FvH4_1g17190

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003816
Physical Location & Seq
Forward (+)
9931047 .. 9934795
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17190.t2

Sequence Viewer

Length: 1248 bp
ATGGCTTCTCTCTCCTACGACCACTCGCTGTTTCTCCGCCGCAGTCAAATTCAACCGTTTCCTCGGCGTTATCTCTTGTTATTCTATCACCGGACCACCGATACTCGGCGGTTCAGCACCAGCAGCGCCGAGTCAACTCAGACCGAGTTCACCGAGGAAAACGCATACGAGCTCTTAGGCGTGTCGGAGACGAGCTCATTCGCCGACATCAAAGCTTCGTTCCACAAATTGGCGAAACAGACTCACCCGGACCTCGTTCACTCCGATCACGATTCCGACGCTTCTCGCCGATTCGTTCAAATCCTCGCCGCCTATGAGATTCTTTCGGATTGCGAAAGGAGGGCGCATTACGACAGGGACCTGTTATCGCAGCGAAAGCTTATGCAGAAGCAATCCGGGGGAGGTGGTGCATTGCATTTGTATAAGTTTCATAGTACATATAGGGGGATGGAAGTTGTGGAATGGTTGAAATGGTATAGAGTTGCGATAAGTGATGTGTTGGCTGAGAGGAGGGTGGTTGTTGGAACAGGTTATTTTGATGTGCTCGAGAGGGATTTTTATTCCGCCATACATGCGGCGTATTATGGTCCTGAAATTGAGTCTATTGATTGTCTTCCTGACTGCTTTGAAGCTGAAGAGAGGTCTGTGTATGAAACTCCGGAGGTGCTGCATTTGGTTTCGGGGCGTGATGTTTTTGGGATGGTCTGTGTAGTAGATAAAGTTCCGGAGTTAGCATATAGCAACAAGAGGTTGAACTATTCCACATCAGCGGATTTAGGTATATGTCAATCTGCTGAGGATTTGAGAATCTCTATGAGCTCTGGTGGCACCCACACATCTGATCCTTTTAGAGATTTAAAATTGCATATATCTGGAAGGGTGGTTGCTACGGCCACTAGAGTCCCTCCCAAAAGCTATTGTGACGGGATACAGAATGAAGACACTGATCACATTCACGTTTTTCTGAGCTCTGATGATAACCCTGTGCATACCAGCAAAGGGTTTACTGAAGCTTCAAGTTCAGGCAGTGCTGTGGGGTCAAGGATTCTATTGGGAACTATAACTGGGTTACGGACTAGCTCAGAAGAAGGGTCTTGTCTTGTCTACAATAGCAGTGGTACCAAGACCCATGTGATTATGAAGCATAGAACACTGCTGGTGAAACACATGCATTGGTATGGATTAGGAGACAATGTTTCTGTATGTGAGTGTAGATGCACGAGAGCACGATTACCACCAAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

416

Amino Acids

46.71

Weight (kDa)

6.37

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 54 - 118 2.2e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1118
AccB1I GGYRCC 2 cut(s) 827, 1118
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 1104
AccIII TCCGGA 2 cut(s) 658, 724
AciI CCGC 7 cut(s) 37, 40, 109, 309, 564, 575, 770
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 654, 1029
AfaI GTAC 2 cut(s) 436, 1120
AfiI CCNNNNNNNGG 3 cut(s) 105, 229, 999
AgsI TTSAA 6 cut(s) 53, 299, 469, 629, 754, 1017
Alw21I GWGCWC 6 cut(s) 174, 197, 546, 821, 971, 1228
Alw26I GTCTC 2 cut(s) 182, 1182
AlwI GGATC 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 545
Aor13HI TCCGGA 2 cut(s) 658, 724
AoxI GGCC 1 cut(s) 891
ApeKI GCWGC 3 cut(s) 123, 370, 667
ApoI RAATTY 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 1118
AspLEI GCGC 2 cut(s) 128, 346
AspS9I GGNCC 4 cut(s) 93, 250, 358, 587
AsuC2I CCSGG 2 cut(s) 248, 397
AsuHPI GGTGA 4 cut(s) 80, 142, 236, 1171
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 4 cut(s) 93, 250, 358, 587
BanI GGYRCC 2 cut(s) 827, 1118
BanII GRGCYC 4 cut(s) 174, 197, 821, 971
BauI CACGAG 1 cut(s) 1219
BbsI GAAGAC 2 cut(s) 605, 945
Bbv12I GWGCWC 6 cut(s) 174, 197, 546, 821, 971, 1228
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 135, 382, 654
BccI CCATC 2 cut(s) 442, 694
BceAI ACGGC 1 cut(s) 906
BciVI GTATCC 1 cut(s) 921
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 2 cut(s) 248, 397
BcoDI GTCTC 2 cut(s) 182, 1182
BfaI CTAG 2 cut(s) 897, 1077
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 6 cut(s) 40, 124, 309, 371, 576, 668
BlsI GCNGC 6 cut(s) 41, 125, 310, 372, 577, 669
Bme1390I CCNGG 2 cut(s) 248, 397
Bme18I GGWCC 4 cut(s) 93, 250, 358, 587
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 4 cut(s) 93, 250, 358, 587
BmiI GGNNCC 3 cut(s) 359, 829, 1120
BmrFI CCNGG 2 cut(s) 248, 397
BmrI ACTGGG 1 cut(s) 1074
BmsI GCATC 1 cut(s) 1205
BmuI ACTGGG 1 cut(s) 1074
BpiI GAAGAC 2 cut(s) 605, 945
BplI GAGNNNNNCTC 2 cut(s) 179, 211
Bpu10I CCTNAGC 1 cut(s) 795
BpuMI CCSGG 2 cut(s) 248, 397
BsaJI CCNNGG 3 cut(s) 62, 153, 396
BsaWI WCCGGW 3 cut(s) 90, 658, 724
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 229, 999
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 1 cut(s) 410
BseAI TCCGGA 2 cut(s) 658, 724
BseDI CCNNGG 3 cut(s) 62, 153, 396
BseGI GGATG 2 cut(s) 453, 705
BseLI CCNNNNNNNGG 3 cut(s) 105, 229, 999
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 5 cut(s) 152, 495, 786, 956, 1095
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 1 cut(s) 523
BseXI GCAGC 3 cut(s) 135, 382, 654
BshFI GGCC 1 cut(s) 893
BshNI GGYRCC 2 cut(s) 827, 1118
BsiHKAI GWGCWC 6 cut(s) 174, 197, 546, 821, 971, 1228
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 5 cut(s) 91, 248, 396, 659, 725
BslFI GGGAC 2 cut(s) 371, 887
BslI CCNNNNNNNGG 3 cut(s) 105, 229, 999
BsmAI GTCTC 2 cut(s) 182, 1182
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 371, 887
BsnI GGCC 1 cut(s) 893
BsoBI CYCGRG 1 cut(s) 545
Bsp1286I GDGCHC 6 cut(s) 174, 197, 546, 821, 971, 1228
Bsp13I TCCGGA 2 cut(s) 658, 724
Bsp143I GATC 3 cut(s) 265, 841, 946
BspACI CCGC 7 cut(s) 37, 40, 109, 309, 564, 575, 770
BspANI GGCC 1 cut(s) 893
BspCNI CTCAG 5 cut(s) 151, 496, 787, 957, 1094
BspEI TCCGGA 2 cut(s) 658, 724
BspLI GGNNCC 3 cut(s) 359, 829, 1120
BspPI GGATC 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 827, 1118
BsrDI GCAATG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 3 cut(s) 62, 153, 396
BssMI GATC 3 cut(s) 265, 841, 946
BssSI CACGAG 1 cut(s) 1219
Bst2BI CACGAG 1 cut(s) 1219
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 630
BstDEI CTNAG 6 cut(s) 138, 175, 504, 795, 965, 1081
BstF5I GGATG 2 cut(s) 453, 705
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 346
BstKTI GATC 3 cut(s) 268, 844, 949
BstMAI GTCTC 2 cut(s) 182, 1182
BstMBI GATC 3 cut(s) 265, 841, 946
BstMWI GCNNNNNNNGC 4 cut(s) 123, 376, 572, 825
BstNSI RCATGY 2 cut(s) 575, 1171
BstSCI CCNGG 2 cut(s) 246, 395
BstV1I GCAGC 3 cut(s) 135, 382, 654
BstV2I GAAGAC 2 cut(s) 605, 945
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 1 cut(s) 893
BtsCI GGATG 2 cut(s) 453, 705
BtsI GCAGTG 3 cut(s) 1033, 1120, 1151
BtsIMutI CAGTG 4 cut(s) 942, 1033, 1120, 1151
CfoI GCGC 2 cut(s) 128, 346
Cfr13I GGNCC 4 cut(s) 93, 250, 358, 587
CseI GACGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 435, 1119
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 3 cut(s) 572, 1130, 1168
CviQI GTAC 2 cut(s) 435, 1119
DdeI CTNAG 6 cut(s) 138, 175, 504, 795, 965, 1081
DpnI GATC 3 cut(s) 267, 843, 948
DpnII GATC 3 cut(s) 265, 841, 946
DraI TTTAAA 1 cut(s) 858
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 2 cut(s) 26, 553
Ecl136II GAGCTC 4 cut(s) 172, 195, 819, 969
Eco24I GRGCYC 4 cut(s) 174, 197, 821, 971
Eco47I GGWCC 4 cut(s) 93, 250, 358, 587
Eco53kI GAGCTC 4 cut(s) 172, 195, 819, 969
Eco57I CTGAAG 2 cut(s) 654, 1029
Eco88I CYCGRG 1 cut(s) 545
EcoICRI GAGCTC 4 cut(s) 172, 195, 819, 969
EcoO109I RGGNCCY 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 1173
EcoT38I GRGCYC 4 cut(s) 174, 197, 821, 971
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 3 cut(s) 575, 1133, 1171
FaqI GGGAC 2 cut(s) 371, 887
FatI CATG 3 cut(s) 571, 1129, 1167
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 1 cut(s) 1104
Fnu4HI GCNGC 6 cut(s) 40, 124, 309, 371, 576, 668
FokI GGATG 2 cut(s) 460, 712
FriOI GRGCYC 4 cut(s) 174, 197, 821, 971
Fsp4HI GCNGC 6 cut(s) 40, 124, 309, 371, 576, 668
FspBI CTAG 2 cut(s) 897, 1077
GlaI GCGC 2 cut(s) 127, 345
GluI GCNGC 6 cut(s) 40, 124, 309, 371, 576, 668
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 893
HapII CCGG 5 cut(s) 91, 248, 396, 659, 725
HgaI GACGC 1 cut(s) 287
HhaI GCGC 2 cut(s) 128, 346
Hin1II CATG 3 cut(s) 575, 1133, 1171
Hin6I GCGC 2 cut(s) 126, 344
HinP1I GCGC 2 cut(s) 126, 344
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 3 cut(s) 213, 377, 1011
HinfI GANTC 9 cut(s) 131, 241, 272, 291, 319, 599, 807, 900, 1045
HpaII CCGG 5 cut(s) 91, 248, 396, 659, 725
HphI GGTGA 4 cut(s) 80, 142, 236, 1171
Hpy166II GTNNAC 5 cut(s) 135, 150, 259, 1005, 1105
Hpy188I TCNGA 9 cut(s) 141, 187, 265, 277, 328, 841, 966, 973, 1084
Hpy188III TCNNGA 7 cut(s) 269, 547, 590, 617, 659, 725, 873
Hpy8I GTNNAC 5 cut(s) 135, 150, 259, 1005, 1105
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 870, 1082
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 957
HpyCH4V TGCA 8 cut(s) 385, 410, 415, 670, 865, 988, 1171, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 376, 572, 825
HpyF3I CTNAG 6 cut(s) 138, 175, 504, 795, 965, 1081
HpySE526I ACGT 1 cut(s) 957
Hsp92II CATG 3 cut(s) 575, 1133, 1171
HspAI GCGC 2 cut(s) 126, 344
Kpn2I TCCGGA 2 cut(s) 658, 724
KpnI GGTACC 1 cut(s) 1122
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 3 cut(s) 265, 841, 946
Lsp1109I GCAGC 3 cut(s) 135, 382, 654
LweI GCATC 1 cut(s) 1205
MaeI CTAG 2 cut(s) 897, 1077
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 2 cut(s) 920, 1068
MalI GATC 3 cut(s) 267, 843, 948
MboI GATC 3 cut(s) 265, 841, 946
MboII GAAGA 4 cut(s) 605, 647, 950, 1097
MhlI GDGCHC 6 cut(s) 174, 197, 546, 821, 971, 1228
MluCI AATT 4 cut(s) 48, 227, 594, 860
MlyI GAGTC 4 cut(s) 140, 235, 608, 909
MmeI TCCRAC 3 cut(s) 165, 300, 502
Mph1103I ATGCAT 1 cut(s) 1173
MroI TCCGGA 2 cut(s) 658, 724
MseI TTAA 1 cut(s) 857
MslI CAYNNNNRTG 1 cut(s) 1176
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 5 cut(s) 91, 248, 396, 659, 725
MspR9I CCNGG 2 cut(s) 248, 397
MwoI GCNNNNNNNGC 4 cut(s) 123, 376, 572, 825
NciI CCSGG 2 cut(s) 248, 397
NdeII GATC 3 cut(s) 265, 841, 946
NlaIII CATG 3 cut(s) 575, 1133, 1171
NlaIV GGNNCC 3 cut(s) 359, 829, 1120
NmeAIII GCCGAG 3 cut(s) 43, 85, 154
NmuCI GTSAC 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 2 cut(s) 575, 1171
PaeR7I CTCGAG 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 5 cut(s) 272, 291, 319, 807, 1045
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 6 cut(s) 41, 125, 310, 372, 577, 669
PleI GAGTC 4 cut(s) 139, 235, 607, 908
PpsI GAGTC 4 cut(s) 139, 235, 607, 908
PpuMI RGGWCCY 1 cut(s) 358
Psp124BI GAGCTC 4 cut(s) 174, 197, 821, 971
Psp5II RGGWCCY 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 359, 829, 1120
PspPI GGNCC 4 cut(s) 93, 250, 358, 587
PspPPI RGGWCCY 1 cut(s) 358
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
RsaI GTAC 2 cut(s) 436, 1120
RsaNI GTAC 2 cut(s) 435, 1119
RseI CAYNNNNRTG 1 cut(s) 1176
SacI GAGCTC 4 cut(s) 174, 197, 821, 971
SaqAI TTAA 1 cut(s) 857
SatI GCNGC 6 cut(s) 40, 124, 309, 371, 576, 668
Sau3AI GATC 3 cut(s) 265, 841, 946
Sau96I GGNCC 4 cut(s) 93, 250, 358, 587
SchI GAGTC 4 cut(s) 140, 235, 608, 909
ScrFI CCNGG 2 cut(s) 248, 397
SduI GDGCHC 6 cut(s) 174, 197, 546, 821, 971, 1228
SfaNI GCATC 1 cut(s) 1205
Sfr274I CTCGAG 1 cut(s) 545
SinI GGWCC 4 cut(s) 93, 250, 358, 587
SlaI CTCGAG 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 1176
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 4 cut(s) 48, 227, 594, 860
SsiI CCGC 7 cut(s) 37, 40, 109, 309, 564, 575, 770
SspMI CTAG 2 cut(s) 897, 1077
SstI GAGCTC 4 cut(s) 174, 197, 821, 971
StyD4I CCNGG 2 cut(s) 246, 395
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 960
TaqI TCGA 1 cut(s) 546
TaqII GACCGA 1 cut(s) 158
TasI AATT 4 cut(s) 48, 227, 594, 860
TatI WGTACW 1 cut(s) 434
TauI GCSGC 3 cut(s) 42, 311, 578
TfiI GAWTC 5 cut(s) 272, 291, 319, 807, 1045
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 4 cut(s) 949, 1033, 1120, 1158
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 3 cut(s) 123, 370, 667
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 4 cut(s) 419, 666, 951, 1154
TspGWI ACGGA 1 cut(s) 1087
TspRI CASTG 4 cut(s) 949, 1033, 1120, 1158
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 4 cut(s) 93, 250, 358, 587
XapI RAATTY 1 cut(s) 48
XceI RCATGY 2 cut(s) 575, 1171
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 1104
XspI CTAG 2 cut(s) 897, 1077
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.