Rroxscaffold_2G00137960

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015449
Physical Location & Seq
Reverse (-)
75951767 .. 75953506
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137960.1

Sequence Viewer

Length: 1095 bp
ATGAAGAAAGGCTCTGGAGCTTCCCTGGATTTGGGGAGACTTCCAGGTCAAAAGGGTTGGAACTCAGAACGAGTGAGGACACTGAGTAATAACAATGGTGGATGTGGAGGGAGGACTTTGGGTTCGAAATGGGAAGATGCAGAAAGGTGGATTTGCAGCCCAAATCTCGGACTTGGCAACGACAGAAGCAAGGATATGGATTCTCATGGCCAGAAGAGGAGGCCCAAGTCCAAGAGTGGTCCGATTGTGCCGCCGGGAGCTTTATACTACTCGAATATTTCACCTACAAATCCAGGTTTTGAAGGTGGAAGTTTAAGGAACTTTGTTACTGGTTCCCCATTCTCAACTGGAGTTCTGGCAGCTGATAGCGTCTGTCTTAACTATGGAGGAATGGGAAGATCAACAAGCCTGCTTGGAATGCCAGAATTCCTGAATGAGAAGTTTGATGATAACAGTAGTGAGGAGCCAATGGTTGCTCGTGCTGTTTCACAAAGAGATATGGGAACCCAAATAAGCCAAAATGCAGAGGGTTGTCTACAGTCATCATCTCCAAGGAGAAGGTCATCATTTGCTCCATCTTCTCCCACTCTGGTTTCTATTGTGGAGCAGCAACGTGACCATTTTGCAAGATTAGAGGTCAGAGAAGTGCAGGTAGACAATCGAGTCACTGTTGTTAAGGGGTCTAGAGGAGGTGGCGCCGAAAGCACCAAGAAAAGTCCACCGGATGCCAATGACTTCGGCAACATGGCTTTTCAGGACCAAACTCCATCTTTTAACATTGCAGAAGCAGCAATGAATATATCAAGGTTGCAAAGAGAGGAAGCCAAGATCAGTGCATGGGAGAACTTGCAGAAAGCAAAAGCTGAAGCGGCACTACGAAAACTAGAGATGAAATTGGAAAAGAAGAAATCGTCAACAATGGATAAGATTATGAAGAAGCTGAGCAAAGCACAAGTTAAAGCCAACAAGATGAGAAGCTCAATGGCAGTAGGAGACAGCCATCAACTTGCCGAAACTCCAATCAAGGCTCGTTCGTTTAGTAAGCGTGTCCGAATAGGTTTGCTGCGGAGGTGCTTTACCTGCAATGCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

364

Amino Acids

39.7

Weight (kDa)

9.89

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 260 - 349 5.3e-21 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 45, 662
Acc36I ACCTGC 2 cut(s) 640, 1088
AccB1I GGYRCC 1 cut(s) 695
AccI GTMKAC 2 cut(s) 535, 654
AciI CCGC 3 cut(s) 251, 869, 1066
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 696
AfiI CCNNNNNNNGG 2 cut(s) 31, 167
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 3 cut(s) 24, 43, 292
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 6 cut(s) 20, 260, 362, 863, 940, 978
AluI AGCT 6 cut(s) 20, 260, 362, 863, 940, 978
Alw26I GTCTC 2 cut(s) 31, 987
AoxI GGCC 2 cut(s) 208, 221
ApeKI GCWGC 5 cut(s) 156, 359, 607, 788, 1063
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 3 cut(s) 222, 239, 757
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 239, 757
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 695
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BauI CACGAG 1 cut(s) 477
BbvI GCAGC 5 cut(s) 168, 371, 619, 800, 1050
BccI CCATC 3 cut(s) 583, 775, 1008
BciT130I CCWGG 3 cut(s) 26, 45, 294
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 31, 987
BfaI CTAG 2 cut(s) 684, 884
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 699
BfuAI ACCTGC 2 cut(s) 640, 1088
BisI GCNGC 7 cut(s) 157, 251, 360, 608, 789, 870, 1064
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 7 cut(s) 158, 252, 361, 609, 790, 871, 1065
Bme1390I CCNGG 4 cut(s) 26, 45, 255, 294
Bme18I GGWCC 2 cut(s) 239, 757
BmgT120I GGNCC 3 cut(s) 222, 239, 757
BmiI GGNNCC 4 cut(s) 334, 465, 505, 697
BmrFI CCNGG 4 cut(s) 26, 45, 255, 294
BmsI GCATC 2 cut(s) 127, 715
BpmI CTGGAG 2 cut(s) 36, 369
Bpu1102I GCTNAGC 1 cut(s) 941
Bpu14I TTCGAA 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 24, 551
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 167
Bse1I ACTGG 2 cut(s) 334, 352
Bse3DI GCAATG 3 cut(s) 777, 798, 1090
BseBI CCWGG 3 cut(s) 26, 45, 294
BseDI CCNNGG 2 cut(s) 24, 551
BseGI GGATG 2 cut(s) 107, 730
BseLI CCNNNNNNNGG 2 cut(s) 31, 167
BseMI GCAATG 3 cut(s) 777, 798, 1090
BseMII CTCAG 3 cut(s) 74, 78, 932
BseNI ACTGG 2 cut(s) 334, 352
BseRI GAGGAG 3 cut(s) 232, 476, 702
BseXI GCAGC 5 cut(s) 168, 371, 619, 800, 1050
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 2 cut(s) 210, 223
BshNI GGYRCC 1 cut(s) 695
BsiSI CCGG 2 cut(s) 254, 722
BslI CCNNNNNNNGG 2 cut(s) 31, 167
BsmAI GTCTC 2 cut(s) 31, 987
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 2 cut(s) 210, 223
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 2 cut(s) 398, 828
Bsp1720I GCTNAGC 1 cut(s) 941
BspACI CCGC 3 cut(s) 251, 869, 1066
BspANI GGCC 2 cut(s) 210, 223
BspCNI CTCAG 3 cut(s) 75, 77, 933
BspLI GGNNCC 4 cut(s) 334, 465, 505, 697
BspMI ACCTGC 2 cut(s) 640, 1088
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 695
BsrDI GCAATG 3 cut(s) 777, 798, 1090
BsrI ACTGG 2 cut(s) 334, 352
BssECI CCNNGG 2 cut(s) 24, 551
BssMI GATC 2 cut(s) 398, 828
BssNI GRCGYC 1 cut(s) 696
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 26, 45, 294
Bst4CI ACNGT 3 cut(s) 455, 540, 670
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 696
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 3 cut(s) 64, 83, 941
BstF5I GGATG 2 cut(s) 107, 730
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 2 cut(s) 401, 831
BstMAI GTCTC 2 cut(s) 31, 987
BstMBI GATC 2 cut(s) 398, 828
BstMWI GCNNNNNNNGC 5 cut(s) 418, 702, 788, 869, 1080
BstNI CCWGG 3 cut(s) 26, 45, 294
BstSCI CCNGG 4 cut(s) 24, 43, 253, 292
BstSFI CTRYAG 1 cut(s) 536
BstV1I GCAGC 5 cut(s) 168, 371, 619, 800, 1050
BsuRI GGCC 2 cut(s) 210, 223
BtsCI GGATG 2 cut(s) 107, 730
BtsIMutI CAGTG 3 cut(s) 80, 666, 838
BveI ACCTGC 2 cut(s) 640, 1088
Cac8I GCNNGC 1 cut(s) 410
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 3 cut(s) 222, 239, 757
CseI GACGC 1 cut(s) 358
CviAII CATG 3 cut(s) 206, 745, 837
DdeI CTNAG 3 cut(s) 64, 83, 941
DinI GGCGCC 1 cut(s) 697
DpnI GATC 2 cut(s) 400, 830
DpnII GATC 2 cut(s) 398, 828
DrdI GACNNNNNNGTC 2 cut(s) 45, 662
DseDI GACNNNNNNGTC 2 cut(s) 45, 662
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 239, 757
Eco57I CTGAAG 1 cut(s) 885
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 24, 43, 292
EcoT14I CCWWGG 1 cut(s) 551
EgeI GGCGCC 1 cut(s) 697
EheI GGCGCC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 3 cut(s) 209, 748, 840
FaiI YATR 9 cut(s) 197, 207, 265, 384, 500, 746, 800, 838, 932
FatI CATG 3 cut(s) 205, 744, 836
FblI GTMKAC 2 cut(s) 535, 654
Fnu4HI GCNGC 7 cut(s) 157, 251, 360, 608, 789, 870, 1064
FokI GGATG 2 cut(s) 114, 737
Fsp4HI GCNGC 7 cut(s) 157, 251, 360, 608, 789, 870, 1064
FspBI CTAG 2 cut(s) 684, 884
GlaI GCGC 1 cut(s) 697
GluI GCNGC 7 cut(s) 157, 251, 360, 608, 789, 870, 1064
GsuI CTGGAG 2 cut(s) 36, 369
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 2 cut(s) 210, 223
HapII CCGG 2 cut(s) 254, 722
HgaI GACGC 1 cut(s) 358
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 3 cut(s) 209, 748, 840
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HinfI GANTC 2 cut(s) 200, 663
HpaII CCGG 2 cut(s) 254, 722
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 4 cut(s) 536, 655, 719, 915
Hpy188I TCNGA 5 cut(s) 67, 170, 243, 641, 1052
Hpy188III TCNNGA 4 cut(s) 15, 430, 684, 755
Hpy8I GTNNAC 4 cut(s) 536, 655, 719, 915
HpyAV CCTTC 2 cut(s) 296, 552
HpyCH4III ACNGT 3 cut(s) 455, 540, 670
HpyCH4IV ACGT 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 418, 702, 788, 869, 1080
HpyF3I CTNAG 3 cut(s) 64, 83, 941
HpySE526I ACGT 1 cut(s) 613
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 3 cut(s) 209, 748, 840
HspAI GCGC 1 cut(s) 696
KasI GGCGCC 1 cut(s) 695
Kzo9I GATC 2 cut(s) 398, 828
LmnI GCTCC 5 cut(s) 17, 257, 463, 577, 604
Lsp1109I GCAGC 5 cut(s) 168, 371, 619, 800, 1050
LweI GCATC 2 cut(s) 127, 715
MaeI CTAG 2 cut(s) 684, 884
MaeII ACGT 1 cut(s) 613
MaeIII GTNAC 3 cut(s) 325, 614, 664
MalI GATC 2 cut(s) 400, 830
MboI GATC 2 cut(s) 398, 828
MboII GAAGA 7 cut(s) 16, 146, 226, 408, 570, 916, 946
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 2 cut(s) 425, 893
MluNI TGGCCA 1 cut(s) 210
Mly113I GGCGCC 1 cut(s) 696
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 6 cut(s) 314, 378, 675, 774, 957, 1093
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 254, 722
MspR9I CCNGG 4 cut(s) 26, 45, 255, 294
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 3 cut(s) 26, 45, 294
MwoI GCNNNNNNNGC 5 cut(s) 418, 702, 788, 869, 1080
NarI GGCGCC 1 cut(s) 696
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 398, 828
NlaIII CATG 3 cut(s) 209, 748, 840
NlaIV GGNNCC 4 cut(s) 334, 465, 505, 697
NmuCI GTSAC 2 cut(s) 614, 664
NspV TTCGAA 1 cut(s) 125
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 7 cut(s) 158, 252, 361, 609, 790, 871, 1065
PleI GAGTC 1 cut(s) 671
PluTI GGCGCC 1 cut(s) 699
PpsI GAGTC 1 cut(s) 671
Psp6I CCWGG 3 cut(s) 24, 43, 292
PspGI CCWGG 3 cut(s) 24, 43, 292
PspN4I GGNNCC 4 cut(s) 334, 465, 505, 697
PspPI GGNCC 3 cut(s) 222, 239, 757
PvuII CAGCTG 1 cut(s) 362
SaqAI TTAA 6 cut(s) 314, 378, 675, 774, 957, 1093
SatI GCNGC 7 cut(s) 157, 251, 360, 608, 789, 870, 1064
Sau3AI GATC 2 cut(s) 398, 828
Sau96I GGNCC 3 cut(s) 222, 239, 757
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 4 cut(s) 26, 45, 255, 294
SfaNI GCATC 2 cut(s) 127, 715
SfcI CTRYAG 1 cut(s) 536
SfoI GGCGCC 1 cut(s) 697
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 2 cut(s) 239, 757
Sse9I AATT 2 cut(s) 425, 893
SsiI CCGC 3 cut(s) 251, 869, 1066
SspDI GGCGCC 1 cut(s) 695
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 684, 884
StyD4I CCNGG 4 cut(s) 24, 43, 253, 292
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 455, 540, 670
TaiI ACGT 1 cut(s) 616
TaqI TCGA 3 cut(s) 125, 272, 661
TasI AATT 2 cut(s) 425, 893
TauI GCSGC 2 cut(s) 253, 872
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 6 cut(s) 314, 378, 675, 774, 957, 1093
Tru9I TTAA 6 cut(s) 314, 378, 675, 774, 957, 1093
TscAI CASTG 3 cut(s) 87, 673, 838
TseFI GTSAC 2 cut(s) 614, 664
TseI GCWGC 5 cut(s) 156, 359, 607, 788, 1063
Tsp45I GTSAC 2 cut(s) 614, 664
TspDTI ATGAA 4 cut(s) 17, 809, 905, 947
TspRI CASTG 3 cut(s) 87, 673, 838
VpaK11BI GGWCC 2 cut(s) 239, 757
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 683
XmiI GTMKAC 2 cut(s) 535, 654
XspI CTAG 2 cut(s) 684, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.