AT5G66100

La-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26427186 .. 26430108
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66100.1

Sequence Viewer

Length: 1362 bp
ATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATCTCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTTGTTACCTTCTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTTCTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGATAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCCTGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCATCAAGTCTCCCTCTTTGGATGCTTCCAAACCTTTTCCTGATGGATCATCGTCATCAATACCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATGCAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGAAACCTTTTAGACGGAATAACAACACATCATCTTCCAGTACCAGTAGTAACGTCTCCAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGCCAAAGGGGTGGTGGCTCTTTTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGTGGGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTTTCTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATGATTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATGGCAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCATGTCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAACCCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAATATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGATGAAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAATAACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAAACATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCCGGTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTGAGAGCATGACTCTATCAGAGAGGAGCAGAGAGGGAGTGTAA

Protein Analysis

453

Amino Acids

49.07

Weight (kDa)

8.01

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 339 - 395 4.3e-22 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 843
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 1 cut(s) 70
AciI CCGC 9 cut(s) 27, 179, 291, 398, 726, 773, 800, 1139, 1283
AclWI GGATC 4 cut(s) 146, 388, 932, 1086
AcsI RAATTY 2 cut(s) 625, 1200
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 538, 1007
AfeI AGCGCT 1 cut(s) 1045
AgsI TTSAA 2 cut(s) 971, 1266
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 4 cut(s) 95, 144, 299, 405
AluBI AGCT 3 cut(s) 261, 660, 1280
AluI AGCT 3 cut(s) 261, 660, 1280
Alw26I GTCTC 6 cut(s) 178, 348, 556, 750, 1126, 1317
AlwI GGATC 4 cut(s) 146, 388, 932, 1086
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 445
Aor51HI AGCGCT 1 cut(s) 1045
AoxI GGCC 4 cut(s) 274, 302, 815, 880
ApeKI GCWGC 5 cut(s) 560, 657, 854, 1121, 1280
ApoI RAATTY 2 cut(s) 625, 1200
Asp700I GAANNNNTTC 1 cut(s) 681
AspLEI GCGC 7 cut(s) 166, 290, 565, 702, 844, 859, 1046
AspS9I GGNCC 6 cut(s) 275, 815, 881, 956, 1269, 1274
AsuHPI GGTGA 3 cut(s) 677, 728, 1220
AsuNHI GCTAGC 1 cut(s) 1289
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 3 cut(s) 956, 1269, 1274
BanI GGYRCC 1 cut(s) 287
BauI CACGAG 2 cut(s) 669, 1254
BbsI GAAGAC 1 cut(s) 674
BbvI GCAGC 5 cut(s) 547, 669, 866, 1133, 1267
BccI CCATC 7 cut(s) 344, 371, 805, 829, 937, 937, 1007
BceAI ACGGC 2 cut(s) 30, 97
BciT130I CCWGG 4 cut(s) 97, 146, 301, 407
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 6 cut(s) 178, 348, 556, 750, 1126, 1317
BfaI CTAG 1 cut(s) 1290
BfmI CTRYAG 1 cut(s) 745
BfoI RGCGCY 4 cut(s) 167, 291, 860, 1047
BisI GCNGC 8 cut(s) 27, 291, 561, 658, 727, 855, 1122, 1281
BlsI GCNGC 8 cut(s) 28, 292, 562, 659, 728, 856, 1123, 1282
Bme1390I CCNGG 4 cut(s) 97, 146, 301, 407
Bme18I GGWCC 3 cut(s) 956, 1269, 1274
BmeT110I CYCGRG 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 6 cut(s) 275, 815, 881, 956, 1269, 1274
BmiI GGNNCC 5 cut(s) 289, 816, 883, 958, 1104
BmrFI CCNGG 4 cut(s) 97, 146, 301, 407
BmsI GCATC 4 cut(s) 47, 346, 795, 985
BmtI GCTAGC 1 cut(s) 1293
BpiI GAAGAC 1 cut(s) 674
BplI GAGNNNNNCTC 2 cut(s) 1315, 1347
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 1 cut(s) 1055
BsaBI GATNNNNATC 1 cut(s) 585
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 4 cut(s) 95, 144, 405, 688
BsaWI WCCGGW 2 cut(s) 185, 1271
Bse1I ACTGG 4 cut(s) 534, 540, 834, 1311
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 4 cut(s) 97, 146, 301, 407
BseDI CCNNGG 4 cut(s) 95, 144, 405, 688
BseGI GGATG 5 cut(s) 124, 361, 795, 925, 1155
BseJI GATNNNNATC 1 cut(s) 585
BseMII CTCAG 4 cut(s) 174, 653, 1046, 1169
BseNI ACTGG 4 cut(s) 534, 540, 834, 1311
BseRI GAGGAG 4 cut(s) 219, 253, 1242, 1357
BseXI GCAGC 5 cut(s) 547, 669, 866, 1133, 1267
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 276, 304, 817, 882
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 186, 1272
BslFI GGGAC 1 cut(s) 1250
BsmAI GTCTC 6 cut(s) 178, 348, 556, 750, 1126, 1317
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 1250
BsmI GAATGC 1 cut(s) 1124
BsnI GGCC 4 cut(s) 276, 304, 817, 882
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 1005
Bsp143I GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
Bsp19I CCATGG 1 cut(s) 688
Bsp68I TCGCGA 1 cut(s) 70
BspACI CCGC 9 cut(s) 27, 179, 291, 398, 726, 773, 800, 1139, 1283
BspANI GGCC 4 cut(s) 276, 304, 817, 882
BspCNI CTCAG 4 cut(s) 173, 652, 1047, 1170
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 5 cut(s) 289, 816, 883, 958, 1104
BspOI GCTAGC 1 cut(s) 1293
BspPI GGATC 4 cut(s) 146, 388, 932, 1086
BspQI GCTCTTC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 4 cut(s) 534, 540, 834, 1311
BssECI CCNNGG 4 cut(s) 95, 144, 405, 688
BssMI GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 2 cut(s) 669, 1254
BssT1I CCWWGG 1 cut(s) 688
Bst2BI CACGAG 2 cut(s) 669, 1254
Bst2UI CCWGG 4 cut(s) 97, 146, 301, 407
Bst4CI ACNGT 2 cut(s) 476, 740
Bst6I CTCTTC 2 cut(s) 202, 334
BstACI GRCGYC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 1005
BstC8I GCNNGC 4 cut(s) 306, 325, 442, 1291
BstDEI CTNAG 4 cut(s) 160, 639, 1055, 1178
BstDSI CCRYGG 1 cut(s) 688
BstENI CCTNNNNNAGG 2 cut(s) 143, 864
BstF5I GGATG 5 cut(s) 124, 361, 795, 925, 1155
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 4 cut(s) 167, 291, 860, 1047
BstHHI GCGC 7 cut(s) 166, 290, 565, 702, 844, 859, 1046
BstKTI GATC 7 cut(s) 74, 124, 154, 383, 583, 940, 1081
BstMAI GTCTC 6 cut(s) 178, 348, 556, 750, 1126, 1317
BstMBI GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
BstMWI GCNNNNNNNGC 9 cut(s) 14, 23, 35, 657, 723, 814, 839, 1258, 1286
BstNI CCWGG 4 cut(s) 97, 146, 301, 407
BstNSI RCATGY 3 cut(s) 247, 763, 914
BstSCI CCNGG 4 cut(s) 95, 144, 299, 405
BstSFI CTRYAG 1 cut(s) 745
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 5 cut(s) 547, 669, 866, 1133, 1267
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 937
BsuRI GGCC 4 cut(s) 276, 304, 817, 882
BtgI CCRYGG 1 cut(s) 688
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 5 cut(s) 124, 361, 795, 925, 1155
BtsIMutI CAGTG 3 cut(s) 481, 1175, 1304
BtuMI TCGCGA 1 cut(s) 70
Cac8I GCNNGC 4 cut(s) 306, 325, 442, 1291
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 7 cut(s) 166, 290, 565, 702, 844, 859, 1046
Cfr13I GGNCC 6 cut(s) 275, 815, 881, 956, 1269, 1274
Csp6I GTAC 2 cut(s) 537, 1006
CviAII CATG 9 cut(s) 119, 244, 283, 689, 713, 760, 911, 976, 1327
CviQI GTAC 2 cut(s) 537, 1006
DdeI CTNAG 4 cut(s) 160, 639, 1055, 1178
DinI GGCGCC 1 cut(s) 289
DpnI GATC 7 cut(s) 73, 123, 153, 382, 582, 939, 1080
DpnII GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 2 cut(s) 202, 334
EarI CTCTTC 2 cut(s) 202, 334
Eco130I CCWWGG 1 cut(s) 688
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 3 cut(s) 956, 1269, 1274
Eco47III AGCGCT 1 cut(s) 1045
Eco88I CYCGRG 1 cut(s) 445
EcoNI CCTNNNNNAGG 2 cut(s) 143, 864
EcoRII CCWGG 4 cut(s) 95, 144, 299, 405
EcoT14I CCWWGG 1 cut(s) 688
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 688
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 9 cut(s) 122, 247, 286, 692, 716, 763, 914, 979, 1330
FaqI GGGAC 1 cut(s) 1250
FatI CATG 9 cut(s) 118, 243, 282, 688, 712, 759, 910, 975, 1326
FauI CCCGC 2 cut(s) 186, 1276
FauNDI CATATG 1 cut(s) 874
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 8 cut(s) 27, 291, 561, 658, 727, 855, 1122, 1281
FokI GGATG 5 cut(s) 111, 368, 802, 912, 1142
Fsp4HI GCNGC 8 cut(s) 27, 291, 561, 658, 727, 855, 1122, 1281
FspBI CTAG 1 cut(s) 1290
FspI TGCGCA 1 cut(s) 843
GlaI GCGC 7 cut(s) 165, 289, 564, 701, 843, 858, 1045
GluI GCNGC 8 cut(s) 27, 291, 561, 658, 727, 855, 1122, 1281
GsuI CTGGAG 1 cut(s) 918
HaeII RGCGCY 4 cut(s) 167, 291, 860, 1047
HaeIII GGCC 4 cut(s) 276, 304, 817, 882
HapII CCGG 2 cut(s) 186, 1272
HhaI GCGC 7 cut(s) 166, 290, 565, 702, 844, 859, 1046
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 9 cut(s) 122, 247, 286, 692, 716, 763, 914, 979, 1330
Hin6I GCGC 7 cut(s) 164, 288, 563, 700, 842, 857, 1044
HinP1I GCGC 7 cut(s) 164, 288, 563, 700, 842, 857, 1044
HinfI GANTC 8 cut(s) 56, 86, 113, 130, 296, 586, 646, 1330
HpaII CCGG 2 cut(s) 186, 1272
HphI GGTGA 3 cut(s) 677, 728, 1220
Hpy188III TCNNGA 7 cut(s) 69, 238, 374, 935, 1129, 1159, 1256
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 8 cut(s) 117, 166, 177, 258, 671, 970, 1088, 1272
HpyCH4III ACNGT 2 cut(s) 476, 740
HpyCH4IV ACGT 2 cut(s) 76, 549
HpyCH4V TGCA 5 cut(s) 38, 440, 763, 769, 905
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 23, 35, 657, 723, 814, 839, 1258, 1286
HpyF3I CTNAG 4 cut(s) 160, 639, 1055, 1178
HpySE526I ACGT 2 cut(s) 76, 549
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 9 cut(s) 122, 247, 286, 692, 716, 763, 914, 979, 1330
HspAI GCGC 7 cut(s) 164, 288, 563, 700, 842, 857, 1044
KasI GGCGCC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 266, 1344
Lsp1109I GCAGC 5 cut(s) 547, 669, 866, 1133, 1267
LweI GCATC 4 cut(s) 47, 346, 795, 985
MaeI CTAG 1 cut(s) 1290
MaeII ACGT 2 cut(s) 76, 549
MaeIII GTNAC 4 cut(s) 77, 102, 545, 740
MalI GATC 7 cut(s) 73, 123, 153, 382, 582, 939, 1080
MboI GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
MboII GAAGA 6 cut(s) 189, 243, 321, 324, 522, 674
MflI RGATCY 1 cut(s) 937
MluCI AATT 8 cut(s) 31, 625, 634, 703, 863, 988, 1200, 1317
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 2 cut(s) 124, 1324
MmeI TCCRAC 4 cut(s) 152, 225, 441, 934
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 3 cut(s) 483, 569, 1217
MspA1I CMGCKG 1 cut(s) 1280
MspI CCGG 2 cut(s) 186, 1272
MspR9I CCNGG 4 cut(s) 97, 146, 301, 407
Mva1269I GAATGC 1 cut(s) 1124
MvaI CCWGG 4 cut(s) 97, 146, 301, 407
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 9 cut(s) 14, 23, 35, 657, 723, 814, 839, 1258, 1286
NarI GGCGCC 1 cut(s) 288
NcoI CCATGG 1 cut(s) 688
NdeI CATATG 1 cut(s) 874
NdeII GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
NheI GCTAGC 1 cut(s) 1289
NlaIII CATG 9 cut(s) 122, 247, 286, 692, 716, 763, 914, 979, 1330
NlaIV GGNNCC 5 cut(s) 289, 816, 883, 958, 1104
NmuCI GTSAC 1 cut(s) 77
NruI TCGCGA 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 843
NspI RCATGY 3 cut(s) 247, 763, 914
PaeR7I CTCGAG 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 334
PctI GAATGC 1 cut(s) 1124
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 6 cut(s) 56, 86, 113, 296, 586, 646
PkrI GCNGC 8 cut(s) 28, 292, 562, 659, 728, 856, 1123, 1282
PleI GAGTC 2 cut(s) 124, 1324
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 2 cut(s) 124, 1324
Psp6I CCWGG 4 cut(s) 95, 144, 299, 405
PspGI CCWGG 4 cut(s) 95, 144, 299, 405
PspN4I GGNNCC 5 cut(s) 289, 816, 883, 958, 1104
PspPI GGNCC 6 cut(s) 275, 815, 881, 956, 1269, 1274
PspXI VCTCGAGB 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 1280
RruI TCGCGA 1 cut(s) 70
RsaI GTAC 2 cut(s) 538, 1007
RsaNI GTAC 2 cut(s) 537, 1006
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 3 cut(s) 483, 569, 1217
SatI GCNGC 8 cut(s) 27, 291, 561, 658, 727, 855, 1122, 1281
Sau3AI GATC 7 cut(s) 71, 121, 151, 380, 580, 937, 1078
Sau96I GGNCC 6 cut(s) 275, 815, 881, 956, 1269, 1274
SchI GAGTC 2 cut(s) 124, 1324
ScrFI CCNGG 4 cut(s) 97, 146, 301, 407
SfaNI GCATC 4 cut(s) 47, 346, 795, 985
SfcI CTRYAG 1 cut(s) 745
SfoI GGCGCC 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 3 cut(s) 956, 1269, 1274
SlaI CTCGAG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 8 cut(s) 31, 625, 634, 703, 863, 988, 1200, 1317
SsiI CCGC 9 cut(s) 27, 179, 291, 398, 726, 773, 800, 1139, 1283
SspDI GGCGCC 1 cut(s) 287
SspI AATATT 1 cut(s) 1034
SspMI CTAG 1 cut(s) 1290
StyD4I CCNGG 4 cut(s) 95, 144, 299, 405
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 476, 740
TaiI ACGT 2 cut(s) 79, 552
TaqI TCGA 1 cut(s) 446
TaqII GACCGA 1 cut(s) 160
TasI AATT 8 cut(s) 31, 625, 634, 703, 863, 988, 1200, 1317
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 3 cut(s) 29, 293, 729
TfiI GAWTC 6 cut(s) 56, 86, 113, 296, 586, 646
Tru1I TTAA 3 cut(s) 483, 569, 1217
Tru9I TTAA 3 cut(s) 483, 569, 1217
TscAI CASTG 3 cut(s) 481, 1182, 1311
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 5 cut(s) 560, 657, 854, 1121, 1280
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 861, 1080, 1100, 1107
TspGWI ACGGA 2 cut(s) 526, 620
TspRI CASTG 3 cut(s) 481, 1182, 1311
VpaK11BI GGWCC 3 cut(s) 956, 1269, 1274
XagI CCTNNNNNAGG 2 cut(s) 143, 864
XapI RAATTY 2 cut(s) 625, 1200
XceI RCATGY 3 cut(s) 247, 763, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XhoI CTCGAG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 1 cut(s) 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.