AT4G36970

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015449
Physical Location & Seq
Reverse (-)
17429744 .. 17431685
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36970.1

Sequence Viewer

Length: 1284 bp
ATGAGAAAGACTTCTGTTTCATCTAATAGCTTTGGTGGGTTTTTAAGTCCCGGAGCTCCGAGTTACGCTGACAACAAAGGTTGGAGCTCCGAGAGAGTTCCTCATCCTTCCTCCACTACTTCCTCCTCTGCAATTAACGGTGGTCGTCGTCACATCGGCTCTTCTTCCGCTTTAACGACGCCGTTTTACAGCGGCAGAGCAATTCCTTCGAAATGGGAAGATGCTGAGCGGTGGATTTGTAGCCCTGTGTCGACTTACCCACAAGGTGTTTGTTTAAATTCCTCAGTGAGTTCTGAACAGAGAAGGCAGAAATCTAAAAGTGGTCCGATTGTTCCTCCTACGTTGCCTCATCCGCATCCTACGTCTTCTTCGTCGGCGACTGGGTGTTATCACTATTCTCCGAGGATGATGATGCGGTCTATGGATGCTCCTCCTAAGGGTTTAATGGTTGCTGGTTCTCCGTTTTCTACTGGAGTTTTGGAGGCGGATAGGGTTTTTAGAGGAAGTGTCGGTGGTGGTGGTTGTGATGGCTATGGTCGTGGACCTGGCCATGGACATAGCCGGAGCTGGGTTGATTTGATGAGTGAAGAAACTTCTTCACTTAGCTCCAAAACTGATACAGAGGAGAAAGCAGAGATGACGACGGCGATGCAATCTCCGGTGGTATCAAGAAGAGATATGGCTACTCAGATGAGTCCAGAAGAGACGAGTCCTAATAACAATAACCAGTCTCCACCATTGGTTGTTTCTGTGATTGAGCCACCTCCTTGTAGAGGTGAAGTGAGAGAAGTGAAAATGGATAAAGGAGCAAGAATGATTAAGCGTCCAAAGAGACGAGTCATGTCTTCTAGGATTATTAGGAGAGAGCAACCTGAGGTTGAAGACAATTCTGAAGCTTCTGCTTCTTCTTCTTCTTGGGATATCTCAGAACCAGCCATGACTCTTTCTAAGTTGCAAAGAGAGGAAGCGAAGATTGCAGCTTGGGAAAATCTGCAGAAGGCGAAAGCAGAAGCCGCTATTAGAAAACTTGAGGTGAAGCTGGAGAAGAAGAAATCAGCATCAATGGATAAGATCTTGAACAAGCTTCAAACAGCTAAGATCAAAGCACAAGAGATGAGGAGAAGTTCAGTATCCAGTGAACATGAACAACAACAAGGGAATCATCAAATCTCCAGAAACTCGGTGAAGATCACGCATCTTGTTCGAAGACATACTTTCATGACTCCTTTCATGACTTGCTTTGCTCCTCGTGTTGATTGCAGAAAATCTTCTTCTGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

427

Amino Acids

46.8

Weight (kDa)

9.75

Isoelectric Point (pI)

76.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 298 - 385 1.7e-22 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 251
AciI CCGC 7 cut(s) 168, 192, 229, 353, 415, 485, 1014
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 912
AcyI GRCGYC 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 437, 551, 568, 773
AgsI TTSAA 3 cut(s) 881, 1078, 1088
AjnI CCWGG 1 cut(s) 544
Alw21I GWGCWC 2 cut(s) 58, 89
Alw26I GTCTC 3 cut(s) 698, 735, 826
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 977
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 2 cut(s) 10, 1267
AspS9I GGNCC 2 cut(s) 323, 542
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 788, 1045, 1195
AsuII TTCGAA 2 cut(s) 209, 1204
AvaII GGWCC 2 cut(s) 323, 542
AxyI CCTNAGG 2 cut(s) 435, 873
BalI TGGCCA 1 cut(s) 549
BanII GRGCYC 2 cut(s) 58, 89
BauI CACGAG 1 cut(s) 1248
BbsI GAAGAC 4 cut(s) 357, 837, 888, 1213
Bbv12I GWGCWC 2 cut(s) 58, 89
BbvI GCAGC 1 cut(s) 989
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 166, 660
BcgI CGANNNNNNTGC 6 cut(s) 189, 223, 631, 665, 1184, 1218
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 1141
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 698, 735, 826
BfaI CTAG 1 cut(s) 849
BfmI CTRYAG 1 cut(s) 992
BfuI GTATCC 1 cut(s) 1141
BglII AGATCT 1 cut(s) 1071
BisI GCNGC 3 cut(s) 193, 978, 1014
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 3 cut(s) 194, 979, 1015
Bme1390I CCNGG 2 cut(s) 51, 546
Bme18I GGWCC 2 cut(s) 323, 542
BmgT120I GGNCC 2 cut(s) 323, 542
BmrFI CCNGG 2 cut(s) 51, 546
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 7 cut(s) 211, 364, 402, 415, 639, 1067, 1204
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 4 cut(s) 357, 837, 888, 1213
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 3 cut(s) 492, 1061, 1156
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 2 cut(s) 209, 1204
BpuEI CTTGAG 1 cut(s) 1049
BpuMI CCSGG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 401, 550
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 551, 568, 773
Bse1I ACTGG 4 cut(s) 385, 475, 727, 1134
Bse21I CCTNAGG 2 cut(s) 435, 873
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 401, 550
BseGI GGATG 5 cut(s) 103, 349, 355, 411, 430
BseLI CCNNNNNNNGG 4 cut(s) 437, 551, 568, 773
BseMII CTCAG 5 cut(s) 216, 297, 701, 864, 939
BseNI ACTGG 4 cut(s) 385, 475, 727, 1134
BseRI GAGGAG 5 cut(s) 115, 420, 638, 1132, 1236
BseXI GCAGC 1 cut(s) 989
BseYI CCCAGC 1 cut(s) 567
BshFI GGCC 1 cut(s) 549
BsiHKAI GWGCWC 2 cut(s) 58, 89
BsiSI CCGG 3 cut(s) 51, 562, 659
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 4 cut(s) 437, 551, 568, 773
BsmAI GTCTC 3 cut(s) 698, 735, 826
BsmBI CGTCTC 2 cut(s) 698, 826
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 549
Bsp119I TTCGAA 2 cut(s) 209, 1204
Bsp1286I GDGCHC 2 cut(s) 58, 89
Bsp143I GATC 3 cut(s) 1071, 1098, 1188
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 7 cut(s) 168, 192, 229, 353, 415, 485, 1014
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 5 cut(s) 217, 296, 700, 865, 938
BspHI TCATGA 2 cut(s) 1218, 1230
BspMAI CTGCAG 1 cut(s) 996
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 2 cut(s) 209, 1204
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 4 cut(s) 385, 475, 727, 1134
BssECI CCNNGG 2 cut(s) 401, 550
BssMI GATC 3 cut(s) 1071, 1098, 1188
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 1248
BssT1I CCWWGG 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 1248
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 3 cut(s) 166, 667, 696
BstACI GRCGYC 1 cut(s) 179
BstBI TTCGAA 2 cut(s) 209, 1204
BstDEI CTNAG 9 cut(s) 225, 283, 435, 602, 687, 873, 925, 948, 1095
BstDSI CCRYGG 1 cut(s) 550
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 103, 349, 355, 411, 430
BstKTI GATC 3 cut(s) 1074, 1101, 1191
BstMAI GTCTC 3 cut(s) 698, 735, 826
BstMBI GATC 3 cut(s) 1071, 1098, 1188
BstMWI GCNNNNNNNGC 3 cut(s) 352, 974, 1013
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 2 cut(s) 49, 544
BstSFI CTRYAG 1 cut(s) 992
BstV1I GCAGC 1 cut(s) 989
BstV2I GAAGAC 4 cut(s) 357, 837, 888, 1213
BstX2I RGATCY 1 cut(s) 1071
BstYI RGATCY 1 cut(s) 1071
Bsu36I CCTNAGG 2 cut(s) 435, 873
BsuI GTATCC 1 cut(s) 1141
BsuRI GGCC 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 5 cut(s) 103, 349, 355, 411, 430
BtsIMutI CAGTG 2 cut(s) 291, 1141
CciI TCATGA 2 cut(s) 1218, 1230
Cfr13I GGNCC 2 cut(s) 323, 542
CseI GACGC 2 cut(s) 187, 812
CviAII CATG 6 cut(s) 551, 841, 937, 1142, 1219, 1231
DdeI CTNAG 9 cut(s) 225, 283, 435, 602, 687, 873, 925, 948, 1095
DpnI GATC 3 cut(s) 1073, 1100, 1190
DpnII GATC 3 cut(s) 1071, 1098, 1188
DraI TTTAAA 1 cut(s) 276
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 3 cut(s) 166, 667, 696
EarI CTCTTC 3 cut(s) 166, 667, 696
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 56, 87
Eco130I CCWWGG 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 58, 89
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 323, 542
Eco53kI GAGCTC 2 cut(s) 56, 87
Eco57I CTGAAG 1 cut(s) 912
Eco81I CCTNAGG 2 cut(s) 435, 873
EcoICRI GAGCTC 2 cut(s) 56, 87
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoRII CCWGG 1 cut(s) 544
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 550
EcoT38I GRGCYC 2 cut(s) 58, 89
ErhI CCWWGG 1 cut(s) 550
Esp3I CGTCTC 2 cut(s) 698, 826
FaeI CATG 6 cut(s) 554, 844, 940, 1145, 1222, 1234
FalI AAGNNNNNCTT 2 cut(s) 1198, 1230
FaqI GGGAC 1 cut(s) 33
FatI CATG 6 cut(s) 550, 840, 936, 1141, 1218, 1230
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 193, 978, 1014
FokI GGATG 5 cut(s) 90, 336, 342, 418, 437
FriOI GRGCYC 2 cut(s) 58, 89
Fsp4HI GCNGC 3 cut(s) 193, 978, 1014
FspBI CTAG 1 cut(s) 849
GluI GCNGC 3 cut(s) 193, 978, 1014
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 3 cut(s) 492, 1061, 1156
HaeIII GGCC 1 cut(s) 549
HapII CCGG 3 cut(s) 51, 562, 659
HgaI GACGC 2 cut(s) 187, 812
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 6 cut(s) 554, 844, 940, 1145, 1222, 1234
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HindIII AAGCTT 2 cut(s) 894, 1082
HinfI GANTC 6 cut(s) 694, 709, 837, 940, 1159, 1222
HpaII CCGG 3 cut(s) 51, 562, 659
HphI GGTGA 3 cut(s) 788, 1045, 1195
Hpy166II GTNNAC 3 cut(s) 252, 542, 1139
Hpy188I TCNGA 9 cut(s) 60, 91, 295, 327, 402, 690, 892, 928, 1283
Hpy188III TCNNGA 6 cut(s) 669, 698, 1075, 1173, 1219, 1231
Hpy8I GTNNAC 3 cut(s) 252, 542, 1139
Hpy99I CGWCG 4 cut(s) 150, 181, 376, 646
HpyAV CCTTC 4 cut(s) 117, 216, 297, 991
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 341, 362
HpyCH4V TGCA 6 cut(s) 131, 652, 955, 977, 994, 1260
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 974, 1013
HpyF3I CTNAG 9 cut(s) 225, 283, 435, 602, 687, 873, 925, 948, 1095
HpySE526I ACGT 2 cut(s) 341, 362
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 6 cut(s) 554, 844, 940, 1145, 1222, 1234
Kzo9I GATC 3 cut(s) 1071, 1098, 1188
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 9 cut(s) 53, 61, 84, 92, 433, 564, 611, 806, 1249
Lsp1109I GCAGC 1 cut(s) 989
LweI GCATC 7 cut(s) 211, 364, 402, 415, 639, 1067, 1204
MaeI CTAG 1 cut(s) 849
MaeII ACGT 2 cut(s) 341, 362
MaeIII GTNAC 2 cut(s) 62, 149
MalI GATC 3 cut(s) 1073, 1100, 1190
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 1071, 1098, 1188
MflI RGATCY 1 cut(s) 1071
MhlI GDGCHC 2 cut(s) 58, 89
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 4 cut(s) 132, 201, 277, 886
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 5 cut(s) 703, 718, 846, 934, 1216
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 549
MroXI GAANNNNTTC 2 cut(s) 10, 1267
MscI TGGCCA 1 cut(s) 549
MseI TTAA 6 cut(s) 44, 135, 173, 275, 443, 819
Msp20I TGGCCA 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 3 cut(s) 51, 562, 659
MspR9I CCNGG 2 cut(s) 51, 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 352, 974, 1013
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 550
NdeII GATC 3 cut(s) 1071, 1098, 1188
NlaIII CATG 6 cut(s) 554, 844, 940, 1145, 1222, 1234
NmuCI GTSAC 1 cut(s) 149
NspV TTCGAA 2 cut(s) 209, 1204
PagI TCATGA 2 cut(s) 1218, 1230
PciSI GCTCTTC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdmI GAANNNNTTC 2 cut(s) 10, 1267
PfeI GAWTC 1 cut(s) 1159
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 3 cut(s) 194, 979, 1015
PleI GAGTC 5 cut(s) 702, 717, 845, 934, 1216
PpsI GAGTC 5 cut(s) 702, 717, 845, 934, 1216
Psp124BI GAGCTC 2 cut(s) 58, 89
Psp6I CCWGG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 1 cut(s) 544
PspPI GGNCC 2 cut(s) 323, 542
PstI CTGCAG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 1071
SacI GAGCTC 2 cut(s) 58, 89
SalI GTCGAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 6 cut(s) 44, 135, 173, 275, 443, 819
SatI GCNGC 3 cut(s) 193, 978, 1014
Sau3AI GATC 3 cut(s) 1071, 1098, 1188
Sau96I GGNCC 2 cut(s) 323, 542
SchI GAGTC 5 cut(s) 703, 718, 846, 934, 1216
ScrFI CCNGG 2 cut(s) 51, 546
SduI GDGCHC 2 cut(s) 58, 89
SfaNI GCATC 7 cut(s) 211, 364, 402, 415, 639, 1067, 1204
SfcI CTRYAG 1 cut(s) 992
SfuI TTCGAA 2 cut(s) 209, 1204
SinI GGWCC 2 cut(s) 323, 542
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 4 cut(s) 132, 201, 277, 886
SsiI CCGC 7 cut(s) 168, 192, 229, 353, 415, 485, 1014
SspMI CTAG 1 cut(s) 849
SstI GAGCTC 2 cut(s) 58, 89
StyD4I CCNGG 2 cut(s) 49, 544
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 344, 365
TaqI TCGA 3 cut(s) 209, 251, 1204
TasI AATT 4 cut(s) 132, 201, 277, 886
TauI GCSGC 2 cut(s) 195, 1016
TfiI GAWTC 1 cut(s) 1159
Tru1I TTAA 6 cut(s) 44, 135, 173, 275, 443, 819
Tru9I TTAA 6 cut(s) 44, 135, 173, 275, 443, 819
TscAI CASTG 2 cut(s) 291, 1141
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 977
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 9, 1158, 1207, 1219
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 2 cut(s) 291, 1141
VpaK11BI GGWCC 2 cut(s) 323, 542
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 10, 1267
XspI CTAG 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.