Prupe.6G227700_v2.0.a1

Maternal effect embryo arrest 59

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
23175806 .. 23176923
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G227700.1

Sequence Viewer

Length: 558 bp
ATGGTGGGGCACAGGACGGCGACAAAGCCAAGCCGGAGCGACGAGGTGTTGGAAGCTGATGAGCAGCTCAAGATCGCCAACCAGATCAGAGCTCAGTTCGACTCTGCAGCCCCAAAGCGACCCATCAAGCCAAATAGAAGCGAGCCCGATTCTTCATCATCATCATCAACACCAAACCCAGTTGACTATTCCATCGTTGACCAACCCAACATTCCAGAGCTCGACAAGTTTCGTTCTCTCCAATCTCAATCCCCTGTTATACTCTCATCAGCAGAGGGAGCTACCACAGTACAAGATGAGTTTGTGGACACACAGTACTACAAGGAACTTAATTCCATTGACAAACAACATCACATGACTGGAAGTGGGTTTATTAAGGTTGTAAGAGAAGGGGGAAGTGACTTTGATCTTCAGCTGGCTGAGAGCCATGATGATGTCATAGTGGGATTGATGAAGATCAGAAGCAACCCTGCAACAAATGACTGGGTTCCCAGGACTGATGAAGATGAGGTCTTTGTTAACCCCTCAAAGCCAAATCGGAGTGAGAGCTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.56

Weight (kDa)

4.83

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012315)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 2 cut(s) 291, 317
AjnI CCWGG 1 cut(s) 491
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 7 cut(s) 56, 67, 92, 220, 281, 415, 549
AluI AGCT 7 cut(s) 56, 67, 92, 220, 281, 415, 549
Alw21I GWGCWC 3 cut(s) 94, 222, 551
ApeKI GCWGC 2 cut(s) 64, 107
BaeGI GKGCMC 1 cut(s) 12
BanII GRGCYC 4 cut(s) 94, 147, 222, 551
Bbv12I GWGCWC 3 cut(s) 94, 222, 551
BbvI GCAGC 2 cut(s) 76, 119
BccI CCATC 2 cut(s) 131, 200
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 493
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 65, 108
BlsI GCNGC 2 cut(s) 66, 109
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 493
BmrI ACTGGG 2 cut(s) 173, 493
BmuI ACTGGG 2 cut(s) 173, 493
BpuEI CTTGAG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 491
Bse1I ACTGG 3 cut(s) 179, 364, 488
Bse8I GATNNNNATC 1 cut(s) 455
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 491
BseJI GATNNNNATC 1 cut(s) 455
BseMII CTCAG 2 cut(s) 107, 411
BseNI ACTGG 3 cut(s) 179, 364, 488
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 2 cut(s) 76, 119
BsiHKAI GWGCWC 3 cut(s) 94, 222, 551
BsiSI CCGG 1 cut(s) 34
Bsp1286I GDGCHC 5 cut(s) 12, 94, 147, 222, 551
Bsp143I GATC 4 cut(s) 72, 84, 406, 456
BspCNI CTCAG 2 cut(s) 106, 412
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 109
BsrI ACTGG 3 cut(s) 179, 364, 488
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 4 cut(s) 72, 84, 406, 456
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 2 cut(s) 289, 315
BstC8I GCNNGC 2 cut(s) 143, 417
BstDEI CTNAG 2 cut(s) 93, 420
BstKTI GATC 4 cut(s) 75, 87, 409, 459
BstMBI GATC 4 cut(s) 72, 84, 406, 456
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 76, 119
Cac8I GCNNGC 2 cut(s) 143, 417
Csp6I GTAC 2 cut(s) 290, 316
CviAII CATG 2 cut(s) 355, 428
CviQI GTAC 2 cut(s) 290, 316
DdeI CTNAG 2 cut(s) 93, 420
DpnI GATC 4 cut(s) 74, 86, 408, 458
DpnII GATC 4 cut(s) 72, 84, 406, 456
Ecl136II GAGCTC 3 cut(s) 92, 220, 549
Eco24I GRGCYC 4 cut(s) 94, 147, 222, 551
Eco53kI GAGCTC 3 cut(s) 92, 220, 549
Eco57I CTGAAG 1 cut(s) 395
EcoICRI GAGCTC 3 cut(s) 92, 220, 549
EcoRII CCWGG 1 cut(s) 491
EcoT38I GRGCYC 4 cut(s) 94, 147, 222, 551
FaeI CATG 2 cut(s) 358, 431
FaiI YATR 4 cut(s) 260, 356, 429, 440
FatI CATG 2 cut(s) 354, 427
Fnu4HI GCNGC 2 cut(s) 65, 108
FriOI GRGCYC 4 cut(s) 94, 147, 222, 551
Fsp4HI GCNGC 2 cut(s) 65, 108
GluI GCNGC 2 cut(s) 65, 108
HapII CCGG 1 cut(s) 34
Hin1II CATG 2 cut(s) 358, 431
HincII GTYRAC 3 cut(s) 184, 199, 520
HindII GTYRAC 3 cut(s) 184, 199, 520
HinfI GANTC 2 cut(s) 101, 149
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 4 cut(s) 184, 199, 307, 520
Hpy188I TCNGA 3 cut(s) 89, 461, 540
Hpy188III TCNNGA 2 cut(s) 70, 215
Hpy8I GTNNAC 4 cut(s) 184, 199, 307, 520
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 289, 315
HpyCH4V TGCA 2 cut(s) 107, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 93, 420
Hsp92II CATG 2 cut(s) 358, 431
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 72, 84, 406, 456
LmnI GCTCC 2 cut(s) 36, 278
Lsp1109I GCAGC 2 cut(s) 76, 119
MaeIII GTNAC 1 cut(s) 398
MalI GATC 4 cut(s) 74, 86, 408, 458
MboI GATC 4 cut(s) 72, 84, 406, 456
MboII GAAGA 4 cut(s) 144, 401, 466, 515
MhlI GDGCHC 5 cut(s) 12, 94, 147, 222, 551
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 37, 268, 502, 535
MseI TTAA 3 cut(s) 330, 375, 519
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 493
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 4 cut(s) 72, 84, 406, 456
NlaIII CATG 2 cut(s) 358, 431
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 66, 109
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp124BI GAGCTC 3 cut(s) 94, 222, 551
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 291, 317
RsaNI GTAC 2 cut(s) 290, 316
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 3 cut(s) 94, 222, 551
SaqAI TTAA 3 cut(s) 330, 375, 519
SatI GCNGC 2 cut(s) 65, 108
Sau3AI GATC 4 cut(s) 72, 84, 406, 456
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 493
SduI GDGCHC 5 cut(s) 12, 94, 147, 222, 551
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 331
SstI GAGCTC 3 cut(s) 94, 222, 551
StyD4I CCNGG 1 cut(s) 491
TaaI ACNGT 2 cut(s) 289, 315
TaqI TCGA 2 cut(s) 99, 222
TasI AATT 1 cut(s) 331
TatI WGTACW 2 cut(s) 289, 315
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 330, 375, 519
Tru9I TTAA 3 cut(s) 330, 375, 519
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 64, 107
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 144, 467, 516
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.