Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008525

Physical Location & Seq

Genomic Coordinates Reverse (-)

5880965 .. 5882638

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0074000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGCCTCTGTCACTTCGCTTCAGCCAACCAACTCCATAATCTCTTCTTCTCGATTCAAAGCTCCAAACCCTAACCCTATTCATCTCTTCCTCAAAACCCAACCTTTCTCCTCCTTCAACCCCACCCCATCCAAACCATTTCGCTCTTTCGCAGTCAACAATCCCAGCATCAATCGCCGCCGCTACGACCGCTCCTCCCAGCCGCAAACCACCAGGCCTCGCTCCAAACCCGTCTACAAGACCCAACCTTTACAAAAGGACAGCAACTACCCCAACCCAAATGAACCCACAAATGAGTCCGACGATCAAAATGTGAGTGACCCATCACGAAAAGATGTGGACTTGATGGGTTTGTGCAAGGAGGGTAAGGTCAAAGAGGCCTTGGAGTATATGGGTCATGGCGTTTCTGCTGATTATGGTGTTTTCTCTATGTTAATGGAGTCCTGTGACGACTTGAAGGTTGGGAGAAAGATTGACCAGTACTTGAAGCTGGCGCCTTTTGGGGGAGATATCGAGTTGAATGTGAAATTGATCGAAATGTATGGGAGGTGTGGGAGTATGAGAGATGCACGCAAGGTGTTTGATAGAATGCCTGAGAGAAATTTGAGTTTGTGGCATTCGATGATCAATGGGTATGCTTTGAATGGGAAAGGGGGTGAGGGGGTGTTGTTGTTTGAGCAAATGAGGAGTTCAGGGTTGAAGCCGGACAAGGAGACTGTAAAGGTGGTTTTGGGGGCGTGTGCTAGTGCGGGAGCTGTGGAAGAAGGGCTAACATACTTTGAATCGATGAAGGATGAGTATGGGATTGTGCCGGAGATCGAGCATTATGTAGGGGTTATTGATGTTCTTGGGAAGTCTGGTCATTTGAATGAAGCTGAGGAGTTCATTGCGAAAATGCCATTTGAGCCTACCGCCGAAGTTTGGGAGGCTCTTAGGAACTTGGCGCGAATTCATGGAGATCTTGAGCTTGAAGATCGCGCTGAGGAATTGTTGGTTAGTGTTGATCCTTCTAAGGCCAATGCTGATAAAATCCCGTTGCCTCTGCGGAAGAAGTACTCAGAGATTAACATGCTAGAGGAGAGGAATATGGTGAGTGAGTATAGGTGTACAGACATATATGGAGAGTCATATGAGCAATCGAAAGGTTTGAGAGGACAGATGAGGGAAGCAGGATATGTGCCGGATACTAGATATGTGCTTCACGACATTGATCAGGAAGCAAAAGAGCAGGCTTTGCAGTATCACAGCGAGCGGTTGGCAATTGCTTATGGTCTGATCAGTACTCCTGCTAGGCAAACTCTAAGGATAATAAAGAACCTTCGAATCTGTGGTGACTGCCACAATGCAATAAAAATCATGTCAAAGATTGTAGGGAGGGAGCTGATTGTTAGGGATAACAAGCGATTCCATCATTTCAAGAATGGGAAATGCTCTTGTGGAGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010150 GO:0014070 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

483

Amino Acids

54.65

Weight (kDa)

6.85

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	203 - 248	1.6e-06	PPR repeat family
DYW_deaminase	PF14432	391 - 483	2.7e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35890 AT4G35890 AT5G66100 AT5G66100
fragaria_vesca	FvH4_1g11260 FvH4_1g11260 FvH4_1g11260
malus_domestica	MD02G1125000.v1.1 MD15G1240700.v1.1
prunus_persica	Prupe.7G173400_v2.0.a1
pyrus_communis	pycom02g09760 pycom15g21230
rosa_chinensis	RchiOBHm_Chr2g0098711
rosa_laevigata	RLG00000016823
rosa_multiflora	Rmu_sc0002776.1_g000023
rosa_roxburghii	Rroxscaffold_2G00143790
rosa_rugosa	Rorug02G0074000 Rorug02G0074100
rosa_samantha	Rh2AG122000 Rh2BG125500 Rh2CG126600 Rh2DG127600
rosa_wichuraiana	Rw0G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AccBSI	CCGCTC	2 cut(s)	192, 1252
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	2 cut(s)	946, 978
AciI	CCGC	8 cut(s)	178, 181, 190, 203, 749, 912, 1045, 1252
AclWI	GGATC	1 cut(s)	998
AcsI	RAATTY	2 cut(s)	601, 948
AcuI	CTGAAG	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	4 cut(s)	482, 1055, 1108, 1282
AfiI	CCNNNNNNNGG	2 cut(s)	503, 921
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	6 cut(s)	62, 490, 755, 875, 967, 1381
AluI	AGCT	6 cut(s)	62, 490, 755, 875, 967, 1381
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	998
AoxI	GGCC	4 cut(s)	3, 215, 378, 1014
ApoI	RAATTY	2 cut(s)	601, 948
AspLEI	GCGC	3 cut(s)	496, 946, 980
AsuHPI	GGTGA	3 cut(s)	668, 1102, 1343
AsuII	TTCGAA	1 cut(s)	1321
BanI	GGYRCC	1 cut(s)	493
BbvCI	CCTCAGC	2 cut(s)	876, 981
BccI	CCATC	4 cut(s)	136, 331, 340, 1416
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	1177
BclI	TGATCA	3 cut(s)	624, 1210, 1275
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	4 cut(s)	744, 1073, 1188, 1290
BfoI	RGCGCY	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	1177
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	3 cut(s)	178, 181, 203
BlsI	GCNGC	3 cut(s)	179, 182, 204
BmcAI	AGTACT	3 cut(s)	482, 1055, 1282
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	177, 556
Bpu10I	CCTNAGC	2 cut(s)	876, 981
Bpu14I	TTCGAA	1 cut(s)	1321
BpuEI	CTTGAG	1 cut(s)	983
Bsa29I	ATCGAT	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 179, 206, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 921
Bse1I	ACTGG	2 cut(s)	478, 1451
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	128, 799
BseLI	CCNNNNNNNGG	2 cut(s)	503, 921
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	4 cut(s)	585, 867, 972, 1071
BseNI	ACTGG	2 cut(s)	478, 1451
BseRI	GAGGAG	5 cut(s)	100, 184, 700, 893, 1091
BseYI	CCCAGC	2 cut(s)	164, 198
Bsh1236I	CGCG	2 cut(s)	946, 978
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	5, 217, 380, 1016
BshNI	GGYRCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	785
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	704, 812, 1181
BslI	CCNNNNNNNGG	2 cut(s)	503, 921
BsmAI	GTCTC	1 cut(s)	707
BsmI	GAATGC	2 cut(s)	594, 616
BsnI	GGCC	4 cut(s)	5, 217, 380, 1016
Bsp119I	TTCGAA	1 cut(s)	1321
Bsp1407I	TGTACA	1 cut(s)	1106
Bsp143I	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
BspACI	CCGC	8 cut(s)	178, 181, 190, 203, 749, 912, 1045, 1252
BspANI	GGCC	4 cut(s)	5, 217, 380, 1016
BspCNI	CTCAG	4 cut(s)	586, 868, 973, 1070
BspDI	ATCGAT	1 cut(s)	785
BspFNI	CGCG	2 cut(s)	946, 978
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	998
BspT104I	TTCGAA	1 cut(s)	1321
BspT107I	GGYRCC	1 cut(s)	493
BsrBI	CCGCTC	2 cut(s)	192, 1252
BsrDI	GCAATG	1 cut(s)	885
BsrGI	TGTACA	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	478, 1451
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	718
Bst6I	CTCTTC	2 cut(s)	49, 92
BstACI	GRCGYC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	1234
BstAUI	TGTACA	1 cut(s)	1106
BstBI	TTCGAA	1 cut(s)	1321
BstC8I	GCNNGC	4 cut(s)	492, 571, 1230, 1250
BstDEI	CTNAG	7 cut(s)	594, 876, 932, 981, 1011, 1057, 1301
BstF5I	GGATG	2 cut(s)	128, 799
BstFNI	CGCG	2 cut(s)	946, 978
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	496, 946, 980
BstKTI	GATC	9 cut(s)	307, 534, 627, 819, 961, 976, 1006, 1213, 1278
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 189, 904, 1234
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	1072
BstSCI	CCNGG	1 cut(s)	212
BstUI	CGCG	2 cut(s)	946, 978
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
Bsu15I	ATCGAT	1 cut(s)	785
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	4 cut(s)	5, 217, 380, 1016
BsuTUI	ATCGAT	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	128, 799
Cac8I	GCNNGC	4 cut(s)	492, 571, 1230, 1250
CfoI	GCGC	3 cut(s)	496, 946, 980
ClaI	ATCGAT	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	481, 1054, 1107, 1281
CviAII	CATG	4 cut(s)	398, 953, 1069, 1357
CviQI	GTAC	4 cut(s)	481, 1054, 1107, 1281
DdeI	CTNAG	7 cut(s)	594, 876, 932, 981, 1011, 1057, 1301
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	9 cut(s)	306, 533, 626, 818, 960, 975, 1005, 1212, 1277
DpnII	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
Eam1104I	CTCTTC	2 cut(s)	49, 92
EarI	CTCTTC	2 cut(s)	49, 92
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	2 cut(s)	217, 380
Eco32I	GATATC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	381
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	401, 956, 1072, 1360
FatI	CATG	4 cut(s)	397, 952, 1068, 1356
FauI	CCCGC	1 cut(s)	742
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	3 cut(s)	624, 1210, 1275
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	178, 181, 203
FokI	GGATG	2 cut(s)	115, 806
Fsp4HI	GCNGC	3 cut(s)	178, 181, 203
FspBI	CTAG	4 cut(s)	744, 1073, 1188, 1290
GlaI	GCGC	3 cut(s)	495, 945, 979
GluI	GCNGC	3 cut(s)	178, 181, 203
GsaI	CCCAGC	2 cut(s)	168, 202
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	5, 217, 380, 1016
HapII	CCGG	3 cut(s)	704, 812, 1181
HhaI	GCGC	3 cut(s)	496, 946, 980
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	401, 956, 1072, 1360
Hin6I	GCGC	3 cut(s)	494, 944, 978
HinP1I	GCGC	3 cut(s)	494, 944, 978
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	7 cut(s)	54, 296, 440, 782, 1124, 1323, 1404
HpaII	CCGG	3 cut(s)	704, 812, 1181
HphI	GGTGA	3 cut(s)	668, 1102, 1343
Hpy166II	GTNNAC	4 cut(s)	157, 235, 340, 1107
Hpy188I	TCNGA	3 cut(s)	301, 1060, 1275
Hpy188III	TCNNGA	6 cut(s)	51, 327, 962, 1202, 1214, 1417
Hpy8I	GTNNAC	4 cut(s)	157, 235, 340, 1107
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	6 cut(s)	124, 451, 758, 784, 1017, 1328
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4V	TGCA	4 cut(s)	357, 569, 1237, 1346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 189, 904, 1234
HpyF3I	CTNAG	7 cut(s)	594, 876, 932, 981, 1011, 1057, 1301
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	401, 956, 1072, 1360
HspAI	GCGC	3 cut(s)	494, 944, 978
KasI	GGCGCC	1 cut(s)	493
Ksp22I	TGATCA	3 cut(s)	624, 1210, 1275
Kzo9I	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
LmnI	GCTCC	5 cut(s)	67, 197, 227, 752, 1378
LweI	GCATC	2 cut(s)	177, 556
MaeI	CTAG	4 cut(s)	744, 1073, 1188, 1290
MaeIII	GTNAC	4 cut(s)	10, 317, 446, 1331
MalI	GATC	9 cut(s)	306, 533, 626, 818, 960, 975, 1005, 1212, 1277
MbiI	CCGCTC	2 cut(s)	192, 1252
MboI	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
MboII	GAAGA	6 cut(s)	36, 39, 79, 773, 983, 1060
MfeI	CAATTG	1 cut(s)	1260
MflI	RGATCY	1 cut(s)	958
MluCI	AATT	5 cut(s)	527, 601, 948, 986, 1260
Mly113I	GGCGCC	1 cut(s)	494
MlyI	GAGTC	3 cut(s)	305, 449, 1133
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	2 cut(s)	434, 1065
MslI	CAYNNNNRTG	1 cut(s)	867
MspI	CCGG	3 cut(s)	704, 812, 1181
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	1260
Mva1269I	GAATGC	2 cut(s)	594, 616
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	2 cut(s)	946, 978
MwoI	GCNNNNNNNGC	4 cut(s)	174, 189, 904, 1234
NarI	GGCGCC	1 cut(s)	494
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
NlaIII	CATG	4 cut(s)	401, 956, 1072, 1360
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	4 cut(s)	10, 317, 446, 1331
NspI	RCATGY	1 cut(s)	1072
NspV	TTCGAA	1 cut(s)	1321
PceI	AGGCCT	2 cut(s)	217, 380
PctI	GAATGC	2 cut(s)	594, 616
PfeI	GAWTC	4 cut(s)	54, 782, 1323, 1404
PkrI	GCNGC	3 cut(s)	179, 182, 204
PleI	GAGTC	3 cut(s)	304, 448, 1132
PluTI	GGCGCC	1 cut(s)	497
PpsI	GAGTC	3 cut(s)	304, 448, 1132
Psp6I	CCWGG	1 cut(s)	212
PspFI	CCCAGC	2 cut(s)	164, 198
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	4 cut(s)	482, 1055, 1108, 1282
RsaNI	GTAC	4 cut(s)	481, 1054, 1107, 1281
RseI	CAYNNNNRTG	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	434, 1065
SatI	GCNGC	3 cut(s)	178, 181, 203
Sau3AI	GATC	9 cut(s)	304, 531, 624, 816, 958, 973, 1003, 1210, 1275
ScaI	AGTACT	3 cut(s)	482, 1055, 1282
SchI	GAGTC	3 cut(s)	305, 449, 1133
ScrFI	CCNGG	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	177, 556
SfoI	GGCGCC	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	1321
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	5 cut(s)	527, 601, 948, 986, 1260
SseBI	AGGCCT	2 cut(s)	217, 380
SsiI	CCGC	8 cut(s)	178, 181, 190, 203, 749, 912, 1045, 1252
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	4 cut(s)	744, 1073, 1188, 1290
StuI	AGGCCT	2 cut(s)	217, 380
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	718
TaqI	TCGA	8 cut(s)	52, 513, 534, 620, 785, 819, 1139, 1321
TasI	AATT	5 cut(s)	527, 601, 948, 986, 1260
TatI	WGTACW	4 cut(s)	480, 1053, 1106, 1280
TauI	GCSGC	3 cut(s)	180, 183, 205
TfiI	GAWTC	4 cut(s)	54, 782, 1323, 1404
Tru1I	TTAA	2 cut(s)	434, 1065
Tru9I	TTAA	2 cut(s)	434, 1065
TseFI	GTSAC	4 cut(s)	10, 317, 446, 1331
Tsp45I	GTSAC	4 cut(s)	10, 317, 446, 1331
TspDTI	ATGAA	6 cut(s)	71, 297, 803, 874, 885, 941
XapI	RAATTY	2 cut(s)	601, 948
XceI	RCATGY	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	4 cut(s)	744, 1073, 1188, 1290
ZrmI	AGTACT	3 cut(s)	482, 1055, 1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.