AT4G36470

S-adenosyl-L-methionine carboxyl methyltransferase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016697
Physical Location & Seq
Reverse (-)
17214766 .. 17216530
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36470.1

Sequence Viewer

Length: 1116 bp
ATGGATAAGAAGGATATGGAGAGAGAGTTTTACATGACAGGAGGAGATGGAAAAACTAGTTATGCCAGAAACTCTTCCCTCCAGAAGAAAGCATCTGATACGGCAAAGCACATAACACTAGAGACACTTCAACAACTCTACAAAGAGACAAGACCAAAGAGTTTAGGAATAGCTGATCTAGGATGTTCTTCAGGACCAAACACTCTCTCCACCATTACAGACTTCATCAAAACCGTCCAAGTTGCTCACCACCGCGAGATCCCAATCCAGCCCTTACCAGAATTCAGCATCTTCCTTAACGATCTCCCTGGAAATGATTTCAACTTCATATTCAAGTCATTACCAGACTTTCACATAGAGCTCAAGAGAGACAACAACAATGGTGATTGCCCTTCAGTTTTCATTGCAGCTTACCCTGGGTCATTTTATGGAAGACTCTTCCCTGAAAACACCATCCACTTTGTCTATGCCTCTCATAGCTTACACTGGCTTTCCAAGGTTCCTACAGCTTTATATGACGAGCAAGGCAAGTCCATAAACAAAGGTTGTGTTAGTATCTGCTCCTTAAGCTCTGAAGCTGTTTCCAAAGCTTACTGCAGTCAATTCAAGGAAGATTTCTCCATTTTCCTCCGGTGTAGATCAAAAGAGATGGTTTCTGCAGGAAGAATGGTGCTTATTATACTCGGAAGAGAAGGTCCTGATCATGTCGATAGAGGAAACTCTTTCTTTTGGGAACTTCTCTCAAGATCCATAGCAGATCTTGTTGCACAGGGAGAGACTGAGGAAGAGAAGCTTGATTCTTACGATATGCACTTCTACGCTCCGAGTGCTGATGAGATAGAAGGTGAAGTGGACAAAGAAGGGTCTTTTGAATTAGAGAGGTTAGAGATGTTAGAAGTGAAGAAGGACAAAGGGAATACCGAGGGTGATATAAGTTATGGTAAGGCGGTTGCAAAGACGGTAAGAGCAGTTCAAGAATCAATGCTTGTTCAACACTTTGGGGAAAAGATTCTTGACAAGCTCTTTGATACATATTGTAGAATGGTTGACGATGAGTTAGCTAAGGAAGACATAAGACCCATCACATTTGTTGTTGTCCTAAGAAAGAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

371

Amino Acids

41.98

Weight (kDa)

5.41

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 42 - 369 2.8e-120 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36470
fragaria_vesca FvH4_1g12770
malus_domestica MD15G1256500.v1.1
prunus_persica Prupe.7G158400_v2.0.a1 Prupe.7G158400_v2.0.a1
pyrus_communis pycom02g11320 pycom15g22440
rosa_chinensis RchiOBHm_Chr2g0100891
rosa_laevigata RLG00000017021
rosa_multiflora Rmu_sc0001659.1_g000045
rosa_roxburghii Rroxscaffold_2G00141760
rosa_rugosa Rorug02G0093400
rosa_samantha Rh2BG146100
rosa_wichuraiana Rw2G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 253, 947
AclWI GGATC 2 cut(s) 253, 741
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 3 cut(s) 174, 378, 594
AflII CTTAAG 1 cut(s) 565
AgsI TTSAA 7 cut(s) 131, 322, 334, 607, 872, 974, 992
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 2 cut(s) 307, 415
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 4 cut(s) 116, 140, 363, 770
AlwI GGATC 2 cut(s) 253, 741
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 1007, 1039
Asp700I GAANNNNTTC 2 cut(s) 73, 1008
AspS9I GGNCC 2 cut(s) 194, 695
AsuHPI GGTGA 4 cut(s) 239, 395, 857, 938
AvaII GGWCC 2 cut(s) 194, 695
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 439, 1074
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 419
BccI CCATC 4 cut(s) 41, 461, 643, 1088
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 2 cut(s) 309, 417
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 4 cut(s) 116, 140, 363, 770
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 3 cut(s) 57, 119, 179
BfmI CTRYAG 3 cut(s) 504, 595, 657
BfrI CTTAAG 1 cut(s) 565
BglII AGATCT 1 cut(s) 757
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 309, 417
Bme18I GGWCC 2 cut(s) 194, 695
BmgT120I GGNCC 2 cut(s) 194, 695
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 2 cut(s) 309, 417
BmsI GCATC 2 cut(s) 101, 297
BpiI GAAGAC 2 cut(s) 439, 1074
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 347, 727
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 5 cut(s) 307, 415, 416, 495, 921
BsaWI WCCGGW 1 cut(s) 630
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 191, 221
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 2 cut(s) 309, 417
BseDI CCNNGG 5 cut(s) 307, 415, 416, 495, 921
BseGI GGATG 2 cut(s) 188, 453
BseJI GATNNNNATC 1 cut(s) 263
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 1 cut(s) 631
BsmAI GTCTC 4 cut(s) 116, 140, 363, 770
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
BspACI CCGC 2 cut(s) 253, 947
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 2 cut(s) 599, 661
BspPI GGATC 2 cut(s) 253, 741
BspTI CTTAAG 1 cut(s) 565
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 5 cut(s) 307, 415, 416, 495, 921
BssMI GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 309, 417
Bst4CI ACNGT 2 cut(s) 235, 961
Bst6I CTCTTC 4 cut(s) 79, 443, 682, 780
BstAFI CTTAAG 1 cut(s) 565
BstDEI CTNAG 3 cut(s) 780, 1062, 1100
BstF5I GGATG 2 cut(s) 188, 453
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 7 cut(s) 178, 261, 304, 641, 703, 749, 760
BstMAI GTCTC 4 cut(s) 116, 140, 363, 770
BstMBI GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
BstMWI GCNNNNNNNGC 2 cut(s) 567, 827
BstNI CCWGG 2 cut(s) 309, 417
BstSCI CCNGG 2 cut(s) 307, 415
BstSFI CTRYAG 3 cut(s) 504, 595, 657
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 2 cut(s) 439, 1074
BstX2I RGATCY 3 cut(s) 258, 746, 757
BstYI RGATCY 3 cut(s) 258, 746, 757
BtsCI GGATG 2 cut(s) 188, 453
BtsIMutI CAGTG 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 194, 695
CviAII CATG 2 cut(s) 34, 704
DdeI CTNAG 3 cut(s) 780, 1062, 1100
DpnI GATC 7 cut(s) 177, 260, 303, 640, 702, 748, 759
DpnII GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
Eam1104I CTCTTC 4 cut(s) 79, 443, 682, 780
EarI CTCTTC 4 cut(s) 79, 443, 682, 780
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 194, 695
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 3 cut(s) 174, 378, 594
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 307, 415
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 2 cut(s) 37, 707
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FatI CATG 2 cut(s) 33, 703
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 195, 440
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 3 cut(s) 57, 119, 179
GluI GCNGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 65
HapII CCGG 1 cut(s) 631
Hin1II CATG 2 cut(s) 37, 707
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 2 cut(s) 588, 791
HinfI GANTC 4 cut(s) 435, 797, 977, 1009
HpaII CCGG 1 cut(s) 631
HphI GGTGA 4 cut(s) 239, 395, 857, 938
Hpy166II GTNNAC 2 cut(s) 853, 1048
Hpy188I TCNGA 5 cut(s) 97, 574, 686, 825, 1115
Hpy188III TCNNGA 7 cut(s) 82, 192, 364, 698, 744, 974, 1013
Hpy8I GTNNAC 2 cut(s) 853, 1048
HpyAV CCTTC 6 cut(s) 4, 402, 686, 836, 854, 898
HpyCH4III ACNGT 2 cut(s) 235, 961
HpyCH4V TGCA 6 cut(s) 407, 597, 659, 767, 811, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 827
HpyF3I CTNAG 3 cut(s) 780, 1062, 1100
Hsp92II CATG 2 cut(s) 37, 707
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
LmnI GCTCC 2 cut(s) 566, 826
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 2 cut(s) 101, 297
MaeI CTAG 3 cut(s) 57, 119, 179
MalI GATC 7 cut(s) 177, 260, 303, 640, 702, 748, 759
MboI GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
MflI RGATCY 3 cut(s) 258, 746, 757
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 281, 602, 872
MlyI GAGTC 1 cut(s) 429
MnlI CCTC 8 cut(s) 35, 89, 481, 638, 707, 775, 873, 916
MroXI GAANNNNTTC 2 cut(s) 73, 1008
MseI TTAA 2 cut(s) 297, 566
MspCI CTTAAG 1 cut(s) 565
MspI CCGG 1 cut(s) 631
MspR9I CCNGG 2 cut(s) 309, 417
MvaI CCWGG 2 cut(s) 309, 417
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 567, 827
NdeII GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
NlaIII CATG 2 cut(s) 37, 707
NlaIV GGNNCC 1 cut(s) 501
PasI CCCWGGG 1 cut(s) 416
PdmI GAANNNNTTC 2 cut(s) 73, 1008
PfeI GAWTC 3 cut(s) 797, 977, 1009
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PpuMI RGGWCCY 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 307, 415
PspGI CCWGG 2 cut(s) 307, 415
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 2 cut(s) 194, 695
PspPPI RGGWCCY 1 cut(s) 695
PsrI GAACNNNNNNTAC 2 cut(s) 954, 986
PstI CTGCAG 2 cut(s) 599, 661
PsuI RGATCY 3 cut(s) 258, 746, 757
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 297, 566
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 7 cut(s) 175, 258, 301, 638, 700, 746, 757
Sau96I GGNCC 2 cut(s) 194, 695
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 2 cut(s) 309, 417
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 101, 297
SfcI CTRYAG 3 cut(s) 504, 595, 657
SinI GGWCC 2 cut(s) 194, 695
SmlI CTYRAG 3 cut(s) 362, 565, 742
SmoI CTYRAG 3 cut(s) 362, 565, 742
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 3 cut(s) 281, 602, 872
SsiI CCGC 2 cut(s) 253, 947
SspMI CTAG 3 cut(s) 57, 119, 179
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 307, 415
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 235, 961
TaqI TCGA 1 cut(s) 708
TasI AATT 3 cut(s) 281, 602, 872
TfiI GAWTC 3 cut(s) 797, 977, 1009
Tru1I TTAA 2 cut(s) 297, 566
Tru9I TTAA 2 cut(s) 297, 566
TscAI CASTG 1 cut(s) 491
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 214, 316, 391
TspRI CASTG 1 cut(s) 491
Vha464I CTTAAG 1 cut(s) 565
VpaK11BI GGWCC 2 cut(s) 194, 695
XapI RAATTY 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 73, 1008
XspI CTAG 3 cut(s) 57, 119, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.