpiI	GAAGAC	3 cut(s)	300, 471, 1517
BpmI	CTGGAG	1 cut(s)	1134
Bpu10I	CCTNAGC	1 cut(s)	1158
Bpu1102I	GCTNAGC	1 cut(s)	1419
BpuEI	CTTGAG	2 cut(s)	1252, 1428
Bsa29I	ATCGAT	1 cut(s)	620
BsaHI	GRCGYC	2 cut(s)	47, 115
BsaJI	CCNNGG	6 cut(s)	140, 157, 871, 947, 1252, 1450
BsaWI	WCCGGW	2 cut(s)	1460, 1465
Bsc4I	CCNNNNNNNGG	7 cut(s)	43, 111, 395, 422, 572, 1258, 1559
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	6 cut(s)	547, 604, 1074, 1332, 1506, 1557
Bse21I	CCTNAGG	1 cut(s)	1435
Bse3DI	GCAATG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	1465
BseBI	CCWGG	2 cut(s)	124, 1253
BseCI	ATCGAT	1 cut(s)	620
BseDI	CCNNGG	6 cut(s)	140, 157, 871, 947, 1252, 1450
BseGI	GGATG	8 cut(s)	778, 823, 957, 1129, 1252, 1262, 1336, 1553
BseLI	CCNNNNNNNGG	7 cut(s)	43, 111, 395, 422, 572, 1258, 1559
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	9 cut(s)	159, 204, 290, 308, 1115, 1172, 1289, 1433, 1449
BseNI	ACTGG	6 cut(s)	547, 604, 1074, 1332, 1506, 1557
BseRI	GAGGAG	5 cut(s)	231, 282, 303, 341, 637
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	6 cut(s)	42, 108, 214, 982, 1149, 1561
BseYI	CCCAGC	1 cut(s)	666
Bsh1236I	CGCG	4 cut(s)	73, 112, 159, 179
Bsh1285I	CGRYCG	2 cut(s)	177, 183
BshFI	GGCC	6 cut(s)	59, 182, 373, 415, 439, 961
BshNI	GGYRCC	3 cut(s)	46, 114, 235
BshVI	ATCGAT	1 cut(s)	620
BsiEI	CGRYCG	2 cut(s)	177, 183
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	4 cut(s)	56, 320, 1461, 1466
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	7 cut(s)	43, 111, 395, 422, 572, 1258, 1559
BsmAI	GTCTC	5 cut(s)	57, 136, 529, 909, 1120
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	929
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	6 cut(s)	59, 182, 373, 415, 439, 961
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp13I	TCCGGA	1 cut(s)	1465
Bsp143I	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
Bsp1720I	GCTNAGC	1 cut(s)	1419
BspANI	GGCC	6 cut(s)	59, 182, 373, 415, 439, 961
BspCNI	CTCAG	9 cut(s)	160, 205, 289, 307, 1116, 1171, 1290, 1432, 1448
BspDI	ATCGAT	1 cut(s)	620
BspEI	TCCGGA	1 cut(s)	1465
BspFNI	CGCG	4 cut(s)	73, 112, 159, 179
BspLI	GGNNCC	5 cut(s)	48, 116, 237, 291, 806
BspMI	ACCTGC	1 cut(s)	1583
BspPI	GGATC	3 cut(s)	352, 870, 1148
BspT107I	GGYRCC	3 cut(s)	46, 114, 235
BsrBI	CCGCTC	1 cut(s)	1418
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	319
BsrI	ACTGG	6 cut(s)	547, 604, 1074, 1332, 1506, 1557
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	6 cut(s)	140, 157, 871, 947, 1252, 1450
BssMI	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
BssNI	GRCGYC	2 cut(s)	47, 115
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	3 cut(s)	140, 947, 1450
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	124, 1253
Bst4CI	ACNGT	3 cut(s)	872, 893, 1351
BstACI	GRCGYC	2 cut(s)	47, 115
BstC8I	GCNNGC	6 cut(s)	82, 219, 375, 441, 1282, 1413
BstDEI	CTNAG	9 cut(s)	168, 213, 276, 294, 1124, 1158, 1298, 1419, 1435
BstDSI	CCRYGG	2 cut(s)	157, 871
BstF5I	GGATG	8 cut(s)	778, 823, 957, 1129, 1252, 1262, 1336, 1553
BstFNI	CGCG	4 cut(s)	73, 112, 159, 179
BstH2I	RGCGCY	2 cut(s)	50, 118
BstHHI	GCGC	3 cut(s)	49, 117, 612
BstKTI	GATC	7 cut(s)	177, 347, 620, 778, 865, 1156, 1603
BstMAI	GTCTC	5 cut(s)	57, 136, 529, 909, 1120
BstMBI	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
BstMCI	CGRYCG	2 cut(s)	177, 183
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 70, 227, 233
BstNI	CCWGG	2 cut(s)	124, 1253
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	2 cut(s)	122, 1251
BstSFI	CTRYAG	2 cut(s)	853, 1041
BstUI	CGCG	4 cut(s)	73, 112, 159, 179
BstV1I	GCAGC	6 cut(s)	42, 108, 214, 982, 1149, 1561
BstV2I	GAAGAC	3 cut(s)	300, 471, 1517
BstX2I	RGATCY	1 cut(s)	1153
BstYI	RGATCY	1 cut(s)	1153
BstZI	CGGCCG	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	620
Bsu36I	CCTNAGG	1 cut(s)	1435
BsuI	GTATCC	1 cut(s)	1462
BsuRI	GGCC	6 cut(s)	59, 182, 373, 415, 439, 961
BsuTUI	ATCGAT	1 cut(s)	620
BtgI	CCRYGG	2 cut(s)	157, 871
BtsCI	GGATG	8 cut(s)	778, 823, 957, 1129, 1252, 1262, 1336, 1553
BtsIMutI	CAGTG	3 cut(s)	1121, 1499, 1564
BveI	ACCTGC	1 cut(s)	1583
Cac8I	GCNNGC	6 cut(s)	82, 219, 375, 441, 1282, 1413
CaiI	CAGNNNCTG	1 cut(s)	1598
CfoI	GCGC	3 cut(s)	49, 117, 612
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	413, 868, 1037, 1463
Cfr42I	CCGCGG	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	620
CpoI	CGGWCCG	1 cut(s)	1463
CsiI	ACCWGGT	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	530, 1106, 1361
CspCI	CAANNNNNGTGG	2 cut(s)	1335, 1370
CspI	CGGWCCG	1 cut(s)	1463
CviAII	CATG	4 cut(s)	925, 1094, 1135, 1243
CviQI	GTAC	3 cut(s)	530, 1106, 1361
DdeI	CTNAG	9 cut(s)	168, 213, 276, 294, 1124, 1158, 1298, 1419, 1435
DinI	GGCGCC	2 cut(s)	48, 116
DpnI	GATC	7 cut(s)	176, 346, 619, 777, 864, 1155, 1602
DpnII	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
EciI	GGCGGA	2 cut(s)	306, 1252
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	3 cut(s)	140, 947, 1450
Eco147I	AGGCCT	1 cut(s)	961
Eco47I	GGWCC	3 cut(s)	868, 1037, 1463
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	784
Eco81I	CCTNAGG	1 cut(s)	1435
Eco88I	CYCGRG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	122, 1251
EcoT14I	CCWWGG	3 cut(s)	140, 947, 1450
EcoT22I	ATGCAT	2 cut(s)	748, 930
EgeI	GGCGCC	2 cut(s)	48, 116
EheI	GGCGCC	2 cut(s)	48, 116
ErhI	CCWWGG	3 cut(s)	140, 947, 1450
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	4 cut(s)	928, 1097, 1138, 1246
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	4 cut(s)	924, 1093, 1134, 1242
FauI	CCCGC	2 cut(s)	355, 852
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	8 cut(s)	765, 810, 964, 1116, 1259, 1269, 1343, 1540
FspBI	CTAG	1 cut(s)	948
GlaI	GCGC	3 cut(s)	48, 116, 611
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	1 cut(s)	1134
HaeII	RGCGCY	2 cut(s)	50, 118
HaeIII	GGCC	6 cut(s)	59, 182, 373, 415, 439, 961
HapII	CCGG	4 cut(s)	56, 320, 1461, 1466
HhaI	GCGC	3 cut(s)	49, 117, 612
Hin1I	GRCGYC	2 cut(s)	47, 115
Hin1II	CATG	4 cut(s)	928, 1097, 1138, 1246
Hin6I	GCGC	3 cut(s)	47, 115, 610
HinP1I	GCGC	3 cut(s)	47, 115, 610
HincII	GTYRAC	1 cut(s)	1347
HindII	GTYRAC	1 cut(s)	1347
HinfI	GANTC	8 cut(s)	145, 164, 274, 329, 452, 485, 546, 577
HpaII	CCGG	4 cut(s)	56, 320, 1461, 1466
HphI	GGTGA	8 cut(s)	350, 555, 707, 956, 1001, 1080, 1379, 1574
Hpy166II	GTNNAC	3 cut(s)	698, 821, 1347
Hpy188I	TCNGA	9 cut(s)	169, 273, 349, 451, 484, 505, 723, 1185, 1299
Hpy188III	TCNNGA	5 cut(s)	802, 866, 881, 1151, 1466
Hpy8I	GTNNAC	3 cut(s)	698, 821, 1347
Hpy99I	CGWCG	2 cut(s)	139, 196
HpyAV	CCTTC	9 cut(s)	198, 257, 261, 399, 591, 714, 718, 808, 830
HpyCH4III	ACNGT	3 cut(s)	872, 893, 1351
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	9 cut(s)	64, 638, 746, 928, 1057, 1082, 1118, 1165, 1499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 70, 227, 233
HpyF3I	CTNAG	9 cut(s)	168, 213, 276, 294, 1124, 1158, 1298, 1419, 1435
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	2 cut(s)	47, 115
Hsp92II	CATG	4 cut(s)	928, 1097, 1138, 1246
HspAI	GCGC	3 cut(s)	47, 115, 610
KasI	GGCGCC	2 cut(s)	46, 114
Kpn2I	TCCGGA	1 cut(s)	1465
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
LmnI	GCTCC	5 cut(s)	295, 425, 667, 727, 1153
Lsp1109I	GCAGC	6 cut(s)	42, 108, 214, 982, 1149, 1561
LweI	GCATC	2 cut(s)	679, 1321
MabI	ACCWGGT	1 cut(s)	122
MaeI	CTAG	1 cut(s)	948
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	4 cut(s)	74, 208, 710, 791
MalI	GATC	7 cut(s)	176, 346, 619, 777, 864, 1155, 1602
MbiI	CCGCTC	1 cut(s)	1418
MboI	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
MboII	GAAGA	5 cut(s)	246, 300, 471, 672, 1522
MflI	RGATCY	1 cut(s)	1153
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	8 cut(s)	301, 901, 1001, 1210, 1215, 1271, 1577, 1621
Mly113I	GGCGCC	2 cut(s)	47, 115
MlyI	GAGTC	4 cut(s)	139, 268, 338, 461
Mph1103I	ATGCAT	2 cut(s)	748, 930
MroI	TCCGGA	1 cut(s)	1465
MseI	TTAA	7 cut(s)	12, 906, 1179, 1214, 1218, 1269, 1274
MslI	CAYNNNNRTG	2 cut(s)	741, 828
MspA1I	CMGCKG	3 cut(s)	159, 221, 1162
MspI	CCGG	4 cut(s)	56, 320, 1461, 1466
MspR9I	CCNGG	2 cut(s)	124, 1253
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	2 cut(s)	124, 1253
MvnI	CGCG	4 cut(s)	73, 112, 159, 179
MwoI	GCNNNNNNNGC	4 cut(s)	14, 70, 227, 233
NarI	GGCGCC	2 cut(s)	47, 115
NdeII	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
NlaIII	CATG	4 cut(s)	928, 1097, 1138, 1246
NlaIV	GGNNCC	5 cut(s)	48, 116, 237, 291, 806
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	2 cut(s)	748, 930
NspI	RCATGY	1 cut(s)	928
PacI	TTAATTAA	1 cut(s)	1218
PaqCI	CACCTGC	1 cut(s)	1583
PceI	AGGCCT	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	928
PfeI	GAWTC	4 cut(s)	164, 485, 546, 577
PflFI	GACNNNGTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	1559
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	4 cut(s)	139, 268, 337, 460
PluTI	GGCGCC	2 cut(s)	50, 118
PpsI	GAGTC	4 cut(s)	139, 268, 337, 460
PshBI	ATTAAT	2 cut(s)	1179, 1274
Psp6I	CCWGG	2 cut(s)	122, 1251
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	2 cut(s)	122, 1251
PspN4I	GGNNCC	5 cut(s)	48, 116, 237, 291, 806
PspPI	GGNCC	4 cut(s)	413, 868, 1037, 1463
PstNI	CAGNNNCTG	1 cut(s)	1598
PsuI	RGATCY	1 cut(s)	1153
PsyI	GACNNNGTC	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	177
PvuII	CAGCTG	2 cut(s)	221, 1162
RsaI	GTAC	3 cut(s)	531, 1107, 1362
RsaNI	GTAC	3 cut(s)	530, 1106, 1361
RseI	CAYNNNNRTG	2 cut(s)	741, 828
Rsr2I	CGGWCCG	1 cut(s)	1463
RsrII	CGGWCCG	1 cut(s)	1463
SacII	CCGCGG	1 cut(s)	160
SaqAI	TTAA	7 cut(s)	12, 906, 1179, 1214, 1218, 1269, 1274
Sau3AI	GATC	7 cut(s)	174, 344, 617, 775, 862, 1153, 1600
Sau96I	GGNCC	4 cut(s)	413, 868, 1037, 1463
SchI	GAGTC	4 cut(s)	139, 268, 338, 461
ScrFI	CCNGG	2 cut(s)	124, 1253
SduI	GDGCHC	1 cut(s)	664
SexAI	ACCWGGT	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	679, 1321
SfcI	CTRYAG	2 cut(s)	853, 1041
SfoI	GGCGCC	2 cut(s)	48, 116
Sfr303I	CCGCGG	1 cut(s)	160
SgrAI	CRCCGGYG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	3 cut(s)	868, 1037, 1463
SmiMI	CAYNNNNRTG	2 cut(s)	741, 828
SmlI	CTYRAG	2 cut(s)	1231, 1443
SmoI	CTYRAG	2 cut(s)	1231, 1443
Sse9I	AATT	8 cut(s)	301, 901, 1001, 1210, 1215, 1271, 1577, 1621
SseBI	AGGCCT	1 cut(s)	961
SspDI	GGCGCC	2 cut(s)	46, 114
SspMI	CTAG	1 cut(s)	948
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	2 cut(s)	122, 1251
StyI	CCWWGG	3 cut(s)	140, 947, 1450
TaaI	ACNGT	3 cut(s)	872, 893, 1351
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	4 cut(s)	299, 405, 620, 898
TasI	AATT	8 cut(s)	301, 901, 1001, 1210, 1215, 1271, 1577, 1621
TatI	WGTACW	1 cut(s)	1360
TfiI	GAWTC	4 cut(s)	164, 485, 546, 577
Tru1I	TTAA	7 cut(s)	12, 906, 1179, 1214, 1218, 1269, 1274
Tru9I	TTAA	7 cut(s)	12, 906, 1179, 1214, 1218, 1269, 1274
TscAI	CASTG	3 cut(s)	1128, 1506, 1564
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	7 cut(s)	5, 30, 96, 227, 995, 1162, 1549
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	1128, 1506, 1564
Tth111I	GACNNNGTC	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	1559
VpaK11BI	GGWCC	3 cut(s)	868, 1037, 1463
VspI	ATTAAT	2 cut(s)	1179, 1274
XapI	RAATTY	2 cut(s)	301, 901
XceI	RCATGY	1 cut(s)	928
XmaJI	CCTAGG	1 cut(s)	947
XspI	CTAG	1 cut(s)	948
Zsp2I	ATGCAT	2 cut(s)	748, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.