AT4G37480

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003816
Physical Location & Seq
Forward (+)
17619127 .. 17621596
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37480.1

Sequence Viewer

Length: 1596 bp
ATGACGATTCTCGCCGGGTTGATACGCCGGCGTTTTAGTAGATTAGTTCCGGTTCAACTGAATTACGGTTTCGAACCGTCGCGAATTCTCTTTAACCCGAGTCAAGGAAGAACTCGGTTGCTGAGCGGCGAGGCTGAGTCCAATCGGAACGAGTTTCCGGTGGAGAACGCTTACGATATCTTGAATGTCTCCGAAACCAGCTCAATCGCAGAGATCAAAGCATCATTTCGCAGACTCGCCAAGGAGACTCATCCTGATCTGATCGAATCCAAGAAAGATCCATCAAATTCGAGACGATTCGTTCAGATTCTCGCTGCTTATGAGATTCTATCAGATTCTGAAAAGAGAGCACACTATGATAGATATTTGCTATCTCGGAGAATGGTAATGAAGAAGCACTCGGGACAAGGTTATATGATTCACAGGTATAAAACAGGATTGACATTGAGTCAAGAGATGGAAGTAGTTGAATGGTTAAAGTGGTATAGAGAAGCAATACATGATATAGTATTGGAGAAGAGAGTAGCAAATGGTACTGGTTACTTAGATGAACTTGAAGAAGATTTTTATTCAGCTATACGAGCGGCCTACTTTGGGCCTGATGTTGAATCTGTTGAGCTTCTTCCTGATTGTTTTGAAGCTGAGGAAAGGTCTGTGTATGATACACGAGAGGTTTTGCATTTGGTATCAGGACGGGATCTTTTTGGTATGGTTTCCTTGGTTGATAACTTCCTTGAGCTTTCTTCTGCTTGCTCAAAGAAATTGGCTTTGTCGTCGTTTATGGATTCGGACCTTGGTCAAGCAGTTGAGAAAGGCAACAATGACATGATGTCTGCTGAAAGGATTGGTCTTCAGATATCTCATATACAATCTTCAAGAAGTAAAAACCATGTTTCTGATGCGTATAAAGATATTCAGCTGCATGTATCTGGAAGAGTTGTTGCTACAGCCATTAGGGTTCCCCCAAAAGGGTATCATGAAAAGAAACAAATTGAGGGTGATCACGATCTTATACACGTTTTCCTCAATTCAGATGAAGGATCTAATCATGGCACTGAATCGCCTCCGGGAAATGAAAGTGGTGCCAGACTTCTTGTTGGAACTATAAGTGGTCTTGGGACAATCCCAGATGAAGGTTCATGTTATGTCTATGATGGGAATGGTGCTAAGACTCATGTGATAATGAAACATAGGACATTTCTGGTGAGACATTTGCACTGGTACAAAATTGGGGAAAAGGTTTCCATTTGTGAATGTAGATGCAGTAGAGCGAAGTTACCACCAAGCAAGTTTTGGTTGTTTGAGCCTCGTTGTGGTTTGCATGATGTCGGAGGATGGTATGTTGAAACTTATGGGAAAGATAAAAAGAGCAGGACGGTCCTGGCACAAAGATTCTGGGATGGCCTGGAAGAGGGGAGTACACTGGATGGGAGACTGCACCCAGGTATCTACTTGCTTACACTAGCATATCGTACTCTTGATCTTGAAGATGAAAAGAGAAGGAAACGGTCAATATTGGAGATCCTCGAGGCACGGTTATCTAAAACATTGGATTGGTGTAAAGAATTGGTTAGAAGAAAGGGCCTTGGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

531

Amino Acids

60.48

Weight (kDa)

7.31

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 56 - 120 5.8e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1526
AccB1I GGYRCC 1 cut(s) 1082
AccBSI CCGCTC 2 cut(s) 126, 584
AccII CGCG 1 cut(s) 82
AciI CCGC 2 cut(s) 126, 584
AclWI GGATC 4 cut(s) 272, 705, 1048, 1516
AcsI RAATTY 2 cut(s) 84, 286
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 4 cut(s) 535, 1223, 1420, 1474
AfiI CCNNNNNNNGG 7 cut(s) 104, 594, 968, 969, 1133, 1313, 1411
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 9 cut(s) 56, 184, 470, 557, 608, 638, 876, 1346, 1487
AhdI GACNNNNNGTC 2 cut(s) 447, 829
AjnI CCWGG 3 cut(s) 1380, 1404, 1441
AluBI AGCT 6 cut(s) 201, 575, 619, 641, 739, 919
AluI AGCT 6 cut(s) 201, 575, 619, 641, 739, 919
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 5 cut(s) 193, 239, 286, 1201, 1426
AlwI GGATC 4 cut(s) 272, 705, 1048, 1516
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 3 cut(s) 97, 400, 1526
AoxI GGCC 4 cut(s) 585, 596, 1402, 1582
ApeKI GCWGC 2 cut(s) 314, 919
ApoI RAATTY 2 cut(s) 84, 286
AspS9I GGNCC 4 cut(s) 596, 790, 1378, 1582
AsuC2I CCSGG 2 cut(s) 16, 1068
AsuHPI GGTGA 2 cut(s) 1010, 1216
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 3 cut(s) 97, 400, 1526
AvaII GGWCC 2 cut(s) 790, 1378
BaeI ACNNNNGTAYC 2 cut(s) 1429, 1462
BanI GGYRCC 1 cut(s) 1082
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 301, 906
BccI CCATC 6 cut(s) 289, 451, 1148, 1329, 1394, 1421
BciT130I CCWGG 3 cut(s) 1382, 1406, 1443
BclI TGATCA 1 cut(s) 1000
BcnI CCSGG 2 cut(s) 16, 1068
BcoDI GTCTC 5 cut(s) 193, 239, 286, 1201, 1426
BfaI CTAG 1 cut(s) 1463
BfmI CTRYAG 1 cut(s) 945
BisI GCNGC 4 cut(s) 127, 315, 585, 920
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 4 cut(s) 128, 316, 586, 921
Bme1390I CCNGG 5 cut(s) 16, 1068, 1382, 1406, 1443
Bme18I GGWCC 2 cut(s) 790, 1378
BmeRI GACNNNNNGTC 2 cut(s) 447, 829
BmeT110I CYCGRG 3 cut(s) 97, 400, 1526
BmgT120I GGNCC 4 cut(s) 596, 790, 1378, 1582
BmiI GGNNCC 2 cut(s) 960, 1084
BmrFI CCNGG 5 cut(s) 16, 1068, 1382, 1406, 1443
BmsI GCATC 3 cut(s) 230, 889, 1250
BoxI GACNNNNGTC 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 842
Bpu10I CCTNAGC 1 cut(s) 642
Bpu1102I GCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 2 cut(s) 16, 1068
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 5 cut(s) 240, 717, 793, 1441, 1585
BsaWI WCCGGW 2 cut(s) 49, 157
Bsc4I CCNNNNNNNGG 7 cut(s) 104, 594, 968, 969, 1133, 1313, 1411
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 3 cut(s) 541, 1223, 1428
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 3 cut(s) 1382, 1406, 1443
BseDI CCNNGG 5 cut(s) 240, 717, 793, 1441, 1585
BseGI GGATG 4 cut(s) 250, 1340, 1405, 1432
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 7 cut(s) 104, 594, 968, 969, 1133, 1313, 1411
BseMII CTCAG 3 cut(s) 113, 126, 633
BseNI ACTGG 3 cut(s) 541, 1223, 1428
BseXI GCAGC 2 cut(s) 301, 906
BsgI GTGCAG 1 cut(s) 1421
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 587, 598, 1404, 1584
BshNI GGYRCC 1 cut(s) 1082
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 3 cut(s) 97, 400, 1526
BsiSI CCGG 5 cut(s) 15, 28, 50, 158, 1067
BslFI GGGAC 2 cut(s) 417, 1132
BslI CCNNNNNNNGG 7 cut(s) 104, 594, 968, 969, 1133, 1313, 1411
BsmAI GTCTC 5 cut(s) 193, 239, 286, 1201, 1426
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 2 cut(s) 417, 1132
BsnI GGCC 4 cut(s) 587, 598, 1404, 1584
BsoBI CYCGRG 3 cut(s) 97, 400, 1526
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 352
Bsp1720I GCTNAGC 1 cut(s) 122
Bsp68I TCGCGA 1 cut(s) 82
BspACI CCGC 2 cut(s) 126, 584
BspANI GGCC 4 cut(s) 587, 598, 1404, 1584
BspCNI CTCAG 3 cut(s) 114, 127, 634
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 976
BspLI GGNNCC 2 cut(s) 960, 1084
BspPI GGATC 4 cut(s) 272, 705, 1048, 1516
BspT104I TTCGAA 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 1082
BsrBI CCGCTC 2 cut(s) 126, 584
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 3 cut(s) 541, 1223, 1428
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 5 cut(s) 240, 717, 793, 1441, 1585
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 4 cut(s) 240, 717, 793, 1585
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 3 cut(s) 1382, 1406, 1443
Bst4CI ACNGT 5 cut(s) 68, 78, 1378, 1509, 1536
Bst6I CTCTTC 3 cut(s) 512, 928, 1404
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 29, 751
BstDEI CTNAG 5 cut(s) 122, 135, 544, 642, 1167
BstENI CCTNNNNNAGG 1 cut(s) 1409
BstF5I GGATG 4 cut(s) 250, 1340, 1405, 1432
BstFNI CGCG 1 cut(s) 82
BstMAI GTCTC 5 cut(s) 193, 239, 286, 1201, 1426
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 3 cut(s) 1382, 1406, 1443
BstNSI RCATGY 1 cut(s) 926
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 5 cut(s) 14, 1066, 1380, 1404, 1441
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 301, 906
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 4 cut(s) 277, 697, 1040, 1521
BstYI RGATCY 4 cut(s) 277, 697, 1040, 1521
BsuRI GGCC 4 cut(s) 587, 598, 1404, 1584
BtsCI GGATG 4 cut(s) 250, 1340, 1405, 1432
BtsIMutI CAGTG 3 cut(s) 1053, 1216, 1421
BtuMI TCGCGA 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 29, 751
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 976
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 4 cut(s) 596, 790, 1378, 1582
Csp6I GTAC 4 cut(s) 534, 1222, 1419, 1473
CviAII CATG 9 cut(s) 500, 826, 890, 923, 977, 1049, 1140, 1175, 1322
CviQI GTAC 4 cut(s) 534, 1222, 1419, 1473
DdeI CTNAG 5 cut(s) 122, 135, 544, 642, 1167
DriI GACNNNNNGTC 2 cut(s) 447, 829
Eam1104I CTCTTC 3 cut(s) 512, 928, 1404
Eam1105I GACNNNNNGTC 2 cut(s) 447, 829
EarI CTCTTC 3 cut(s) 512, 928, 1404
Eco130I CCWWGG 4 cut(s) 240, 717, 793, 1585
Eco32I GATATC 2 cut(s) 178, 858
Eco47I GGWCC 2 cut(s) 790, 1378
Eco57I CTGAAG 1 cut(s) 836
Eco88I CYCGRG 3 cut(s) 97, 400, 1526
EcoNI CCTNNNNNAGG 1 cut(s) 1409
EcoO109I RGGNCCY 1 cut(s) 1582
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 3 cut(s) 1380, 1404, 1441
EcoRV GATATC 2 cut(s) 178, 858
EcoT14I CCWWGG 4 cut(s) 240, 717, 793, 1585
ErhI CCWWGG 4 cut(s) 240, 717, 793, 1585
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 9 cut(s) 503, 829, 893, 926, 980, 1052, 1143, 1178, 1325
FaqI GGGAC 2 cut(s) 417, 1132
FatI CATG 9 cut(s) 499, 825, 889, 922, 976, 1048, 1139, 1174, 1321
FbaI TGATCA 1 cut(s) 1000
Fnu4HI GCNGC 4 cut(s) 127, 315, 585, 920
FokI GGATG 4 cut(s) 237, 1347, 1412, 1439
Fsp4HI GCNGC 4 cut(s) 127, 315, 585, 920
FspBI CTAG 1 cut(s) 1463
GluI GCNGC 4 cut(s) 127, 315, 585, 920
HaeIII GGCC 4 cut(s) 587, 598, 1404, 1584
HapII CCGG 5 cut(s) 15, 28, 50, 158, 1067
Hin1II CATG 9 cut(s) 503, 829, 893, 926, 980, 1052, 1143, 1178, 1325
HpaII CCGG 5 cut(s) 15, 28, 50, 158, 1067
HphI GGTGA 2 cut(s) 1010, 1216
Hpy166II GTNNAC 1 cut(s) 1421
Hpy8I GTNNAC 1 cut(s) 1421
Hpy99I CGWCG 2 cut(s) 82, 778
HpyAV CCTTC 3 cut(s) 1031, 1127, 1494
HpyCH4III ACNGT 5 cut(s) 68, 78, 1378, 1509, 1536
HpyCH4IV ACGT 1 cut(s) 1017
HpyCH4V TGCA 6 cut(s) 679, 922, 1216, 1263, 1321, 1438
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 5 cut(s) 122, 135, 544, 642, 1167
HpySE526I ACGT 1 cut(s) 1017
Hsp92II CATG 9 cut(s) 503, 829, 893, 926, 980, 1052, 1143, 1178, 1325
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 1000
Lsp1109I GCAGC 2 cut(s) 301, 906
LweI GCATC 3 cut(s) 230, 889, 1250
MaeI CTAG 1 cut(s) 1463
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 2 cut(s) 539, 1275
MbiI CCGCTC 2 cut(s) 126, 584
MflI RGATCY 4 cut(s) 277, 697, 1040, 1521
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 8 cut(s) 61, 84, 286, 761, 990, 1027, 1227, 1565
MlyI GAGTC 6 cut(s) 109, 146, 228, 241, 457, 1165
MmeI TCCRAC 2 cut(s) 1078, 1309
MreI CGCCGGCG 1 cut(s) 27
MroNI GCCGGC 1 cut(s) 27
MseI TTAA 3 cut(s) 93, 476, 1594
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 5 cut(s) 15, 28, 50, 158, 1067
MspR9I CCNGG 5 cut(s) 16, 1068, 1382, 1406, 1443
MvaI CCWGG 3 cut(s) 1382, 1406, 1443
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 581
NaeI GCCGGC 1 cut(s) 29
NciI CCSGG 2 cut(s) 16, 1068
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 9 cut(s) 503, 829, 893, 926, 980, 1052, 1143, 1178, 1325
NlaIV GGNNCC 2 cut(s) 960, 1084
NruI TCGCGA 1 cut(s) 82
NspI RCATGY 1 cut(s) 926
NspV TTCGAA 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 1526
PagI TCATGA 1 cut(s) 976
PdiI GCCGGC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 1066
PkrI GCNGC 4 cut(s) 128, 316, 586, 921
PleI GAGTC 6 cut(s) 108, 145, 228, 241, 456, 1165
PpsI GAGTC 6 cut(s) 108, 145, 228, 241, 456, 1165
PshAI GACNNNNGTC 1 cut(s) 795
Psp6I CCWGG 3 cut(s) 1380, 1404, 1441
PspGI CCWGG 3 cut(s) 1380, 1404, 1441
PspN4I GGNNCC 2 cut(s) 960, 1084
PspPI GGNCC 4 cut(s) 596, 790, 1378, 1582
PspXI VCTCGAGB 1 cut(s) 1526
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 4 cut(s) 277, 697, 1040, 1521
PvuII CAGCTG 1 cut(s) 919
RruI TCGCGA 1 cut(s) 82
RsaI GTAC 4 cut(s) 535, 1223, 1420, 1474
RsaNI GTAC 4 cut(s) 534, 1222, 1419, 1473
SaqAI TTAA 3 cut(s) 93, 476, 1594
SatI GCNGC 4 cut(s) 127, 315, 585, 920
Sau96I GGNCC 4 cut(s) 596, 790, 1378, 1582
SchI GAGTC 6 cut(s) 109, 146, 228, 241, 457, 1165
ScrFI CCNGG 5 cut(s) 16, 1068, 1382, 1406, 1443
SduI GDGCHC 1 cut(s) 352
SfaNI GCATC 3 cut(s) 230, 889, 1250
SfcI CTRYAG 1 cut(s) 945
Sfr274I CTCGAG 1 cut(s) 1526
SfuI TTCGAA 1 cut(s) 72
SgrAI CRCCGGYG 1 cut(s) 27
SinI GGWCC 2 cut(s) 790, 1378
SlaI CTCGAG 1 cut(s) 1526
SmlI CTYRAG 2 cut(s) 734, 1526
SmoI CTYRAG 2 cut(s) 734, 1526
Sse9I AATT 8 cut(s) 61, 84, 286, 761, 990, 1027, 1227, 1565
SsiI CCGC 2 cut(s) 126, 584
SspI AATATT 1 cut(s) 1515
SspMI CTAG 1 cut(s) 1463
StyD4I CCNGG 5 cut(s) 14, 1066, 1380, 1404, 1441
StyI CCWWGG 4 cut(s) 240, 717, 793, 1585
TaaI ACNGT 5 cut(s) 68, 78, 1378, 1509, 1536
TaiI ACGT 1 cut(s) 1020
TaqI TCGA 4 cut(s) 72, 264, 290, 1527
TasI AATT 8 cut(s) 61, 84, 286, 761, 990, 1027, 1227, 1565
TatI WGTACW 1 cut(s) 1418
TauI GCSGC 2 cut(s) 129, 587
Tru1I TTAA 3 cut(s) 93, 476, 1594
Tru9I TTAA 3 cut(s) 93, 476, 1594
TscAI CASTG 3 cut(s) 1060, 1223, 1428
TseI GCWGC 2 cut(s) 314, 919
TspDTI ATGAA 9 cut(s) 404, 564, 993, 1050, 1089, 1128, 1146, 1199, 1506
TspRI CASTG 3 cut(s) 1060, 1223, 1428
VpaK11BI GGWCC 2 cut(s) 790, 1378
XagI CCTNNNNNAGG 1 cut(s) 1409
XapI RAATTY 2 cut(s) 84, 286
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 1290
XhoI CTCGAG 1 cut(s) 1526
XspI CTAG 1 cut(s) 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.