RLG00000017021

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016697
Physical Location & Seq
Forward (+)
12165361 .. 12168066
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017021

Sequence Viewer

Length: 1089 bp
ATGGATGTAGAGAAAGTCTTTCACATGTCTGGAGGCATTGGCCACAATAGCTATGCAAAAAACTCTTCCCTCCAAAAGAAGGCTTCTGATATGGTCAAGGACATGACCTTGGAAACAGTCCAAGAACTTTACCTTACAACAGCTCCAAAGAGCTTAGGCATAGCTGATCTGGGTTGCTCATCAGGCCCCAACACCTTGTCAATCATGAAAGAGATCATTGAAGCAGTCCAAGGAACAAGTAGAAAAGCCTTCCACACAGCACCAGAATTCAGAGTGTACCTTAATGATCTTCCCACTAATGACTTCAACTCAATCTTCAAGTCCTTGCCAGAGTTCTCAAGGGACCTCAACAAAGAAACGAACACTGGGCCTCCTTCCATTTATATAGGAGGTTATCCAGGCTCATTTTATGGGAGACTTTTCCCCAACAACTCCTTGCACTTTGTATATTCATCTTACAGTTTACACTGGCTGTCTAGGGTTCCTCCAGCTATTTACTCAGAGCAAGGGAAGTCCTTAAACAAAGGCAGTGTTTACATTTCTGAATCAAGCCCTCTTGTAGTGGCTGACGCATACTTGAAGCAATTCCAGGAAGACTTCACTTTGTTTCTTCAGACAAGGTCTGAGGAGTTGATTTCAGGAGGGAAAATGGTGCTGATCTTGTTGGGCAGGAGCGGCCCTGATCATGTGGACAGAGGCAACTCTTTCTTCTGGGAGCTTCTTTATCAGTCCATTGCCATTTTGGTTTCCAAGGGAGAAGTTGAGAAGGAAAAGCTGGATTCATATGATGTGCATTTCTATGCTCCATCCAAAGATGAATTAGAAGATGCAGTGAGGAAAGAGGGTTCTTTTGGATTGGACAGGTTCGAGATGTTTGAATTAGAGAGGGACAATCATAAGGACAATGAGAGCTATGCAACAGGTGTTGCAATGACTGTAAGGGCTATTCAAGAATCAATGATTGGCCAACACTTTGGAGAAGAAATCTTGGACAGTTTATTTGAGAACTATAGAAGATTGGTAGGCGAAGAAATTGCCAAAGAAGACATTAAGCCTATTACTTTTGGGCTTGTACTTAGAAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

363

Amino Acids

40.76

Weight (kDa)

5.25

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 38 - 361 6.8e-121 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36470
fragaria_vesca FvH4_1g12770
malus_domestica MD15G1256500.v1.1
prunus_persica Prupe.7G158400_v2.0.a1 Prupe.7G158400_v2.0.a1
pyrus_communis pycom02g11320 pycom15g22440
rosa_chinensis RchiOBHm_Chr2g0100891
rosa_laevigata RLG00000017021
rosa_multiflora Rmu_sc0001659.1_g000045
rosa_roxburghii Rroxscaffold_2G00141760
rosa_rugosa Rorug02G0093400
rosa_samantha Rh2BG146100
rosa_wichuraiana Rw2G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 675
AciI CCGC 1 cut(s) 675
AcoI YGGCCR 2 cut(s) 40, 964
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 2 cut(s) 278, 1074
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 6 cut(s) 221, 307, 319, 580, 878, 950
AjnI CCWGG 2 cut(s) 397, 588
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AloI GAACNNNNNNTCC 2 cut(s) 829, 861
AluBI AGCT 8 cut(s) 51, 143, 153, 164, 491, 718, 775, 912
AluI AGCT 8 cut(s) 51, 143, 153, 164, 491, 718, 775, 912
Alw26I GTCTC 1 cut(s) 409
AoxI GGCC 5 cut(s) 40, 184, 368, 676, 964
ApoI RAATTY 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
Asp700I GAANNNNTTC 1 cut(s) 584
AspS9I GGNCC 4 cut(s) 185, 343, 368, 677
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 2 cut(s) 42, 966
BbsI GAAGAC 2 cut(s) 600, 1050
BccI CCATC 1 cut(s) 814
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 2 cut(s) 399, 590
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 1009
BisI GCNGC 1 cut(s) 676
BlsI GCNGC 1 cut(s) 677
Bme1390I CCNGG 2 cut(s) 399, 590
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 4 cut(s) 185, 343, 368, 677
BmiI GGNNCC 3 cut(s) 187, 344, 483
BmrFI CCNGG 2 cut(s) 399, 590
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 817
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 600, 1050
BpmI CTGGAG 2 cut(s) 51, 471
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 108, 229, 750
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 370, 473
Bse3DI GCAATG 2 cut(s) 732, 936
BseBI CCWGG 2 cut(s) 399, 590
BseDI CCNNGG 3 cut(s) 108, 229, 750
BseGI GGATG 2 cut(s) 10, 806
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 732, 936
BseMII CTCAG 2 cut(s) 513, 615
BseNI ACTGG 2 cut(s) 370, 473
BseRI GAGGAG 1 cut(s) 641
BshFI GGCC 5 cut(s) 42, 186, 370, 678, 966
BslFI GGGAC 2 cut(s) 356, 902
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 2 cut(s) 356, 902
BsnI GGCC 5 cut(s) 42, 186, 370, 678, 966
Bsp143I GATC 5 cut(s) 166, 213, 286, 657, 682
BspACI CCGC 1 cut(s) 675
BspANI GGCC 5 cut(s) 42, 186, 370, 678, 966
BspCNI CTCAG 2 cut(s) 512, 616
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 187, 344, 483
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 2 cut(s) 732, 936
BsrI ACTGG 2 cut(s) 370, 473
BssECI CCNNGG 3 cut(s) 108, 229, 750
BssMI GATC 5 cut(s) 166, 213, 286, 657, 682
BssT1I CCWWGG 3 cut(s) 108, 229, 750
Bst2UI CCWGG 2 cut(s) 399, 590
Bst4CI ACNGT 4 cut(s) 118, 461, 937, 995
Bst6I CTCTTC 1 cut(s) 70
BstDEI CTNAG 4 cut(s) 154, 499, 624, 1076
BstF5I GGATG 2 cut(s) 10, 806
BstKTI GATC 5 cut(s) 169, 216, 289, 660, 685
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 5 cut(s) 166, 213, 286, 657, 682
BstMWI GCNNNNNNNGC 3 cut(s) 48, 183, 675
BstNI CCWGG 2 cut(s) 399, 590
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 397, 588
BstSFI CTRYAG 1 cut(s) 1009
BstV2I GAAGAC 2 cut(s) 600, 1050
BstXI CCANNNNNNTGG 1 cut(s) 974
BsuRI GGCC 5 cut(s) 42, 186, 370, 678, 966
BtsCI GGATG 2 cut(s) 10, 806
BtsI GCAGTG 2 cut(s) 535, 837
BtsIMutI CAGTG 4 cut(s) 363, 466, 535, 837
CciI TCATGA 1 cut(s) 204
Cfr13I GGNCC 4 cut(s) 185, 343, 368, 677
CseI GACGC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 277, 1073
CviAII CATG 4 cut(s) 25, 103, 205, 686
CviQI GTAC 2 cut(s) 277, 1073
DdeI CTNAG 4 cut(s) 154, 499, 624, 1076
DpnI GATC 5 cut(s) 168, 215, 288, 659, 684
DpnII GATC 5 cut(s) 166, 213, 286, 657, 682
EaeI YGGCCR 2 cut(s) 40, 964
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 108, 229, 750
Eco47I GGWCC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 596
EcoO109I RGGNCCY 2 cut(s) 185, 343
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 397, 588
EcoT14I CCWWGG 3 cut(s) 108, 229, 750
ErhI CCWWGG 3 cut(s) 108, 229, 750
FaeI CATG 4 cut(s) 28, 106, 208, 689
FaqI GGGAC 2 cut(s) 356, 902
FatI CATG 4 cut(s) 24, 102, 204, 685
FauNDI CATATG 1 cut(s) 784
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 1 cut(s) 676
FokI GGATG 2 cut(s) 17, 793
Fsp4HI GCNGC 1 cut(s) 676
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 676
GsuI CTGGAG 2 cut(s) 51, 471
HaeIII GGCC 5 cut(s) 42, 186, 370, 678, 966
HgaI GACGC 1 cut(s) 578
Hin1II CATG 4 cut(s) 28, 106, 208, 689
HinfI GANTC 3 cut(s) 545, 779, 953
Hpy166II GTNNAC 4 cut(s) 277, 464, 535, 691
Hpy188I TCNGA 6 cut(s) 88, 272, 502, 544, 615, 625
Hpy188III TCNNGA 5 cut(s) 30, 205, 639, 868, 950
Hpy8I GTNNAC 4 cut(s) 277, 464, 535, 691
HpyAV CCTTC 4 cut(s) 73, 259, 384, 760
HpyCH4III ACNGT 4 cut(s) 118, 461, 937, 995
HpyCH4V TGCA 6 cut(s) 56, 439, 793, 830, 917, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 183, 675
HpyF3I CTNAG 4 cut(s) 154, 499, 624, 1076
Hsp92II CATG 4 cut(s) 28, 106, 208, 689
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 5 cut(s) 166, 213, 286, 657, 682
LmnI GCTCC 4 cut(s) 148, 672, 715, 808
LweI GCATC 1 cut(s) 817
MaeI CTAG 1 cut(s) 477
MalI GATC 5 cut(s) 168, 215, 288, 659, 684
MbiI CCGCTC 1 cut(s) 675
MboI GATC 5 cut(s) 166, 213, 286, 657, 682
MlsI TGGCCA 2 cut(s) 42, 966
MluCI AATT 5 cut(s) 266, 584, 818, 878, 1032
MluNI TGGCCA 2 cut(s) 42, 966
Mox20I TGGCCA 2 cut(s) 42, 966
MroXI GAANNNNTTC 1 cut(s) 584
MscI TGGCCA 2 cut(s) 42, 966
MseI TTAA 3 cut(s) 282, 518, 1050
MslI CAYNNNNRTG 1 cut(s) 798
Msp20I TGGCCA 2 cut(s) 42, 966
MspR9I CCNGG 2 cut(s) 399, 590
MvaI CCWGG 2 cut(s) 399, 590
MwoI GCNNNNNNNGC 3 cut(s) 48, 183, 675
NdeI CATATG 1 cut(s) 784
NdeII GATC 5 cut(s) 166, 213, 286, 657, 682
NlaIII CATG 4 cut(s) 28, 106, 208, 689
NlaIV GGNNCC 3 cut(s) 187, 344, 483
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 204
PciI ACATGT 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 3 cut(s) 545, 779, 953
PflFI GACNNNGTC 1 cut(s) 619
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 1 cut(s) 677
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 397, 588
PspGI CCWGG 2 cut(s) 397, 588
PspN4I GGNNCC 3 cut(s) 187, 344, 483
PspPI GGNCC 4 cut(s) 185, 343, 368, 677
PspPPI RGGWCCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 619
RsaI GTAC 2 cut(s) 278, 1074
RsaNI GTAC 2 cut(s) 277, 1073
RseI CAYNNNNRTG 1 cut(s) 798
SaqAI TTAA 3 cut(s) 282, 518, 1050
SatI GCNGC 1 cut(s) 676
Sau3AI GATC 5 cut(s) 166, 213, 286, 657, 682
Sau96I GGNCC 4 cut(s) 185, 343, 368, 677
ScrFI CCNGG 2 cut(s) 399, 590
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 1009
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 5 cut(s) 266, 584, 818, 878, 1032
SsiI CCGC 1 cut(s) 675
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 397, 588
StyI CCWWGG 3 cut(s) 108, 229, 750
TaaI ACNGT 4 cut(s) 118, 461, 937, 995
TaqI TCGA 1 cut(s) 867
TasI AATT 5 cut(s) 266, 584, 818, 878, 1032
TatI WGTACW 1 cut(s) 1072
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 3 cut(s) 545, 779, 953
Tru1I TTAA 3 cut(s) 282, 518, 1050
Tru9I TTAA 3 cut(s) 282, 518, 1050
TscAI CASTG 4 cut(s) 370, 473, 535, 837
TspDTI ATGAA 4 cut(s) 221, 441, 771, 831
TspRI CASTG 4 cut(s) 370, 473, 535, 837
Tth111I GACNNNGTC 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.