Rorug02G0142200

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003816
Physical Location & Seq
Forward (+)
12515161 .. 12516728
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0142200.1

Sequence Viewer

Length: 501 bp
ATGATACGAGCGGTGATAGTGATAAATACTCAGGGCAAGCCTCGCCTTGCTAAGTTCTACGAATTTCAGCCTGTGGAGAAGCAACAGGAGCTAATACGCAGCGTCTATGGAGTTTTGAGCAGTAGAGCTGAGAATGTGAGCAATTTCCTGGATGCGGAGTCTATTTTTGGTCCGGACACTCGTCTTGTGTACAAGCATTTTGCAACTTTGTACTTTGTCTTTGTTTTCGATAGTTCTGAAAACGAGCTTGCCATGCTCGACTTGATACAAGTTTTTGTGGAAACATTGGACAAATGCTTCAAGAACGTATGCGAGCTTGATGTGGTGCTCAATTACAGCAAGTTGCATACTGTATTGGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACAAGTTCCACCGAAGTTCTGAAGGCAGTTGAAGAAATCTCAAAGTTAGAAACAGCTTCAAACGCTATTTCATTGGTTCCAAAATCTGTTTCTAGCTGGAGGAGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

166

Amino Acids

18.82

Weight (kDa)

5.11

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 146 9.1e-48 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 11, 155
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 301, 422, 450
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 6 cut(s) 91, 128, 247, 316, 446, 486
AluI AGCT 6 cut(s) 91, 128, 247, 316, 446, 486
Alw21I GWGCWC 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 483
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 157, 364
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 44, 120
BseXI GCAGC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 330
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 189
BspACI CCGC 2 cut(s) 11, 155
BspCNI CTCAG 2 cut(s) 43, 121
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 38, 249, 314
BstDEI CTNAG 3 cut(s) 30, 51, 129
BstF5I GGATG 2 cut(s) 157, 364
BstMWI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
BstNI CCWGG 1 cut(s) 149
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 157, 364
Cac8I GCNNGC 3 cut(s) 38, 249, 314
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 190, 211
CviAII CATG 1 cut(s) 253
CviJI RGCY 8 cut(s) 40, 70, 91, 128, 247, 316, 446, 486
CviKI_1 RGCY 8 cut(s) 40, 70, 91, 128, 247, 316, 446, 486
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 3 cut(s) 30, 51, 129
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 256
FaiI YATR 4 cut(s) 108, 254, 310, 348
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 2 cut(s) 164, 371
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 483
GluI GCNGC 1 cut(s) 100
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 256
HinfI GANTC 2 cut(s) 158, 493
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 238, 411
Hpy188III TCNNGA 2 cut(s) 173, 301
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 203, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
HpyF3I CTNAG 3 cut(s) 30, 51, 129
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 172
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 17, 71, 84, 134, 161, 186, 371, 472
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 11
MboII GAAGA 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 62, 142, 331
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 3 cut(s) 51, 368, 483
MroI TCCGGA 1 cut(s) 172
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 42, 88, 253, 452
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 468
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 330
SetI ASST 8 cut(s) 93, 130, 249, 309, 318, 379, 448, 488
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 170
Sse9I AATT 3 cut(s) 62, 142, 331
SsiI CCGC 2 cut(s) 11, 155
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 228, 258, 496
TasI AATT 3 cut(s) 62, 142, 331
TatI WGTACW 2 cut(s) 189, 210
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 62
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.