AT4G37300

Maternal effect embryo arrest 59

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012315
Physical Location & Seq
Forward (+)
17554493 .. 17556048
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37300.1

Sequence Viewer

Length: 522 bp
ATGAGTACGATGAAGCCAAGCCGGAGCGACGAAATATCCGACCCGGAACAGCAGATCAAGAACGCGAACCAGATCAGAGCTGATTTCGATTCCTTGGCTCCCAAACGACCCACTAAACCCACTCGAAGCGAACCGGGATTTCCTGGATCTTTCTCTGCTTCCGACAAAATCACCGACCATCCTGAAGCTGACAAATTCCAATCTCTCCAGTCACAAACTCATGGTAAAGTTCTAGGTGAGGGAGATTCATCTGCAGTTCAAGATGAGTTCCTGGAAACAGAGTATTACTCAAATCTCACCGCCATTGATAAGCAACATCACACGACCGGAAGTGGGTTTATAAATGTGGTGAAGGAAGACAACGGTGAAGAATCCGAGGCCGTAACCGCCGCCGCAATCGGAGACGGAGGAGAAAAAGCGGTTTACAGAAGCAATCCGGCGACGAACGAATGGATTCCTGCGACGGAGGAAGATTTTGATTCGGAATCTTCGTCTAAACCAAACCGGAGCGAGAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

4.57

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37300
fragaria_vesca FvH4_1g16910 FvH4_1g16910
malus_domestica MD02G1179600.v1.1
prunus_persica Prupe.6G227700_v2.0.a1 Prupe.6G227700_v2.0.a1
pyrus_communis pycom02g14560
rosa_chinensis RchiOBHm_Chr2g0106961
rosa_laevigata RLG00000017546
rosa_multiflora Rmu_co8001210.1_g000001 Rmu_sc0004344.1_g000020
rosa_roxburghii Rroxscaffold_2G00136710
rosa_rugosa Rorug02G0139500 Rorug02G0139600
rosa_samantha Rh2AG190600 Rh2BG202100 Rh2CG195100 Rh2DG197300
rosa_wichuraiana Rw2G015020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccII CGCG 1 cut(s) 65
AciI CCGC 5 cut(s) 300, 387, 390, 393, 419
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 2 cut(s) 142, 270
AloI GAACNNNNNNTCC 1 cut(s) 499
AluBI AGCT 2 cut(s) 80, 188
AluI AGCT 2 cut(s) 80, 188
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 453
AsuC2I CCSGG 2 cut(s) 44, 135
AsuHPI GGTGA 5 cut(s) 163, 248, 289, 361, 377
BbsI GAAGAC 1 cut(s) 363
BccI CCATC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 144, 272
BcnI CCSGG 2 cut(s) 44, 135
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 2 cut(s) 390, 393
BlsI GCNGC 2 cut(s) 391, 394
Bme1390I CCNGG 4 cut(s) 44, 135, 144, 272
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 4 cut(s) 44, 135, 144, 272
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 44, 135
BsaJI CCNNGG 2 cut(s) 93, 375
BsaWI WCCGGW 2 cut(s) 326, 504
BsaXI ACNNNNNCTCC 1 cut(s) 499
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 144, 272
BseDI CCNNGG 2 cut(s) 93, 375
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 6 cut(s) 22, 44, 134, 327, 437, 505
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 396
BsmBI CGTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 54, 72, 146
BspACI CCGC 5 cut(s) 300, 387, 390, 393, 419
BspANI GGCC 1 cut(s) 380
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 93, 375
BssMI GATC 3 cut(s) 54, 72, 146
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 144, 272
Bst4CI ACNGT 1 cut(s) 365
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 57, 75, 149
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 3 cut(s) 54, 72, 146
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 144, 272
BstSCI CCNGG 4 cut(s) 42, 133, 142, 270
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 221
CviJI RGCY 6 cut(s) 16, 21, 80, 98, 188, 380
CviKI_1 RGCY 6 cut(s) 16, 21, 80, 98, 188, 380
CviQI GTAC 1 cut(s) 6
DpnI GATC 3 cut(s) 56, 74, 148
DpnII GATC 3 cut(s) 54, 72, 146
Eco130I CCWWGG 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 142, 270
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 222, 341
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 390, 393
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 390, 393
FspBI CTAG 1 cut(s) 233
GluI GCNGC 2 cut(s) 390, 393
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 380
HapII CCGG 6 cut(s) 22, 44, 134, 327, 437, 505
Hin1II CATG 1 cut(s) 224
HinfI GANTC 6 cut(s) 89, 245, 371, 454, 479, 485
HpaII CCGG 6 cut(s) 22, 44, 134, 327, 437, 505
HphI GGTGA 5 cut(s) 163, 248, 289, 361, 377
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 6 cut(s) 40, 77, 163, 376, 401, 484
Hpy188III TCNNGA 4 cut(s) 58, 182, 260, 519
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 3 cut(s) 32, 445, 466
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 3 cut(s) 54, 72, 146
LmnI GCTCC 3 cut(s) 24, 103, 507
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 210, 382
MalI GATC 3 cut(s) 56, 74, 148
MboI GATC 3 cut(s) 54, 72, 146
MboII GAAGA 4 cut(s) 368, 380, 480, 482
MflI RGATCY 1 cut(s) 146
MluCI AATT 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 63, 186
MnlI CCTC 4 cut(s) 232, 370, 401, 460
MroXI GAANNNNTTC 1 cut(s) 453
MspI CCGG 6 cut(s) 22, 44, 134, 327, 437, 505
MspR9I CCNGG 4 cut(s) 44, 135, 144, 272
MvaI CCWGG 2 cut(s) 144, 272
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 386
NciI CCSGG 2 cut(s) 44, 135
NdeII GATC 3 cut(s) 54, 72, 146
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 488
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 6 cut(s) 89, 245, 371, 454, 479, 485
PfoI TCCNGGA 2 cut(s) 142, 270
PkrI GCNGC 2 cut(s) 391, 394
PsiI TTATAA 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 142, 270
PspGI CCWGG 2 cut(s) 142, 270
PspN4I GGNNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 2 cut(s) 390, 393
Sau3AI GATC 3 cut(s) 54, 72, 146
ScrFI CCNGG 4 cut(s) 44, 135, 144, 272
SetI ASST 3 cut(s) 82, 190, 238
SfcI CTRYAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 194
SsiI CCGC 5 cut(s) 300, 387, 390, 393, 419
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 42, 133, 142, 270
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 87, 124
TasI AATT 1 cut(s) 194
TauI GCSGC 2 cut(s) 392, 395
TfiI GAWTC 6 cut(s) 89, 245, 371, 454, 479, 485
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 26, 237
TspGWI ACGGA 2 cut(s) 420, 479
XapI RAATTY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.