pycom02g11320

SAM dependent carboxyl methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
8009523 .. 8011777
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11320.4

Sequence Viewer

Length: 1092 bp
ATGGATGTAGAGAATGTCTTCCACATGACTGGAGGAGTTGGCCTTACTAGCTATGCCAGAAATTCTTCACTCCAGAAGAAGGCATCTGATATGGTAAAGAACATAACTTTAGAGGCAATACAAGAACTTTACCTCACCACAACTCCAAAGAGCTTAGGCATAGCTGATTTGGGCTGTTCATCTGGACCCAACACCTTATCAATCATCAAAGAAATCATTGAAGCAGTTGAAGGTGTTTGTAGAAGAACATTCCAACCATCACAAGAGTTCAGAGTTTACCTCAATGACCTTCCCTCCAATGACTTCAATTCAATCTTCAAGGCTTTGCCAGACTTCTCCAAAGACCTCAACAAAGAAAGAAACAATGGGAAATCTCCCTCTGTTTATATAGGAGCCTATCCTGGCTCATTTTATGGCAGACTTTTCCCCAACAATTCCTTGCACTTTGTCTACTCATCCTACAGTTTGCACTGGCTATCCAGGGTTCCTCCAGAGCTTTACTGCAAAGAGGGGAAGTCTATAAACAAAGGAAGTGTTTACATTTCTGAATCAAGCCCTGTTGGAGTTTCTCAAGCTTACCTGAAGCAATTTCAAGAGGACTTCACTTTGTTCCTTAAGTCAAGGTCCGAGGAGCTGGATGCAGGAGGAAGAATGGTGCTTATCTTGTTGGGAAGGAGTGGCCCAGATCATGTCGACAGAGGCAACTGTTTCTTCTGGCAGCTTGTTTCTCAGTCCATTGCCATTTTGGTTTCCAAGGGAGATGTTGAAGAGGAAAGGCTTGACTCATATGATGTGCATTTCTATGCTCCATCCAGAGAAGAAATAGAAGATGAAGTGAGGAAGGAAGGTTCATTTGAATTGGAGAGGTTTGAGATGTTTGGGCTGGATCATAGGCATGGCAAGAACAATGAGAGCTATGGAACAAGAGTTGCAATGACTGTGAGGGCTATTCAAGAATCCATGATAGGGCAGCATTTTGGAGAAGGAATCTTGGACAGTTTGTTTGAAAATTTTGGAAGATTGGTGGATGAGGAAACTGCTAAAGAAGACATTAAGCCCATCACTTTTGGGGTTGTACTTAAGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

40.92

Weight (kDa)

5.35

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36470
fragaria_vesca FvH4_1g12770
malus_domestica MD15G1256500.v1.1
prunus_persica Prupe.7G158400_v2.0.a1 Prupe.7G158400_v2.0.a1
pyrus_communis pycom02g11320 pycom15g22440
rosa_chinensis RchiOBHm_Chr2g0100891
rosa_laevigata RLG00000017021
rosa_multiflora Rmu_sc0001659.1_g000045
rosa_roxburghii Rroxscaffold_2G00141760
rosa_rugosa Rorug02G0093400
rosa_samantha Rh2BG146100
rosa_wichuraiana Rw2G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 450, 693
AclWI GGATC 1 cut(s) 894
AcsI RAATTY 3 cut(s) 61, 1009, 1085
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 1 cut(s) 1077
AfiI CCNNNNNNNGG 2 cut(s) 79, 966
AflII CTTAAG 2 cut(s) 614, 1079
AjnI CCWGG 2 cut(s) 400, 479
AloI GAACNNNNNNTCC 2 cut(s) 832, 864
AluBI AGCT 8 cut(s) 51, 153, 164, 496, 575, 634, 721, 915
AluI AGCT 8 cut(s) 51, 153, 164, 496, 575, 634, 721, 915
AlwI GGATC 1 cut(s) 894
AoxI GGCC 2 cut(s) 40, 679
ApeKI GCWGC 2 cut(s) 718, 970
ApoI RAATTY 3 cut(s) 61, 1009, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
Asp700I GAANNNNTTC 2 cut(s) 17, 64
AspS9I GGNCC 3 cut(s) 185, 624, 680
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 2 cut(s) 185, 624
BbsI GAAGAC 2 cut(s) 10, 1053
BbvI GCAGC 2 cut(s) 730, 982
BccI CCATC 3 cut(s) 265, 817, 1067
BciT130I CCWGG 2 cut(s) 402, 481
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 460
BfrI CTTAAG 2 cut(s) 614, 1079
BisI GCNGC 2 cut(s) 719, 971
BlsI GCNGC 2 cut(s) 720, 972
Bme1390I CCNGG 2 cut(s) 402, 481
Bme18I GGWCC 2 cut(s) 185, 624
BmgT120I GGNCC 3 cut(s) 185, 624, 680
BmiI GGNNCC 3 cut(s) 187, 394, 486
BmrFI CCNGG 2 cut(s) 402, 481
BmsI GCATC 2 cut(s) 92, 628
BpiI GAAGAC 2 cut(s) 10, 1053
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpmI CTGGAG 3 cut(s) 51, 56, 474
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 555
BsaJI CCNNGG 3 cut(s) 480, 627, 753
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 966
Bse1I ACTGG 2 cut(s) 34, 476
Bse3DI GCAATG 2 cut(s) 735, 939
BseBI CCWGG 2 cut(s) 402, 481
BseDI CCNNGG 3 cut(s) 480, 627, 753
BseGI GGATG 5 cut(s) 10, 455, 643, 809, 1033
BseLI CCNNNNNNNGG 2 cut(s) 79, 966
BseMI GCAATG 2 cut(s) 735, 939
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 2 cut(s) 34, 476
BseRI GAGGAG 2 cut(s) 48, 644
BseXI GCAGC 2 cut(s) 730, 982
BshFI GGCC 2 cut(s) 42, 681
BslI CCNNNNNNNGG 2 cut(s) 79, 966
BsnI GGCC 2 cut(s) 42, 681
Bsp143I GATC 2 cut(s) 685, 886
BspANI GGCC 2 cut(s) 42, 681
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 187, 394, 486
BspPI GGATC 1 cut(s) 894
BspTI CTTAAG 2 cut(s) 614, 1079
BsrDI GCAATG 2 cut(s) 735, 939
BsrI ACTGG 2 cut(s) 34, 476
BssECI CCNNGG 3 cut(s) 480, 627, 753
BssMI GATC 2 cut(s) 685, 886
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 402, 481
Bst4CI ACNGT 4 cut(s) 464, 707, 940, 998
Bst6I CTCTTC 1 cut(s) 762
BstAFI CTTAAG 2 cut(s) 614, 1079
BstDEI CTNAG 2 cut(s) 154, 729
BstF5I GGATG 5 cut(s) 10, 455, 643, 809, 1033
BstKTI GATC 2 cut(s) 688, 889
BstMBI GATC 2 cut(s) 685, 886
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 2 cut(s) 402, 481
BstSCI CCNGG 2 cut(s) 400, 479
BstSFI CTRYAG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 730, 982
BstV2I GAAGAC 2 cut(s) 10, 1053
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 42, 681
BtsCI GGATG 5 cut(s) 10, 455, 643, 809, 1033
BtsIMutI CAGTG 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 185, 624, 680
Csp6I GTAC 1 cut(s) 1076
CviAII CATG 4 cut(s) 25, 689, 896, 961
CviQI GTAC 1 cut(s) 1076
DdeI CTNAG 2 cut(s) 154, 729
DpnI GATC 2 cut(s) 687, 888
DpnII GATC 2 cut(s) 685, 886
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 753
Eco47I GGWCC 2 cut(s) 185, 624
Eco57I CTGAAG 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 400, 479
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 4 cut(s) 28, 692, 899, 964
FatI CATG 4 cut(s) 24, 688, 895, 960
FauNDI CATATG 1 cut(s) 787
FblI GTMKAC 2 cut(s) 450, 693
Fnu4HI GCNGC 2 cut(s) 719, 971
FokI GGATG 5 cut(s) 17, 442, 650, 796, 1040
Fsp4HI GCNGC 2 cut(s) 719, 971
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 719, 971
GsuI CTGGAG 3 cut(s) 51, 56, 474
HaeIII GGCC 2 cut(s) 42, 681
Hin1II CATG 4 cut(s) 28, 692, 899, 964
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 4 cut(s) 548, 782, 956, 987
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 277, 451, 538, 694
Hpy188I TCNGA 4 cut(s) 88, 272, 547, 628
Hpy188III TCNNGA 6 cut(s) 73, 183, 491, 593, 813, 953
Hpy8I GTNNAC 4 cut(s) 277, 451, 538, 694
HpyAV CCTTC 7 cut(s) 73, 224, 299, 666, 835, 839, 977
HpyCH4III ACNGT 4 cut(s) 464, 707, 940, 998
HpyCH4V TGCA 6 cut(s) 442, 469, 504, 641, 796, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 2 cut(s) 154, 729
Hsp92II CATG 4 cut(s) 28, 692, 899, 964
Kzo9I GATC 2 cut(s) 685, 886
LmnI GCTCC 3 cut(s) 392, 631, 811
Lsp1109I GCAGC 2 cut(s) 730, 982
LweI GCATC 2 cut(s) 92, 628
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 687, 888
MboI GATC 2 cut(s) 685, 886
MluCI AATT 7 cut(s) 61, 307, 433, 587, 857, 1009, 1085
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 2 cut(s) 277, 541
MroXI GAANNNNTTC 2 cut(s) 17, 64
MseI TTAA 3 cut(s) 615, 1053, 1080
MslI CAYNNNNRTG 2 cut(s) 801, 894
MspCI CTTAAG 2 cut(s) 614, 1079
MspR9I CCNGG 2 cut(s) 402, 481
MvaI CCWGG 2 cut(s) 402, 481
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeI CATATG 1 cut(s) 787
NdeII GATC 2 cut(s) 685, 886
NlaIII CATG 4 cut(s) 28, 692, 899, 964
NlaIV GGNNCC 3 cut(s) 187, 394, 486
PdmI GAANNNNTTC 2 cut(s) 17, 64
PfeI GAWTC 3 cut(s) 548, 956, 987
PkrI GCNGC 2 cut(s) 720, 972
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
Psp6I CCWGG 2 cut(s) 400, 479
PspGI CCWGG 2 cut(s) 400, 479
PspN4I GGNNCC 3 cut(s) 187, 394, 486
PspPI GGNCC 3 cut(s) 185, 624, 680
RsaI GTAC 1 cut(s) 1077
RsaNI GTAC 1 cut(s) 1076
RseI CAYNNNNRTG 2 cut(s) 801, 894
SalI GTCGAC 1 cut(s) 692
SaqAI TTAA 3 cut(s) 615, 1053, 1080
SatI GCNGC 2 cut(s) 719, 971
Sau3AI GATC 2 cut(s) 685, 886
Sau96I GGNCC 3 cut(s) 185, 624, 680
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 402, 481
SfaNI GCATC 2 cut(s) 92, 628
SfcI CTRYAG 1 cut(s) 460
SinI GGWCC 2 cut(s) 185, 624
SmiMI CAYNNNNRTG 2 cut(s) 801, 894
SmlI CTYRAG 3 cut(s) 570, 614, 1079
SmoI CTYRAG 3 cut(s) 570, 614, 1079
Sse9I AATT 7 cut(s) 61, 307, 433, 587, 857, 1009, 1085
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 400, 479
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 4 cut(s) 464, 707, 940, 998
TaqI TCGA 1 cut(s) 693
TasI AATT 7 cut(s) 61, 307, 433, 587, 857, 1009, 1085
TatI WGTACW 1 cut(s) 1075
TfiI GAWTC 3 cut(s) 548, 956, 987
Tru1I TTAA 3 cut(s) 615, 1053, 1080
Tru9I TTAA 3 cut(s) 615, 1053, 1080
TscAI CASTG 1 cut(s) 476
TseI GCWGC 2 cut(s) 718, 970
TspDTI ATGAA 3 cut(s) 168, 840, 846
TspRI CASTG 1 cut(s) 476
Vha464I CTTAAG 2 cut(s) 614, 1079
VpaK11BI GGWCC 2 cut(s) 185, 624
XapI RAATTY 3 cut(s) 61, 1009, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmiI GTMKAC 2 cut(s) 450, 693
XmnI GAANNNNTTC 2 cut(s) 17, 64
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.