MD02G1172500.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015449
Physical Location & Seq
Forward (+)
15075037 .. 15077293
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1172500.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGAATAGAGGTTCTGTTTCTCATGATTTGGGTTTATTTCCAACCCTAGGAGTATCCGATTATCGCGGTAATGGAATTGGAGGCCAAAAGGGTTGGAGCTCGGAGCGTGTGCCGTTGCCGACAAGTAGTGGACAGAGGCATATCGTCAATGGGAACACTTCTTTGATGGGGTTGAGTAATGGTGGGAGGACTATGCCTTCAAAATGGGAGGATGCTGAGAGGTGGATTTGCAGCCCCGTGATCGGATATGGGGAGAGCAACAAGAGCTCACATTCTCAGGATCAGAAGAGGAGGCCTAAGTCCAAGAGTGGTCCAATTGCGCCTCCTTCTGGGGTTGTACACTACTCAAACTATTCGCCTGCAAATCCAGCATTTGATGGTGGCATTGTGAGAAATTTCATGATTGGTTCGCCATTCTCAACGGGAATTTTGGCTGCTGATAGTGTCTCTCTTCTCTATGGTGGGAGTGGAGGAACGGGAAGATTAAGTAGTGTGCTTGGATTGTCTGAATTGCAAAATGAGAAACTGGATACAAAAAAGTCTGAGAAGCCGGGAATTCCTCGAGCTGTTTCGCAACGAGACATGGCAACCCAAATAAGCCCGAAGGGCAGCCTCCACTCACCACCACCTCCTAATAGGAGGTCATCATTTGCTCCATCGTCTCCGAATCTCATTTCCATTGTGGAGCAGCAGCACGACCATTTTGCCAAATTGGAGGTCAGGGAAGTGCGGGTAGACAATGGAACCAATGTTACTATGGGGTCTAGAACTAGAAGACGTGGAAGCAACACGAAAGGACCCCCGGATGTTTATGATTTCGACAAAATTGCTATCGAAAATCAAGCTTCATCTTTTGATGTTGCAGATGAAGCTATGAACATTTCAAGGTGGCAAAGAGAGGAAGCCAAGATCACTGCATGGGAAAACTTGCAGAAGGCAAAAGCTGAAGCAGCATTAAGAAAACTCGAGATGAAATTGGAAAAGAAGAGATCGTCGACGATGGATAAGATCACGAAGAATTTGAGAAATGCACAGGTTAAAGCTCACAAAATGAGAAGCTCAGTGCCAACGAAAGACAACCAGCAAGCTCCCAAAACTTCCGAGAAGGCTCGTTCCTTCGGTAGACATGTTCGGATGGGTTCCCTACGCAGTTGCTTCACCTGTGATGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

392

Amino Acids

42.66

Weight (kDa)

10.0

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 279 - 376 3.1e-23 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 735, 995, 1123
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 66, 730
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 4 cut(s) 394, 426, 555, 1018
AcuI CTGAAG 1 cut(s) 966
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 3 cut(s) 47, 242, 329
AflIII ACRYGT 1 cut(s) 1126
AgsI TTSAA 2 cut(s) 201, 885
AjiI CACGTC 1 cut(s) 779
AluBI AGCT 9 cut(s) 99, 267, 566, 845, 872, 944, 1043, 1059, 1088
AluI AGCT 9 cut(s) 99, 267, 566, 845, 872, 944, 1043, 1059, 1088
Alw21I GWGCWC 2 cut(s) 101, 269
Alw26I GTCTC 3 cut(s) 451, 573, 666
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 2 cut(s) 561, 965
AoxI GGCC 2 cut(s) 82, 293
ApeKI GCWGC 6 cut(s) 231, 434, 609, 688, 691, 950
ApoI RAATTY 4 cut(s) 394, 426, 555, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 311, 797
AsuC2I CCSGG 2 cut(s) 552, 803
AsuHPI GGTGA 2 cut(s) 612, 1150
AvaI CYCGRG 2 cut(s) 561, 965
AvaII GGWCC 2 cut(s) 311, 797
AvrII CCTAGG 1 cut(s) 46
BanII GRGCYC 2 cut(s) 101, 269
BbsI GAAGAC 1 cut(s) 781
Bbv12I GWGCWC 2 cut(s) 101, 269
BbvI GCAGC 6 cut(s) 243, 421, 621, 700, 703, 962
BccI CCATC 5 cut(s) 160, 371, 664, 994, 1129
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 4 cut(s) 686, 720, 809, 843
BciVI GTATCC 2 cut(s) 64, 523
BcnI CCSGG 2 cut(s) 552, 803
BcoDI GTCTC 3 cut(s) 451, 573, 666
BfaI CTAG 3 cut(s) 47, 765, 771
BfuI GTATCC 2 cut(s) 64, 523
BglI GCCNNNNNGGC 1 cut(s) 606
BisI GCNGC 6 cut(s) 232, 435, 610, 689, 692, 951
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 6 cut(s) 233, 436, 611, 690, 693, 952
Bme1390I CCNGG 2 cut(s) 552, 803
Bme18I GGWCC 2 cut(s) 311, 797
BmeT110I CYCGRG 2 cut(s) 561, 965
BmgBI CACGTC 1 cut(s) 779
BmgT120I GGNCC 2 cut(s) 311, 797
BmiI GGNNCC 3 cut(s) 745, 799, 1141
BmrFI CCNGG 2 cut(s) 552, 803
BmsI GCATC 2 cut(s) 202, 1156
BpiI GAAGAC 1 cut(s) 781
BpuMI CCSGG 2 cut(s) 552, 803
BsaJI CCNNGG 2 cut(s) 46, 801
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 242, 329
Bse1I ACTGG 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 46, 801
BseGI GGATG 3 cut(s) 217, 811, 1140
BseLI CCNNNNNNNGG 3 cut(s) 47, 242, 329
BseMII CTCAG 4 cut(s) 207, 290, 534, 1074
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 6 cut(s) 243, 421, 621, 700, 703, 962
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 84, 295
BsiHKAI GWGCWC 2 cut(s) 101, 269
BsiHKCI CYCGRG 2 cut(s) 561, 965
BsiSI CCGG 2 cut(s) 551, 803
BslI CCNNNNNNNGG 3 cut(s) 47, 242, 329
BsmAI GTCTC 3 cut(s) 451, 573, 666
BsmBI CGTCTC 1 cut(s) 666
BsnI GGCC 2 cut(s) 84, 295
BsoBI CYCGRG 2 cut(s) 561, 965
Bsp1286I GDGCHC 2 cut(s) 101, 269
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 5 cut(s) 240, 280, 909, 989, 1008
BspACI CCGC 2 cut(s) 66, 730
BspANI GGCC 2 cut(s) 84, 295
BspCNI CTCAG 4 cut(s) 208, 289, 535, 1073
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 22, 399
BspLI GGNNCC 3 cut(s) 745, 799, 1141
BspPI GGATC 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 46, 801
BssMI GATC 5 cut(s) 240, 280, 909, 989, 1008
BssT1I CCWWGG 1 cut(s) 46
Bst6I CTCTTC 3 cut(s) 281, 456, 980
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 360, 1086
BstDEI CTNAG 5 cut(s) 216, 276, 297, 543, 1060
BstF5I GGATG 3 cut(s) 217, 811, 1140
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 243, 283, 912, 992, 1011
BstMAI GTCTC 3 cut(s) 451, 573, 666
BstMBI GATC 5 cut(s) 240, 280, 909, 989, 1008
BstMWI GCNNNNNNNGC 5 cut(s) 264, 368, 606, 869, 950
BstNSI RCATGY 1 cut(s) 1130
BstSCI CCNGG 2 cut(s) 550, 801
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 6 cut(s) 243, 421, 621, 700, 703, 962
BstV2I GAAGAC 1 cut(s) 781
BsuI GTATCC 2 cut(s) 64, 523
BsuRI GGCC 2 cut(s) 84, 295
BtrI CACGTC 1 cut(s) 779
BtsCI GGATG 3 cut(s) 217, 811, 1140
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 2 cut(s) 912, 1068
Cac8I GCNNGC 2 cut(s) 360, 1086
CciI TCATGA 2 cut(s) 22, 399
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 311, 797
Csp6I GTAC 1 cut(s) 338
CviAII CATG 5 cut(s) 23, 400, 583, 918, 1127
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 5 cut(s) 216, 276, 297, 543, 1060
DpnI GATC 5 cut(s) 242, 282, 911, 991, 1010
DpnII GATC 5 cut(s) 240, 280, 909, 989, 1008
Eam1104I CTCTTC 3 cut(s) 281, 456, 980
EarI CTCTTC 3 cut(s) 281, 456, 980
Ecl136II GAGCTC 2 cut(s) 99, 267
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 101, 269
Eco47I GGWCC 2 cut(s) 311, 797
Eco53kI GAGCTC 2 cut(s) 99, 267
Eco57I CTGAAG 1 cut(s) 966
Eco88I CYCGRG 2 cut(s) 561, 965
EcoICRI GAGCTC 2 cut(s) 99, 267
EcoO109I RGGNCCY 1 cut(s) 797
EcoRI GAATTC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 2 cut(s) 101, 269
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 5 cut(s) 26, 403, 586, 921, 1130
FatI CATG 5 cut(s) 22, 399, 582, 917, 1126
FauI CCCGC 1 cut(s) 723
FblI GTMKAC 3 cut(s) 735, 995, 1123
Fnu4HI GCNGC 6 cut(s) 232, 435, 610, 689, 692, 951
FokI GGATG 3 cut(s) 224, 818, 1147
FriOI GRGCYC 2 cut(s) 101, 269
Fsp4HI GCNGC 6 cut(s) 232, 435, 610, 689, 692, 951
FspBI CTAG 3 cut(s) 47, 765, 771
GlaI GCGC 1 cut(s) 321
GluI GCNGC 6 cut(s) 232, 435, 610, 689, 692, 951
HaeIII GGCC 2 cut(s) 84, 295
HapII CCGG 2 cut(s) 551, 803
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 26, 403, 586, 921, 1130
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 996
HindII GTYRAC 1 cut(s) 996
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 1 cut(s) 667
HpaII CCGG 2 cut(s) 551, 803
HphI GGTGA 2 cut(s) 612, 1150
Hpy166II GTNNAC 5 cut(s) 131, 340, 736, 996, 1124
Hpy188I TCNGA 9 cut(s) 58, 103, 245, 285, 508, 544, 666, 1102, 1134
Hpy188III TCNNGA 6 cut(s) 23, 278, 400, 765, 967, 1012
Hpy8I GTNNAC 5 cut(s) 131, 340, 736, 996, 1124
Hpy99I CGWCG 2 cut(s) 997, 1000
HpyAV CCTTC 6 cut(s) 207, 336, 598, 928, 1099, 1126
HpyCH4IV ACGT 1 cut(s) 778
HpyCH4V TGCA 7 cut(s) 231, 362, 514, 863, 917, 931, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 264, 368, 606, 869, 950
HpyF3I CTNAG 5 cut(s) 216, 276, 297, 543, 1060
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 5 cut(s) 26, 403, 586, 921, 1130
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 5 cut(s) 240, 280, 909, 989, 1008
LmnI GCTCC 5 cut(s) 96, 103, 658, 685, 1093
Lsp1109I GCAGC 6 cut(s) 243, 421, 621, 700, 703, 962
LweI GCATC 2 cut(s) 202, 1156
MaeI CTAG 3 cut(s) 47, 765, 771
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 1 cut(s) 751
MalI GATC 5 cut(s) 242, 282, 911, 991, 1010
MboI GATC 5 cut(s) 240, 280, 909, 989, 1008
MboII GAAGA 6 cut(s) 298, 443, 492, 786, 997, 1027
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 101, 269
MmeI TCCRAC 2 cut(s) 65, 74
MseI TTAA 3 cut(s) 485, 956, 1038
MspI CCGG 2 cut(s) 551, 803
MspR9I CCNGG 2 cut(s) 552, 803
MunI CAATTG 1 cut(s) 315
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 5 cut(s) 264, 368, 606, 869, 950
NciI CCSGG 2 cut(s) 552, 803
NdeII GATC 5 cut(s) 240, 280, 909, 989, 1008
NlaIII CATG 5 cut(s) 26, 403, 586, 921, 1130
NlaIV GGNNCC 3 cut(s) 745, 799, 1141
NspI RCATGY 1 cut(s) 1130
PaeR7I CTCGAG 2 cut(s) 561, 965
PagI TCATGA 2 cut(s) 22, 399
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 1 cut(s) 1126
PfeI GAWTC 1 cut(s) 667
PkrI GCNGC 6 cut(s) 233, 436, 611, 690, 693, 952
PpuMI RGGWCCY 1 cut(s) 797
PscI ACATGT 1 cut(s) 1126
Psp124BI GAGCTC 2 cut(s) 101, 269
Psp5II RGGWCCY 1 cut(s) 797
PspN4I GGNNCC 3 cut(s) 745, 799, 1141
PspPI GGNCC 2 cut(s) 311, 797
PspPPI RGGWCCY 1 cut(s) 797
PspXI VCTCGAGB 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 736, 768
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SacI GAGCTC 2 cut(s) 101, 269
SalI GTCGAC 1 cut(s) 994
SaqAI TTAA 3 cut(s) 485, 956, 1038
SatI GCNGC 6 cut(s) 232, 435, 610, 689, 692, 951
Sau3AI GATC 5 cut(s) 240, 280, 909, 989, 1008
Sau96I GGNCC 2 cut(s) 311, 797
ScrFI CCNGG 2 cut(s) 552, 803
SduI GDGCHC 2 cut(s) 101, 269
SfaNI GCATC 2 cut(s) 202, 1156
Sfr274I CTCGAG 2 cut(s) 561, 965
SgrDI CGTCGACG 1 cut(s) 994
SinI GGWCC 2 cut(s) 311, 797
SlaI CTCGAG 2 cut(s) 561, 965
SmlI CTYRAG 2 cut(s) 561, 965
SmoI CTYRAG 2 cut(s) 561, 965
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 2 cut(s) 66, 730
SspMI CTAG 3 cut(s) 47, 765, 771
SstI GAGCTC 2 cut(s) 101, 269
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 550, 801
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 781
TaqI TCGA 5 cut(s) 562, 819, 834, 966, 995
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 3 cut(s) 485, 956, 1038
Tru9I TTAA 3 cut(s) 485, 956, 1038
TscAI CASTG 2 cut(s) 919, 1068
TseI GCWGC 6 cut(s) 231, 434, 609, 688, 691, 950
TspDTI ATGAA 6 cut(s) 17, 388, 837, 882, 890, 986
TspRI CASTG 2 cut(s) 919, 1068
VpaK11BI GGWCC 2 cut(s) 311, 797
XapI RAATTY 4 cut(s) 394, 426, 555, 1018
XbaI TCTAGA 1 cut(s) 764
XceI RCATGY 1 cut(s) 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XhoI CTCGAG 2 cut(s) 561, 965
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 3 cut(s) 735, 995, 1123
XspI CTAG 3 cut(s) 47, 765, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.