Prupe.7G133000_v2.0.a1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015449
Physical Location & Seq
Reverse (-)
15150193 .. 15152552
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G133000.1

Sequence Viewer

Length: 1185 bp
ATGAAGAGAGGTTCTGTTTCTCATGATTTGGGTCCATTTCCAAGCATAGGAGGGCCAGATTTTCATGGCAGTAGAATTGGAGGCCAAAAGGGTTGGAGCTCTGAGCGTGTGCCGTTGCCTACAAGCAGTGGACAGAGGCATGCCATCCATGGCAGCACTTCTTTGATGGGGCTGAGCAATGGTGGGAGGACTGTGCCTTCAAAATGGGAAGATGCAGAGAGGTGGATTTGCAGCCCATTTCTCGGATATGGCTGTGAAAGCAACAAGAATGATTCACATTCTCATGGTCATGGTCAGCAGAGGAGGCCTAAGTCCAAGAGTGGTCCAATTGTGCCTCCCGGAGCTGTGTACTGTTCGAATTTTTCGCCTGCAAATCCGGCATTTGATGGCTGCGGCAGCGTGAGGAATTTCGCAATTGGTTCACCATTTTCAACAGGAGTTTTGGCAGCTGAAAGTGTCTCTCTTCTATATGGTGGCAGTGGAGGAATGGGAAGATCAACTAGTGCGCTTGGACCGTTAGAATTGCAAAATGAGAAACTTGATAACACAAAGTGTGAGGAACCAGCGATTTCCCGAGCTGTTTCACAACGAGATATGGGAACCCAAATAACCCCAAATGGTTGCCTCCACCACTCACCACCACCTCCCAAAAGGAGGTCATCATTTGCTCCATCTTCTTCAACTCTTCTTTCCATTGTGGAGCAGCAACGCGAACATTTTGCTAAGTTAGAGGTCAGAGAAGTGCAGGTTGACAATGGAGCCACTGGCACTAAGGGGTCAAGAAGGGGTGGTAGCGTCATGAAAAGACACCCGGATGTTTATGATTTCGACAAAATTGCTATTAAAAACCAACCTCCATCTTTCAATATTGCAGAGGCAGCTATGAACAGTTCAAGAAAGCAAAGAGAGGAAGCCAAGATCACTGCGTGGGAGAACTTGCAGAAGGCAAAAGCTGAAGCAGCACTAAGAAAACTTGAGATGAAATTGGAAAAGAAGAGATCGTCGACAATGGACAAGATCATGAAGAAGGTGAGAAACGCACAAGTTAAAGCCCACAAGATGAGAAGCTCAATAGCAGTTAAAGACGGCCATCAAGCTCCGAAAACTCCCGGAAAGCTTGCTTCCTTCGGTAAGCTTGTCCGGGGGGGTTCCCTGAGCAGTTGCTTTACCCGTAATGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

395

Amino Acids

42.38

Weight (kDa)

9.99

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 1004
AccII CGCG 1 cut(s) 711
AciI CCGC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 1087
AcsI RAATTY 2 cut(s) 358, 406
AcuI CTGAAG 1 cut(s) 975
AdeI CACNNNGTG 2 cut(s) 552, 927
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 47, 242, 654
AgsI TTSAA 5 cut(s) 201, 432, 681, 865, 894
AhlI ACTAGT 1 cut(s) 500
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 4 cut(s) 53, 82, 305, 1087
ApeKI GCWGC 9 cut(s) 153, 231, 390, 396, 446, 703, 878, 959, 1178
ApoI RAATTY 2 cut(s) 358, 406
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 4 cut(s) 32, 53, 323, 512
AsuC2I CCSGG 4 cut(s) 339, 812, 1110, 1142
AsuHPI GGTGA 3 cut(s) 414, 627, 1042
AsuII TTCGAA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 3 cut(s) 32, 323, 512
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 9 cut(s) 165, 243, 377, 408, 458, 715, 890, 971, 1165
BccI CCATC 6 cut(s) 152, 160, 380, 679, 865, 1098
BceAI ACGGC 2 cut(s) 97, 1102
BcgI CGANNNNNNTGC 4 cut(s) 701, 735, 818, 852
BcnI CCSGG 4 cut(s) 339, 812, 1110, 1142
BcoDI GTCTC 1 cut(s) 463
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 736
BlpI GCTNAGC 1 cut(s) 173
Bme1390I CCNGG 4 cut(s) 339, 812, 1110, 1142
Bme18I GGWCC 3 cut(s) 32, 323, 512
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 4 cut(s) 32, 53, 323, 512
BmiI GGNNCC 5 cut(s) 33, 561, 601, 760, 1150
BmrFI CCNGG 4 cut(s) 339, 812, 1110, 1142
BmsI GCATC 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 1154
Bpu1102I GCTNAGC 1 cut(s) 173
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 995
BpuMI CCSGG 4 cut(s) 339, 812, 1110, 1142
BsaJI CCNNGG 2 cut(s) 148, 1141
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 242, 654
Bse1I ACTGG 1 cut(s) 769
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 148, 1141
BseGI GGATG 2 cut(s) 144, 820
BseLI CCNNNNNNNGG 3 cut(s) 47, 242, 654
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 93, 164, 1145
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 9 cut(s) 165, 243, 377, 408, 458, 715, 890, 971, 1165
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 4 cut(s) 55, 84, 307, 1089
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 5 cut(s) 339, 377, 812, 1110, 1141
BslI CCNNNNNNNGG 3 cut(s) 47, 242, 654
BsmAI GTCTC 1 cut(s) 463
BsnI GGCC 4 cut(s) 55, 84, 307, 1089
BsoBI CYCGRG 1 cut(s) 573
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 4 cut(s) 494, 918, 998, 1017
Bsp1720I GCTNAGC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 393
BspANI GGCC 4 cut(s) 55, 84, 307, 1089
BspCNI CTCAG 3 cut(s) 94, 165, 1146
BspFNI CGCG 1 cut(s) 711
BspHI TCATGA 3 cut(s) 22, 798, 1020
BspLI GGNNCC 5 cut(s) 33, 561, 601, 760, 1150
BspMI ACCTGC 1 cut(s) 736
BspT104I TTCGAA 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 148, 1141
BssMI GATC 4 cut(s) 494, 918, 998, 1017
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 193, 353, 516, 890
Bst6I CTCTTC 3 cut(s) 468, 690, 989
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 141, 369, 1119
BstDEI CTNAG 7 cut(s) 102, 173, 309, 723, 771, 965, 1154
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 144, 820
BstFNI CGCG 1 cut(s) 711
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 4 cut(s) 497, 921, 1001, 1020
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 4 cut(s) 494, 918, 998, 1017
BstMWI GCNNNNNNNGC 6 cut(s) 258, 304, 377, 396, 878, 959
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 337, 810, 1108, 1140
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 9 cut(s) 165, 243, 377, 408, 458, 715, 890, 971, 1165
BsuRI GGCC 4 cut(s) 55, 84, 307, 1089
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 144, 820
BtsI GCAGTG 3 cut(s) 133, 484, 921
BtsIMutI CAGTG 4 cut(s) 133, 484, 762, 921
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 141, 369, 1119
CciI TCATGA 3 cut(s) 22, 798, 1020
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 4 cut(s) 32, 53, 323, 512
CseI GACGC 1 cut(s) 784
Csp6I GTAC 1 cut(s) 349
CviAII CATG 8 cut(s) 23, 65, 140, 149, 284, 290, 799, 1021
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 7 cut(s) 102, 173, 309, 723, 771, 965, 1154
DpnI GATC 4 cut(s) 496, 920, 1000, 1019
DpnII GATC 4 cut(s) 494, 918, 998, 1017
DraIII CACNNNGTG 2 cut(s) 552, 927
EaeI YGGCCR 1 cut(s) 1087
Eam1104I CTCTTC 3 cut(s) 468, 690, 989
EarI CTCTTC 3 cut(s) 468, 690, 989
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 3 cut(s) 32, 323, 512
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 975
Eco88I CYCGRG 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 8 cut(s) 26, 68, 143, 152, 287, 293, 802, 1024
FatI CATG 8 cut(s) 22, 64, 139, 148, 283, 289, 798, 1020
FblI GTMKAC 1 cut(s) 1004
FokI GGATG 2 cut(s) 131, 827
FriOI GRGCYC 1 cut(s) 101
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 507
HaeIII GGCC 4 cut(s) 55, 84, 307, 1089
HapII CCGG 5 cut(s) 339, 377, 812, 1110, 1141
HgaI GACGC 1 cut(s) 784
HhaI GCGC 1 cut(s) 508
Hin1II CATG 8 cut(s) 26, 68, 143, 152, 287, 293, 802, 1024
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 2 cut(s) 751, 1005
HindII GTYRAC 2 cut(s) 751, 1005
HindIII AAGCTT 2 cut(s) 1115, 1133
HinfI GANTC 1 cut(s) 272
HpaII CCGG 5 cut(s) 339, 377, 812, 1110, 1141
HphI GGTGA 3 cut(s) 414, 627, 1042
Hpy166II GTNNAC 5 cut(s) 131, 349, 422, 751, 1005
Hpy188I TCNGA 4 cut(s) 103, 245, 737, 1101
Hpy188III TCNNGA 6 cut(s) 23, 573, 780, 799, 894, 1021
Hpy8I GTNNAC 5 cut(s) 131, 349, 422, 751, 1005
Hpy99I CGWCG 1 cut(s) 1006
HpyAV CCTTC 5 cut(s) 207, 777, 937, 1021, 1135
HpyCH4III ACNGT 4 cut(s) 193, 353, 516, 890
HpyCH4V TGCA 7 cut(s) 215, 231, 371, 526, 745, 872, 940
HpyF10VI GCNNNNNNNGC 6 cut(s) 258, 304, 377, 396, 878, 959
HpyF3I CTNAG 7 cut(s) 102, 173, 309, 723, 771, 965, 1154
Hsp92II CATG 8 cut(s) 26, 68, 143, 152, 287, 293, 802, 1024
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 4 cut(s) 494, 918, 998, 1017
LmnI GCTCC 6 cut(s) 96, 341, 673, 700, 758, 1102
Lsp1109I GCAGC 9 cut(s) 165, 243, 377, 408, 458, 715, 890, 971, 1165
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 501
MalI GATC 4 cut(s) 496, 920, 1000, 1019
MboI GATC 4 cut(s) 494, 918, 998, 1017
MboII GAAGA 9 cut(s) 16, 221, 455, 504, 666, 669, 677, 1006, 1036
MfeI CAATTG 2 cut(s) 327, 414
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 8 cut(s) 75, 327, 358, 406, 414, 521, 834, 983
MmeI TCCRAC 1 cut(s) 74
MseI TTAA 3 cut(s) 843, 1047, 1080
MslI CAYNNNNRTG 3 cut(s) 282, 288, 813
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 5 cut(s) 339, 377, 812, 1110, 1141
MspR9I CCNGG 4 cut(s) 339, 812, 1110, 1142
MunI CAATTG 2 cut(s) 327, 414
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 6 cut(s) 258, 304, 377, 396, 878, 959
NciI CCSGG 4 cut(s) 339, 812, 1110, 1142
NcoI CCATGG 1 cut(s) 148
NdeII GATC 4 cut(s) 494, 918, 998, 1017
NlaIII CATG 8 cut(s) 26, 68, 143, 152, 287, 293, 802, 1024
NlaIV GGNNCC 5 cut(s) 33, 561, 601, 760, 1150
NspI RCATGY 1 cut(s) 143
NspV TTCGAA 1 cut(s) 356
PaeI GCATGC 1 cut(s) 143
PagI TCATGA 3 cut(s) 22, 798, 1020
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 2 cut(s) 337, 1108
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 5 cut(s) 33, 561, 601, 760, 1150
PspPI GGNCC 4 cut(s) 32, 53, 323, 512
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 3 cut(s) 282, 288, 813
SacI GAGCTC 1 cut(s) 101
SalI GTCGAC 1 cut(s) 1003
SaqAI TTAA 3 cut(s) 843, 1047, 1080
Sau3AI GATC 4 cut(s) 494, 918, 998, 1017
Sau96I GGNCC 4 cut(s) 32, 53, 323, 512
ScrFI CCNGG 4 cut(s) 339, 812, 1110, 1142
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 3 cut(s) 32, 323, 512
SmiMI CAYNNNNRTG 3 cut(s) 282, 288, 813
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
SpeI ACTAGT 1 cut(s) 500
SphI GCATGC 1 cut(s) 143
Sse9I AATT 8 cut(s) 75, 327, 358, 406, 414, 521, 834, 983
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 393
SspI AATATT 1 cut(s) 868
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 4 cut(s) 337, 810, 1108, 1140
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 193, 353, 516, 890
TaqI TCGA 3 cut(s) 356, 828, 1004
TasI AATT 8 cut(s) 75, 327, 358, 406, 414, 521, 834, 983
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 843, 1047, 1080
Tru9I TTAA 3 cut(s) 843, 1047, 1080
TscAI CASTG 4 cut(s) 133, 484, 769, 928
TseI GCWGC 9 cut(s) 153, 231, 390, 396, 446, 703, 878, 959, 1178
TspDTI ATGAA 6 cut(s) 17, 53, 815, 899, 995, 1037
TspRI CASTG 4 cut(s) 133, 484, 769, 928
VpaK11BI GGWCC 3 cut(s) 32, 323, 512
XapI RAATTY 2 cut(s) 358, 406
XceI RCATGY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 1004
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.