FvH4_1g16910

Maternal effect embryo arrest 59

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012315
Physical Location & Seq
Forward (+)
9786009 .. 9787420
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16910.t2

Sequence Viewer

Length: 531 bp
ATGGTGGGTCAGTCGACGGTGACAAAGCCCAGCCGGAGCGACCACGTTTTGGATGCCGACGAACAGCTCAGGATCTCCACCCAGATCAAAGCTCAGTTCGAATCTGCTGCCCCAAAGCGACCCATGAAGCCGAATCGAAGCGAACCCGATTCCCCAACTCCAGCTCTCTCCATCGTTGACCAACCCAACATTCCTGAGCTTCACAAGCTTCGTACTCTTCAGTCTCAGTCCCATGTCATAATCTCAGATGAGGGAGCTAACAGCTTGGTACAAGATGAGTTTGTGGATACCCAATATTACAAGGAGCTGAATTCCATTGACAAACAGCATCACATGACTGGAACTGGGTTTATAAGGGTGGAGAGGGAAGAAGAGGGAAGCAATGATATTCAGTTGACTGGAATTCACGGCGGTTCAAATGGTATAGTGCGGGCTGGTTTCAGAAGCAACCCTGCAACCAATGACTGGATTCCCAAGACTGATGAAGATCTGGTCTTCATCTCCTCAAAGCCAAATCGAAGTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.59

Weight (kDa)

5.34

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012315)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37300
fragaria_vesca FvH4_1g16910 FvH4_1g16910
malus_domestica MD02G1179600.v1.1
prunus_persica Prupe.6G227700_v2.0.a1 Prupe.6G227700_v2.0.a1
pyrus_communis pycom02g14560
rosa_chinensis RchiOBHm_Chr2g0106961
rosa_laevigata RLG00000017546
rosa_multiflora Rmu_co8001210.1_g000001 Rmu_sc0004344.1_g000020
rosa_roxburghii Rroxscaffold_2G00136710
rosa_rugosa Rorug02G0139500 Rorug02G0139600
rosa_samantha Rh2AG190600 Rh2BG202100 Rh2CG195100 Rh2DG197300
rosa_wichuraiana Rw2G015020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AccB7I CCANNNNNTGG 2 cut(s) 49, 465
AccI GTMKAC 1 cut(s) 14
AciI CCGC 2 cut(s) 411, 430
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 310, 402
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 214, 270
AfiI CCNNNNNNNGG 2 cut(s) 49, 465
AgsI TTSAA 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 8 cut(s) 67, 92, 164, 199, 208, 257, 264, 307
AluI AGCT 8 cut(s) 67, 92, 164, 199, 208, 257, 264, 307
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 310, 402
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 487
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 228
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 1 cut(s) 487
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 43, 337
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 2 cut(s) 68, 195
Bpu14I TTCGAA 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 486
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 465
Bse1I ACTGG 4 cut(s) 343, 349, 403, 470
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 486
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 49, 465
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 5 cut(s) 82, 107, 186, 239, 258
BseNI ACTGG 4 cut(s) 343, 349, 403, 470
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 49, 465
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 3 cut(s) 72, 84, 487
BspACI CCGC 2 cut(s) 411, 430
BspCNI CTCAG 5 cut(s) 81, 106, 187, 238, 257
BspPI GGATC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 4 cut(s) 343, 349, 403, 470
BssMI GATC 3 cut(s) 72, 84, 487
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 222, 366
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 5 cut(s) 68, 93, 195, 225, 244
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 75, 87, 490
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 72, 84, 487
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 2 cut(s) 72, 487
BstYI RGATCY 2 cut(s) 72, 487
BsuI GTATCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 432
Csp6I GTAC 2 cut(s) 213, 269
CviAII CATG 3 cut(s) 124, 233, 334
CviQI GTAC 2 cut(s) 213, 269
DdeI CTNAG 5 cut(s) 68, 93, 195, 225, 244
DpnI GATC 3 cut(s) 74, 86, 489
DpnII GATC 3 cut(s) 72, 84, 487
Eam1104I CTCTTC 2 cut(s) 222, 366
EarI CTCTTC 2 cut(s) 222, 366
Eco57I CTGAAG 1 cut(s) 203
EcoRI GAATTC 2 cut(s) 310, 402
FaeI CATG 3 cut(s) 127, 236, 337
FaiI YATR 6 cut(s) 125, 234, 239, 335, 353, 425
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 123, 232, 333
FauI CCCGC 1 cut(s) 423
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 1 cut(s) 34
Hin1II CATG 3 cut(s) 127, 236, 337
HincII GTYRAC 3 cut(s) 15, 178, 396
HindII GTYRAC 3 cut(s) 15, 178, 396
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 4 cut(s) 101, 133, 149, 469
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 15, 178, 396
Hpy188I TCNGA 2 cut(s) 247, 443
Hpy188III TCNNGA 2 cut(s) 70, 194
Hpy8I GTNNAC 3 cut(s) 15, 178, 396
Hpy99I CGWCG 2 cut(s) 19, 62
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 5 cut(s) 68, 93, 195, 225, 244
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 127, 236, 337
Kzo9I GATC 3 cut(s) 72, 84, 487
LmnI GCTCC 3 cut(s) 36, 254, 304
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 43, 337
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 74, 86, 489
MboI GATC 3 cut(s) 72, 84, 487
MboII GAAGA 5 cut(s) 209, 380, 383, 487, 497
MflI RGATCY 2 cut(s) 72, 487
MluCI AATT 2 cut(s) 310, 402
MnlI CCTC 4 cut(s) 244, 357, 367, 514
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 3 cut(s) 72, 84, 487
NlaIII CATG 3 cut(s) 127, 236, 337
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 99
PfeI GAWTC 4 cut(s) 101, 133, 149, 469
PflMI CCANNNNNTGG 2 cut(s) 49, 465
PkrI GCNGC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 72, 487
RsaI GTAC 2 cut(s) 214, 270
RsaNI GTAC 2 cut(s) 213, 269
SalI GTCGAC 1 cut(s) 13
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 72, 84, 487
SetI ASST 9 cut(s) 48, 69, 94, 166, 201, 210, 259, 266, 309
SfaNI GCATC 2 cut(s) 43, 337
SfuI TTCGAA 1 cut(s) 99
Sse9I AATT 2 cut(s) 310, 402
SsiI CCGC 2 cut(s) 411, 430
SspI AATATT 1 cut(s) 296
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 48
TaqI TCGA 4 cut(s) 14, 99, 136, 517
TasI AATT 2 cut(s) 310, 402
TfiI GAWTC 4 cut(s) 101, 133, 149, 469
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 140, 487, 498
Van91I CCANNNNNTGG 2 cut(s) 49, 465
XapI RAATTY 2 cut(s) 310, 402
XmiI GTMKAC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.