Rh2DG187100

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015449
Physical Location & Seq
Forward (+)
16710732 .. 16712684
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG187100.1

Sequence Viewer

Length: 1032 bp
ATGAAGAAAGGCTCTGGAGCTTCCCTGGATTTGGGGACACTTCCAGGTCAAAAGGGTTGGAACTCAGAACGAGTGAGGACACTGAGTAATAACAATGGTGGAGGTGGAGGGAGGACTTTGGGTTCGAAATGGGAAGACGCAGAAAGGTGGATTTGCAGCCCAAATCTCGGACTTGGCAAAGACAGAAGCAAGGATATGGATTCTCATGGCCAGAAGAGGAGGCCCAAGTCCAAGAGTGGTCCGATTGTGCCGCCGGGAGCTTTGTACTACTCGAATAATTCACCTACAAATCCAGGTTTTGAAGGTGGAAGTTTAGGGAACTTTGTTACTGGTTCCCCATTCTCAACTGGAGTTTTGGCAGCTGATAGCGTCTGTCTTAACTATGGAGGGATGGGAAGATCAACAAGCCTGCTTGGAATGCCAGAATTCCTGAATGAGAAGTTTGATGATAACAGTAGTGAGGAGCCAATGGTTGCTCGTGCTGTTTCACAAAGAGATATGGGAACCCAAATAAGCCAAAATGCAGAGGGTTGTCTACAGTCATCATCACCAAGGAGAAGGTCATCATTTGCTCCATCTTCTCCCACTCTGGTTTCTATTGTGGAGCAGCAACGTGAACATTTTGCAAGATTAGAGGTCAGAGAAGTGCAGGTAGACAATCGAGTCACCGTTGTTAATGGGTCTAGAGGAGGTGGCGCCGAAAACACCAAGAAAAGTCCACCGGATGTCAATGACTTCGGCAACATTGCTTTTCAGGACATAACTCCATCTTTTCACATTGCAGAAGCAGCAATGAATATATCAAGGTTGCAAAGAGAGGAAGCCAAGATCAGTGCATGGGAGAACTTGCAGAAAGCAAAAGCTGAAGCGGCACTACGAAAACTAGAGGTTCAACTATTTCAGCAATGCTTAGTTCAAACACCATATACGTTTATTCATAGGCACCTTGCTTGCAGTTTCTCTATTTCCTGCACTGCTAGGATAAGTATGAACAAGGATCAAAAGCATTTGAGGTTTCCTTTTATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

343

Amino Acids

37.46

Weight (kDa)

9.22

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 261 - 299 7.1e-10 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 2 cut(s) 695, 942
AccI GTMKAC 2 cut(s) 535, 654
AciI CCGC 2 cut(s) 251, 869
AclWI GGATC 1 cut(s) 1005
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 31, 167
AgsI TTSAA 3 cut(s) 302, 893, 917
AjnI CCWGG 3 cut(s) 24, 43, 292
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 4 cut(s) 20, 260, 362, 863
AluI AGCT 4 cut(s) 20, 260, 362, 863
AlwI GGATC 1 cut(s) 1005
AoxI GGCC 2 cut(s) 208, 221
ApeKI GCWGC 4 cut(s) 156, 359, 607, 788
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 222, 239
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 273, 540, 658
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 2 cut(s) 695, 942
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 4 cut(s) 168, 371, 619, 800
BccI CCATC 3 cut(s) 385, 583, 775
BciT130I CCWGG 3 cut(s) 26, 45, 294
BcnI CCSGG 1 cut(s) 255
BfaI CTAG 3 cut(s) 684, 884, 978
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 699
BfuAI ACCTGC 1 cut(s) 640
BisI GCNGC 6 cut(s) 157, 251, 360, 608, 789, 870
BlsI GCNGC 6 cut(s) 158, 252, 361, 609, 790, 871
Bme1390I CCNGG 4 cut(s) 26, 45, 255, 294
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 222, 239
BmiI GGNNCC 5 cut(s) 334, 465, 505, 697, 944
BmrFI CCNGG 4 cut(s) 26, 45, 255, 294
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 36, 369
Bpu14I TTCGAA 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 24, 551
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 167
Bse1I ACTGG 2 cut(s) 334, 352
Bse3DI GCAATG 4 cut(s) 744, 777, 798, 911
BseBI CCWGG 3 cut(s) 26, 45, 294
BseDI CCNNGG 2 cut(s) 24, 551
BseGI GGATG 2 cut(s) 396, 730
BseLI CCNNNNNNNGG 2 cut(s) 31, 167
BseMI GCAATG 4 cut(s) 744, 777, 798, 911
BseMII CTCAG 2 cut(s) 74, 78
BseNI ACTGG 2 cut(s) 334, 352
BseRI GAGGAG 3 cut(s) 232, 476, 702
BseXI GCAGC 4 cut(s) 168, 371, 619, 800
BsgI GTGCAG 2 cut(s) 668, 955
BshFI GGCC 2 cut(s) 210, 223
BshNI GGYRCC 2 cut(s) 695, 942
BsiSI CCGG 2 cut(s) 254, 722
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 31, 167
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 2 cut(s) 210, 223
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 398, 828, 997
BspACI CCGC 2 cut(s) 251, 869
BspANI GGCC 2 cut(s) 210, 223
BspCNI CTCAG 2 cut(s) 75, 77
BspLI GGNNCC 5 cut(s) 334, 465, 505, 697, 944
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 1 cut(s) 1005
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 695, 942
BsrDI GCAATG 4 cut(s) 744, 777, 798, 911
BsrI ACTGG 2 cut(s) 334, 352
BssECI CCNNGG 2 cut(s) 24, 551
BssMI GATC 3 cut(s) 398, 828, 997
BssNI GRCGYC 1 cut(s) 696
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 26, 45, 294
Bst4CI ACNGT 3 cut(s) 455, 540, 670
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 696
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 410, 952
BstDEI CTNAG 3 cut(s) 64, 83, 910
BstF5I GGATG 2 cut(s) 396, 730
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 3 cut(s) 401, 831, 1000
BstMBI GATC 3 cut(s) 398, 828, 997
BstMWI GCNNNNNNNGC 3 cut(s) 418, 788, 869
BstNI CCWGG 3 cut(s) 26, 45, 294
BstSCI CCNGG 4 cut(s) 24, 43, 253, 292
BstSFI CTRYAG 1 cut(s) 536
BstV1I GCAGC 4 cut(s) 168, 371, 619, 800
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 210, 223
BtsCI GGATG 2 cut(s) 396, 730
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 3 cut(s) 80, 838, 972
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 2 cut(s) 410, 952
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 222, 239
CseI GACGC 2 cut(s) 146, 358
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 206, 837
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 3 cut(s) 64, 83, 910
DinI GGCGCC 1 cut(s) 697
DpnI GATC 3 cut(s) 400, 830, 999
DpnII GATC 3 cut(s) 398, 828, 997
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 24, 43, 292
EcoT14I CCWWGG 1 cut(s) 551
EgeI GGCGCC 1 cut(s) 697
EheI GGCGCC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 2 cut(s) 209, 840
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 205, 836
FblI GTMKAC 2 cut(s) 535, 654
Fnu4HI GCNGC 6 cut(s) 157, 251, 360, 608, 789, 870
FokI GGATG 2 cut(s) 403, 737
Fsp4HI GCNGC 6 cut(s) 157, 251, 360, 608, 789, 870
FspBI CTAG 3 cut(s) 684, 884, 978
GlaI GCGC 1 cut(s) 697
GluI GCNGC 6 cut(s) 157, 251, 360, 608, 789, 870
GsuI CTGGAG 2 cut(s) 36, 369
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 2 cut(s) 210, 223
HapII CCGG 2 cut(s) 254, 722
HgaI GACGC 2 cut(s) 146, 358
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 2 cut(s) 209, 840
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HinfI GANTC 2 cut(s) 200, 663
HpaII CCGG 2 cut(s) 254, 722
HphI GGTGA 3 cut(s) 273, 540, 658
Hpy166II GTNNAC 4 cut(s) 536, 617, 655, 719
Hpy188I TCNGA 4 cut(s) 67, 170, 243, 641
Hpy188III TCNNGA 4 cut(s) 15, 430, 684, 755
Hpy8I GTNNAC 4 cut(s) 536, 617, 655, 719
HpyAV CCTTC 2 cut(s) 296, 552
HpyCH4III ACNGT 3 cut(s) 455, 540, 670
HpyCH4IV ACGT 2 cut(s) 613, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 418, 788, 869
HpyF3I CTNAG 3 cut(s) 64, 83, 910
HpySE526I ACGT 2 cut(s) 613, 929
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 2 cut(s) 209, 840
HspAI GCGC 1 cut(s) 696
KasI GGCGCC 1 cut(s) 695
Kzo9I GATC 3 cut(s) 398, 828, 997
LmnI GCTCC 5 cut(s) 17, 257, 463, 577, 604
Lsp1109I GCAGC 4 cut(s) 168, 371, 619, 800
MaeI CTAG 3 cut(s) 684, 884, 978
MaeII ACGT 2 cut(s) 613, 929
MaeIII GTNAC 2 cut(s) 325, 664
MalI GATC 3 cut(s) 400, 830, 999
MboI GATC 3 cut(s) 398, 828, 997
MboII GAAGA 5 cut(s) 16, 146, 226, 408, 570
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 2 cut(s) 277, 425
MluNI TGGCCA 1 cut(s) 210
Mly113I GGCGCC 1 cut(s) 696
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 2 cut(s) 378, 675
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 254, 722
MspR9I CCNGG 4 cut(s) 26, 45, 255, 294
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 3 cut(s) 26, 45, 294
MwoI GCNNNNNNNGC 3 cut(s) 418, 788, 869
NarI GGCGCC 1 cut(s) 696
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 398, 828, 997
NlaIII CATG 2 cut(s) 209, 840
NlaIV GGNNCC 5 cut(s) 334, 465, 505, 697, 944
NmuCI GTSAC 1 cut(s) 664
NspV TTCGAA 1 cut(s) 125
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 6 cut(s) 158, 252, 361, 609, 790, 871
PleI GAGTC 1 cut(s) 671
PluTI GGCGCC 1 cut(s) 699
PpsI GAGTC 1 cut(s) 671
Psp6I CCWGG 3 cut(s) 24, 43, 292
PspGI CCWGG 3 cut(s) 24, 43, 292
PspN4I GGNNCC 5 cut(s) 334, 465, 505, 697, 944
PspPI GGNCC 2 cut(s) 222, 239
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 378, 675
SatI GCNGC 6 cut(s) 157, 251, 360, 608, 789, 870
Sau3AI GATC 3 cut(s) 398, 828, 997
Sau96I GGNCC 2 cut(s) 222, 239
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 4 cut(s) 26, 45, 255, 294
SfcI CTRYAG 1 cut(s) 536
SfoI GGCGCC 1 cut(s) 697
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 277, 425
SsiI CCGC 2 cut(s) 251, 869
SspDI GGCGCC 1 cut(s) 695
SspMI CTAG 3 cut(s) 684, 884, 978
StyD4I CCNGG 4 cut(s) 24, 43, 253, 292
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 455, 540, 670
TaiI ACGT 2 cut(s) 616, 932
TaqI TCGA 3 cut(s) 125, 272, 661
TasI AATT 2 cut(s) 277, 425
TatI WGTACW 1 cut(s) 264
TauI GCSGC 2 cut(s) 253, 872
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 378, 675
Tru9I TTAA 2 cut(s) 378, 675
TscAI CASTG 3 cut(s) 87, 838, 979
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 4 cut(s) 156, 359, 607, 788
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 4 cut(s) 17, 809, 926, 1004
TspRI CASTG 3 cut(s) 87, 838, 979
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 683
XmiI GTMKAC 2 cut(s) 535, 654
XspI CTAG 3 cut(s) 684, 884, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.