FvH4_1g16090

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015449
Physical Location & Seq
Forward (+)
9195550 .. 9197674
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16090.t1

Sequence Viewer

Length: 1083 bp
ATGAAGAAAGGCTCTGGTGCTTCCCTGGATTTGGGGACACTTCCAGGCCAGAAGGGTTGGAACTCAGAACGAGTGAGGACGTTGAGTAACAATGTTGGAGGAAGGACTTTGGGTTCTAAATGGGAAGATGCAGAGAGGTGGATTTGCAGCCCAAATCTCGGACTTAGAGATGAAAGAAGCAAGGATTTGGACTGTCATGGCCAGAAGAGGAGGCCTAAGTCCAAGAGTGGTCCGATTGTGCCGCCGGGAGCTTTGTACTACTCGAATAACTCACCTACGAATCCAGGATTTGAAGGTGGAAGTCTAAGGAACTTTGTTACTGGTTCTCCATTCTCAACTGGAGTTTTGGCAGCTGATAGTGTGTGTCTTAACTATGGAGGAATGGGAAGCTCAACAAGCCTGCTTGGAATGCCAGAATTTCAGAATGAGAAGTTTGATGATAGCAGTAGTGAGGAGCCAATGGTTGCTCGTGCTGTTTCACAAAGAGATATGGGAACCCAAATAAGCCAAAACACTAAGAGTTGTCTACAGCCATCACCAAGGAGAAGGTCATCATTTGCTCCATCTTCTCCGACTCTGGTTTCTATTGTGGAGCAGCAACGTGAACATTTTGCTAGATTAGAGGTCAGAGAAGTGCAGGTAGACAATCGAGTTATTGTTGTTAAAGGGTCTAAAGGAGGTGTCGCCGAAAGCACCAAGAAAAGTCCCCCGGATGTCAATGACTTCGGCAACATTGCATTTCAAGACCAAACTCCGACTTTTAACATTGCAGAGGCAGTTATGAACACCTCAAGGTTGCAGAGAGAGGAAGCCAAGATCAATGCATGGGAGAACTTGCAGAAAGCAAAAGCTGAAGCAGCAATGCGAAAACTAGAGATGAAACTGGAAAAGAAGAAATCATCAACAATCGATAAGATCATGAAGAAGCTGAGCCAGGCACAAGTTAAAGCCAACAAGATGAGAAGCTCCATGGCAGTTAGCAACGGCGGTCAAGTTCCGGAAACTCCACGCAAGGCTTGTTCCTTTAGCAAGCGTATCCGAACGGGTTCACTGCGGAGGTTCTTTACCTGCAATGCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

361

Amino Acids

39.5

Weight (kDa)

9.86

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 257 - 345 2.8e-21 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36970
fragaria_vesca FvH4_1g16090 FvH4_1g16090
malus_domestica MD02G1172500.v1.1
prunus_persica Prupe.7G133000_v2.0.a1
pyrus_communis pycom02g13900
rosa_chinensis RchiOBHm_Chr2g0105711
rosa_laevigata RLG00000017452
rosa_multiflora Rmu_sc0001051.1_g000060
rosa_roxburghii Rroxscaffold_2G00137960
rosa_rugosa Rorug02G0129700
rosa_samantha Rh2AG181100 Rh2BG190200 Rh2CG185300 Rh2DG187100
rosa_wichuraiana Rw2G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 628, 1076
AccI GTMKAC 2 cut(s) 526, 642
AccIII TCCGGA 1 cut(s) 997
AciI CCGC 3 cut(s) 242, 987, 1054
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 31, 158
AgsI TTSAA 2 cut(s) 293, 743
AjnI CCWGG 4 cut(s) 24, 43, 283, 933
AloI GAACNNNNNNTCC 2 cut(s) 97, 129
AluBI AGCT 6 cut(s) 251, 353, 390, 851, 928, 966
AluI AGCT 6 cut(s) 251, 353, 390, 851, 928, 966
Aor13HI TCCGGA 1 cut(s) 997
AoxI GGCC 3 cut(s) 46, 199, 212
ApeKI GCWGC 4 cut(s) 147, 350, 595, 857
ApoI RAATTY 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 1045
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 246, 710
AsuHPI GGTGA 2 cut(s) 264, 528
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 201
BauI CACGAG 1 cut(s) 468
BbvI GCAGC 4 cut(s) 159, 362, 607, 869
BccI CCATC 2 cut(s) 541, 571
BceAI ACGGC 1 cut(s) 1000
BciT130I CCWGG 4 cut(s) 26, 45, 285, 935
BciVI GTATCC 1 cut(s) 1046
BcnI CCSGG 2 cut(s) 246, 710
BfaI CTAG 2 cut(s) 615, 872
BfmI CTRYAG 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 628, 1076
BfuI GTATCC 1 cut(s) 1046
BisI GCNGC 5 cut(s) 148, 242, 351, 596, 858
BlpI GCTNAGC 1 cut(s) 929
BlsI GCNGC 5 cut(s) 149, 243, 352, 597, 859
Bme1390I CCNGG 6 cut(s) 26, 45, 246, 285, 710, 935
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 456, 496
BmrFI CCNGG 6 cut(s) 26, 45, 246, 285, 710, 935
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 929
BpuEI CTTGAG 1 cut(s) 775
BpuMI CCSGG 2 cut(s) 246, 710
Bsa29I ATCGAT 1 cut(s) 909
BsaJI CCNNGG 4 cut(s) 24, 539, 708, 969
BsaWI WCCGGW 1 cut(s) 997
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 158
Bse1I ACTGG 3 cut(s) 325, 343, 888
Bse3DI GCAATG 4 cut(s) 732, 765, 867, 1078
BseAI TCCGGA 1 cut(s) 997
BseBI CCWGG 4 cut(s) 26, 45, 285, 935
BseCI ATCGAT 1 cut(s) 909
BseDI CCNNGG 4 cut(s) 24, 539, 708, 969
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 2 cut(s) 31, 158
BseMI GCAATG 4 cut(s) 732, 765, 867, 1078
BseMII CTCAG 2 cut(s) 78, 920
BseNI ACTGG 3 cut(s) 325, 343, 888
BseRI GAGGAG 2 cut(s) 223, 467
BseXI GCAGC 4 cut(s) 159, 362, 607, 869
BsgI GTGCAG 1 cut(s) 656
BshFI GGCC 3 cut(s) 48, 201, 214
BshVI ATCGAT 1 cut(s) 909
BsiSI CCGG 3 cut(s) 245, 710, 998
BslFI GGGAC 2 cut(s) 49, 690
BslI CCNNNNNNNGG 2 cut(s) 31, 158
BsmFI GGGAC 2 cut(s) 49, 690
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 3 cut(s) 48, 201, 214
Bsp13I TCCGGA 1 cut(s) 997
Bsp143I GATC 2 cut(s) 816, 915
Bsp1720I GCTNAGC 1 cut(s) 929
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 3 cut(s) 242, 987, 1054
BspANI GGCC 3 cut(s) 48, 201, 214
BspCNI CTCAG 2 cut(s) 77, 921
BspDI ATCGAT 1 cut(s) 909
BspEI TCCGGA 1 cut(s) 997
BspHI TCATGA 1 cut(s) 918
BspLI GGNNCC 2 cut(s) 456, 496
BspMI ACCTGC 2 cut(s) 628, 1076
BsrDI GCAATG 4 cut(s) 732, 765, 867, 1078
BsrI ACTGG 3 cut(s) 325, 343, 888
BssECI CCNNGG 4 cut(s) 24, 539, 708, 969
BssMI GATC 2 cut(s) 816, 915
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 539, 969
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 4 cut(s) 26, 45, 285, 935
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 401, 1031
BstDEI CTNAG 6 cut(s) 64, 164, 216, 305, 516, 929
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 1 cut(s) 718
BstKTI GATC 2 cut(s) 819, 918
BstMBI GATC 2 cut(s) 816, 915
BstMWI GCNNNNNNNGC 3 cut(s) 396, 409, 857
BstNI CCWGG 4 cut(s) 26, 45, 285, 935
BstSCI CCNGG 6 cut(s) 24, 43, 244, 283, 708, 933
BstSFI CTRYAG 1 cut(s) 527
BstV1I GCAGC 4 cut(s) 159, 362, 607, 869
Bsu15I ATCGAT 1 cut(s) 909
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 3 cut(s) 48, 201, 214
BsuTUI ATCGAT 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 1 cut(s) 1049
BveI ACCTGC 2 cut(s) 628, 1076
Cac8I GCNNGC 2 cut(s) 401, 1031
CciI TCATGA 1 cut(s) 918
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 909
Csp6I GTAC 1 cut(s) 256
CviAII CATG 4 cut(s) 197, 825, 919, 970
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 6 cut(s) 64, 164, 216, 305, 516, 929
DpnI GATC 2 cut(s) 818, 917
DpnII GATC 2 cut(s) 816, 915
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 539, 969
Eco147I AGGCCT 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 873
EcoRII CCWGG 4 cut(s) 24, 43, 283, 933
EcoT14I CCWWGG 2 cut(s) 539, 969
EcoT22I ATGCAT 1 cut(s) 826
ErhI CCWWGG 2 cut(s) 539, 969
FaeI CATG 4 cut(s) 200, 828, 922, 973
FaiI YATR 7 cut(s) 198, 375, 491, 782, 826, 920, 971
FaqI GGGAC 2 cut(s) 49, 690
FatI CATG 4 cut(s) 196, 824, 918, 969
FblI GTMKAC 2 cut(s) 526, 642
Fnu4HI GCNGC 5 cut(s) 148, 242, 351, 596, 858
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 5 cut(s) 148, 242, 351, 596, 858
FspBI CTAG 2 cut(s) 615, 872
GluI GCNGC 5 cut(s) 148, 242, 351, 596, 858
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 48, 201, 214
HapII CCGG 3 cut(s) 245, 710, 998
Hin1II CATG 4 cut(s) 200, 828, 922, 973
HinfI GANTC 2 cut(s) 280, 574
HpaII CCGG 3 cut(s) 245, 710, 998
HphI GGTGA 2 cut(s) 264, 528
Hpy166II GTNNAC 4 cut(s) 527, 605, 643, 1049
Hpy188I TCNGA 8 cut(s) 67, 161, 234, 423, 573, 629, 756, 1040
Hpy188III TCNNGA 3 cut(s) 743, 919, 998
Hpy8I GTNNAC 4 cut(s) 527, 605, 643, 1049
HpyAV CCTTC 4 cut(s) 46, 96, 287, 540
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 2 cut(s) 80, 601
HpyCH4V TGCA 9 cut(s) 131, 147, 637, 737, 770, 799, 824, 838, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 409, 857
HpyF3I CTNAG 6 cut(s) 64, 164, 216, 305, 516, 929
HpySE526I ACGT 2 cut(s) 80, 601
Hsp92II CATG 4 cut(s) 200, 828, 922, 973
Kpn2I TCCGGA 1 cut(s) 997
Kzo9I GATC 2 cut(s) 816, 915
LmnI GCTCC 5 cut(s) 248, 454, 565, 592, 971
Lsp1109I GCAGC 4 cut(s) 159, 362, 607, 869
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 615, 872
MaeII ACGT 2 cut(s) 80, 601
MaeIII GTNAC 2 cut(s) 86, 316
MalI GATC 2 cut(s) 818, 917
MboI GATC 2 cut(s) 816, 915
MboII GAAGA 6 cut(s) 16, 137, 217, 558, 904, 934
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 416
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 4 cut(s) 38, 76, 596, 779
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 826
MroI TCCGGA 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 1045
MscI TGGCCA 1 cut(s) 201
MseI TTAA 4 cut(s) 369, 663, 762, 945
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 3 cut(s) 245, 710, 998
MspR9I CCNGG 6 cut(s) 26, 45, 246, 285, 710, 935
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 4 cut(s) 26, 45, 285, 935
MwoI GCNNNNNNNGC 3 cut(s) 396, 409, 857
NciI CCSGG 2 cut(s) 246, 710
NcoI CCATGG 1 cut(s) 969
NdeII GATC 2 cut(s) 816, 915
NlaIII CATG 4 cut(s) 200, 828, 922, 973
NlaIV GGNNCC 2 cut(s) 456, 496
NsiI ATGCAT 1 cut(s) 826
PagI TCATGA 1 cut(s) 918
PceI AGGCCT 1 cut(s) 214
PctI GAATGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 1045
PfeI GAWTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 5 cut(s) 149, 243, 352, 597, 859
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp6I CCWGG 4 cut(s) 24, 43, 283, 933
PspGI CCWGG 4 cut(s) 24, 43, 283, 933
PspN4I GGNNCC 2 cut(s) 456, 496
PspPI GGNCC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 4 cut(s) 369, 663, 762, 945
SatI GCNGC 5 cut(s) 148, 242, 351, 596, 858
Sau3AI GATC 2 cut(s) 816, 915
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 6 cut(s) 26, 45, 246, 285, 710, 935
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
Sse9I AATT 1 cut(s) 416
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 3 cut(s) 242, 987, 1054
SspMI CTAG 2 cut(s) 615, 872
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 6 cut(s) 24, 43, 244, 283, 708, 933
StyI CCWWGG 2 cut(s) 539, 969
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 2 cut(s) 83, 604
TaqI TCGA 3 cut(s) 263, 649, 909
TasI AATT 1 cut(s) 416
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 4 cut(s) 369, 663, 762, 945
Tru9I TTAA 4 cut(s) 369, 663, 762, 945
TscAI CASTG 1 cut(s) 1056
TseI GCWGC 4 cut(s) 147, 350, 595, 857
TspDTI ATGAA 5 cut(s) 17, 186, 797, 893, 935
TspRI CASTG 1 cut(s) 1056
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 416
XmiI GTMKAC 2 cut(s) 526, 642
XmnI GAANNNNTTC 1 cut(s) 1045
XspI CTAG 2 cut(s) 615, 872
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.