Rw2G014160

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015449
Physical Location & Seq
Forward (+)
15717048 .. 15718555
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014160.1

Sequence Viewer

Length: 1101 bp
ATGAAGAAAGGCTCTGGAGCTTCCCTGGATTTGGGGACACTTCCAGGTCAAAAGGGTTGGAACTCAGAACGAGTGAGGACACTGAGTAATAACAATGGTGGAGGTGGAGGTGGAGGGAGGACTTTGGGTTCGAAATGGGAAGATGCAGAAAGGTGGATTTGCAGCCCAAATCTCGGACTTGGCAAAGACAGAAGCAAGGATATGGATTCTCATGGCCAGAAGAGGAGGCCCAAGTCCAAGAGTGGTCCGATTGTGCCGCCGGGAGCTTTGTACTACTCAAATAATTCACCTACTAATCCAGATTTTGAAGGTGGAAGTTTAGGGAACTTTGTTACTGGTTCCCCATTCTCAACTGGAGTTTTGGCAGCTGAAAGCGTCTGTCTTAACTATGGAGGGATGGGAAGATCAACAAGCCTGCTTGGAATGCCAGAATTCCTGAATGAGAAGTTTGATGATAACAGTAGTGAGGAGCCAATGGTTGCTCGTGCTGTTTCACAAAGAGATATGGGAACCCAAATAAGCCAAAATGCAGAGGGTTGTCTACAGTCATCATCACCAAGGAGAAGGTCATCATTTGCTCCATCTTCTCCCACTCTGGTTTCTATTGTGGAGCAGCAACGTGAACATTTTGCAAGATTAGAGGTCAGAGAAGTGCAGGTAGACAATCGAGTCACCGTTGTTAATGGGTCTAGAGGAGGTGGCGCCGAAAACACCAAGAAAAGTCCACCGGATGTCAATGACTTCGGCAACATTGCTTTTCAGGACATAACTCCATCTTTTAACATTGCAGAAGCAGCAATGAATATATCAAGGTTGCAAAGAGAGGAAGCCAAGATCAGTGCATGGGAGAACTTGCAGAAAGCAAAAGCTGAAGCGGCACTACGAAAACTAGAGATGACATTGGAAAAGAAGAAATCGTCAACAATGGATAAGATTATGAAGAAGCTGAGCAAAGCACAAGTTAAAGCCAATAAGATGAGAAGCTCAATGGCAGTAGGAGACAGCCATCAACTTGCCGAAACTCCAAGCAAGGCTCGTTCGTTTAGTAAGAGTGTCCGAATAGGTTTGCTGCGGAGGTGCTTTACCTGCAATGCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

366

Amino Acids

39.6

Weight (kDa)

9.68

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 263 - 351 6.9e-21 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 646, 1094
AccB1I GGYRCC 1 cut(s) 701
AccI GTMKAC 2 cut(s) 541, 660
AciI CCGC 3 cut(s) 257, 875, 1072
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 31, 173
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 2 cut(s) 24, 43
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 6 cut(s) 20, 266, 368, 869, 946, 984
AluI AGCT 6 cut(s) 20, 266, 368, 869, 946, 984
Alw26I GTCTC 1 cut(s) 993
AoxI GGCC 2 cut(s) 214, 227
ApeKI GCWGC 5 cut(s) 162, 365, 613, 794, 1069
ApoI RAATTY 1 cut(s) 431
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 2 cut(s) 228, 245
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 279, 546, 664
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 216
BanI GGYRCC 1 cut(s) 701
BarI GAAGNNNNNNTAC 2 cut(s) 864, 896
BauI CACGAG 1 cut(s) 483
BbvI GCAGC 5 cut(s) 174, 377, 625, 806, 1056
BccI CCATC 4 cut(s) 391, 589, 781, 1014
BciT130I CCWGG 2 cut(s) 26, 45
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 993
BfaI CTAG 2 cut(s) 690, 890
BfmI CTRYAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 2 cut(s) 646, 1094
BisI GCNGC 7 cut(s) 163, 257, 366, 614, 795, 876, 1070
BlpI GCTNAGC 1 cut(s) 947
BlsI GCNGC 7 cut(s) 164, 258, 367, 615, 796, 877, 1071
Bme1390I CCNGG 3 cut(s) 26, 45, 261
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 228, 245
BmiI GGNNCC 4 cut(s) 340, 471, 511, 703
BmrFI CCNGG 3 cut(s) 26, 45, 261
BmsI GCATC 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 36, 375
Bpu1102I GCTNAGC 1 cut(s) 947
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 24, 557
BsaWI WCCGGW 1 cut(s) 727
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 173
Bse1I ACTGG 2 cut(s) 340, 358
Bse3DI GCAATG 4 cut(s) 750, 783, 804, 1096
BseBI CCWGG 2 cut(s) 26, 45
BseDI CCNNGG 2 cut(s) 24, 557
BseGI GGATG 2 cut(s) 402, 736
BseLI CCNNNNNNNGG 2 cut(s) 31, 173
BseMI GCAATG 4 cut(s) 750, 783, 804, 1096
BseMII CTCAG 3 cut(s) 74, 78, 938
BseNI ACTGG 2 cut(s) 340, 358
BseRI GAGGAG 3 cut(s) 238, 482, 708
BseXI GCAGC 5 cut(s) 174, 377, 625, 806, 1056
BsgI GTGCAG 1 cut(s) 674
BshFI GGCC 2 cut(s) 216, 229
BshNI GGYRCC 1 cut(s) 701
BsiSI CCGG 2 cut(s) 260, 728
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 31, 173
BsmAI GTCTC 1 cut(s) 993
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 2 cut(s) 216, 229
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 2 cut(s) 404, 834
Bsp1720I GCTNAGC 1 cut(s) 947
BspACI CCGC 3 cut(s) 257, 875, 1072
BspANI GGCC 2 cut(s) 216, 229
BspCNI CTCAG 3 cut(s) 75, 77, 939
BspLI GGNNCC 4 cut(s) 340, 471, 511, 703
BspMI ACCTGC 2 cut(s) 646, 1094
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 701
BsrDI GCAATG 4 cut(s) 750, 783, 804, 1096
BsrI ACTGG 2 cut(s) 340, 358
BssECI CCNNGG 2 cut(s) 24, 557
BssMI GATC 2 cut(s) 404, 834
BssNI GRCGYC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 26, 45
Bst4CI ACNGT 3 cut(s) 461, 546, 676
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 702
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 64, 83, 947
BstF5I GGATG 2 cut(s) 402, 736
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 2 cut(s) 407, 837
BstMAI GTCTC 1 cut(s) 993
BstMBI GATC 2 cut(s) 404, 834
BstMWI GCNNNNNNNGC 4 cut(s) 424, 794, 875, 1086
BstNI CCWGG 2 cut(s) 26, 45
BstSCI CCNGG 3 cut(s) 24, 43, 259
BstSFI CTRYAG 1 cut(s) 542
BstV1I GCAGC 5 cut(s) 174, 377, 625, 806, 1056
BsuRI GGCC 2 cut(s) 216, 229
BtsCI GGATG 2 cut(s) 402, 736
BtsIMutI CAGTG 2 cut(s) 80, 844
BveI ACCTGC 2 cut(s) 646, 1094
Cac8I GCNNGC 1 cut(s) 416
CfoI GCGC 1 cut(s) 704
Cfr13I GGNCC 2 cut(s) 228, 245
CseI GACGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 271
CviAII CATG 2 cut(s) 212, 843
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 3 cut(s) 64, 83, 947
DinI GGCGCC 1 cut(s) 703
DpnI GATC 2 cut(s) 406, 836
DpnII GATC 2 cut(s) 404, 834
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 891
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 24, 43
EcoT14I CCWWGG 1 cut(s) 557
EgeI GGCGCC 1 cut(s) 703
EheI GGCGCC 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 2 cut(s) 215, 846
FaiI YATR 8 cut(s) 203, 213, 390, 506, 767, 806, 844, 938
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 211, 842
FblI GTMKAC 2 cut(s) 541, 660
Fnu4HI GCNGC 7 cut(s) 163, 257, 366, 614, 795, 876, 1070
FokI GGATG 2 cut(s) 409, 743
Fsp4HI GCNGC 7 cut(s) 163, 257, 366, 614, 795, 876, 1070
FspBI CTAG 2 cut(s) 690, 890
GlaI GCGC 1 cut(s) 703
GluI GCNGC 7 cut(s) 163, 257, 366, 614, 795, 876, 1070
GsuI CTGGAG 2 cut(s) 36, 375
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 2 cut(s) 216, 229
HapII CCGG 2 cut(s) 260, 728
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 704
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 2 cut(s) 215, 846
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 2 cut(s) 206, 669
HpaII CCGG 2 cut(s) 260, 728
HphI GGTGA 3 cut(s) 279, 546, 664
Hpy166II GTNNAC 5 cut(s) 542, 623, 661, 725, 921
Hpy188I TCNGA 5 cut(s) 67, 176, 249, 647, 1058
Hpy188III TCNNGA 5 cut(s) 15, 299, 436, 690, 761
Hpy8I GTNNAC 5 cut(s) 542, 623, 661, 725, 921
HpyAV CCTTC 2 cut(s) 302, 558
HpyCH4III ACNGT 3 cut(s) 461, 546, 676
HpyCH4IV ACGT 1 cut(s) 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 794, 875, 1086
HpyF3I CTNAG 3 cut(s) 64, 83, 947
HpySE526I ACGT 1 cut(s) 619
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 2 cut(s) 215, 846
HspAI GCGC 1 cut(s) 702
KasI GGCGCC 1 cut(s) 701
Kzo9I GATC 2 cut(s) 404, 834
LmnI GCTCC 5 cut(s) 17, 263, 469, 583, 610
Lsp1109I GCAGC 5 cut(s) 174, 377, 625, 806, 1056
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 690, 890
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 2 cut(s) 331, 670
MalI GATC 2 cut(s) 406, 836
MboI GATC 2 cut(s) 404, 834
MboII GAAGA 7 cut(s) 16, 152, 232, 414, 576, 922, 952
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 2 cut(s) 283, 431
MluNI TGGCCA 1 cut(s) 216
Mly113I GGCGCC 1 cut(s) 702
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 5 cut(s) 384, 681, 780, 963, 1099
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 2 cut(s) 260, 728
MspR9I CCNGG 3 cut(s) 26, 45, 261
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 26, 45
MwoI GCNNNNNNNGC 4 cut(s) 424, 794, 875, 1086
NarI GGCGCC 1 cut(s) 702
NciI CCSGG 1 cut(s) 261
NdeII GATC 2 cut(s) 404, 834
NlaIII CATG 2 cut(s) 215, 846
NlaIV GGNNCC 4 cut(s) 340, 471, 511, 703
NmuCI GTSAC 1 cut(s) 670
NspV TTCGAA 1 cut(s) 131
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 7 cut(s) 164, 258, 367, 615, 796, 877, 1071
PleI GAGTC 1 cut(s) 677
PluTI GGCGCC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 24, 43
PspGI CCWGG 2 cut(s) 24, 43
PspN4I GGNNCC 4 cut(s) 340, 471, 511, 703
PspPI GGNCC 2 cut(s) 228, 245
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 5 cut(s) 384, 681, 780, 963, 1099
SatI GCNGC 7 cut(s) 163, 257, 366, 614, 795, 876, 1070
Sau3AI GATC 2 cut(s) 404, 834
Sau96I GGNCC 2 cut(s) 228, 245
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 3 cut(s) 26, 45, 261
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 542
SfoI GGCGCC 1 cut(s) 703
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 245
Sse9I AATT 2 cut(s) 283, 431
SsiI CCGC 3 cut(s) 257, 875, 1072
SspDI GGCGCC 1 cut(s) 701
SspMI CTAG 2 cut(s) 690, 890
StyD4I CCNGG 3 cut(s) 24, 43, 259
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 3 cut(s) 461, 546, 676
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 131, 667
TasI AATT 2 cut(s) 283, 431
TatI WGTACW 1 cut(s) 270
TauI GCSGC 2 cut(s) 259, 878
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 5 cut(s) 384, 681, 780, 963, 1099
Tru9I TTAA 5 cut(s) 384, 681, 780, 963, 1099
TscAI CASTG 2 cut(s) 87, 844
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 5 cut(s) 162, 365, 613, 794, 1069
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 3 cut(s) 17, 815, 953
TspRI CASTG 2 cut(s) 87, 844
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 689
XmiI GTMKAC 2 cut(s) 541, 660
XspI CTAG 2 cut(s) 690, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.