Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

17787524 .. 17788834

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAACGGCGATTGTACGTTCAGCTCTTTCCCGAGCAGTGACTCGCGCAGCTCCGAAGACATCCGTCGCTCCTAAGCGAAACTTTTCCTCTTCCGCCGGCCATGACGATGCTTATGAAGCTGCGAAGTGGGAGAAGATAACTTATCTGGGTATTGCTAGTTGCACTGCTCTAGCTGTCTATGTTTTATCCAAGGGCCATCATCACGGCGAAGACCCTCCTGCCTATCCGCATATGCACATCCGCAACAAGGAGTTTCCTTGGGGTCCGGATGGTCTGTTTGAGGTGAAGCACAACAAAGAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

9.13

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	3 cut(s)	96, 230, 244
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	250
AluBI	AGCT	4 cut(s)	26, 53, 122, 176
AluI	AGCT	4 cut(s)	26, 53, 122, 176
Alw21I	GWGCWC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	2 cut(s)	100, 196
ApeKI	GCWGC	2 cut(s)	50, 122
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	196, 266
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	266
BbsI	GAAGAC	2 cut(s)	65, 219
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	62, 109
BccI	CCATC	2 cut(s)	207, 266
BceAI	ACGGC	2 cut(s)	24, 223
BfaI	CTAG	2 cut(s)	159, 173
BisI	GCNGC	2 cut(s)	51, 123
BlsI	GCNGC	2 cut(s)	52, 124
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	196, 266
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	100
BoxI	GACNNNNGTC	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	65, 219
Bpu10I	CCTNAGC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	192, 260
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	98
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	192, 260
BseGI	GGATG	3 cut(s)	62, 240, 277
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	62, 109
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	102, 198
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	99, 269
BslI	CCNNNNNNNGG	1 cut(s)	250
BsnI	GGCC	2 cut(s)	102, 198
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp13I	TCCGGA	1 cut(s)	268
BspACI	CCGC	3 cut(s)	96, 230, 244
BspANI	GGCC	2 cut(s)	102, 198
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	192, 260
BssT1I	CCWWGG	2 cut(s)	192, 260
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	62, 240, 277
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 109
BstV2I	GAAGAC	2 cut(s)	65, 219
BsuRI	GGCC	2 cut(s)	102, 198
BtsCI	GGATG	3 cut(s)	62, 240, 277
BtsI	GCAGTG	2 cut(s)	45, 165
BtsIMutI	CAGTG	3 cut(s)	45, 165, 304
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	196, 266
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	6 cut(s)	26, 53, 102, 122, 176, 198
CviKI_1	RGCY	6 cut(s)	26, 53, 102, 122, 176, 198
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	192, 260
Eco47I	GGWCC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	192, 260
ErhI	CCWWGG	2 cut(s)	192, 260
FaeI	CATG	1 cut(s)	107
FaiI	YATR	5 cut(s)	105, 117, 183, 234, 236
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	51, 123
FokI	GGATG	3 cut(s)	49, 227, 284
Fsp4HI	GCNGC	2 cut(s)	51, 123
FspBI	CTAG	2 cut(s)	159, 173
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	51, 123
HaeIII	GGCC	2 cut(s)	102, 198
HapII	CCGG	2 cut(s)	99, 269
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	99, 269
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	33, 269
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	165, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	58, 76
LpnPI	CCDG	4 cut(s)	112, 134, 234, 282
Lsp1109I	GCAGC	2 cut(s)	62, 109
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	159, 173
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	70, 84, 148, 224
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	100, 228, 277
MroI	TCCGGA	1 cut(s)	268
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	85
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	99, 269
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	119
NaeI	GCCGGC	1 cut(s)	100
NdeI	CATATG	1 cut(s)	234
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	52, 124
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshAI	GACNNNNGTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	196, 266
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	2 cut(s)	51, 123
Sau96I	GGNCC	2 cut(s)	196, 266
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	6 cut(s)	22, 28, 55, 124, 178, 288
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	108
SsiI	CCGC	3 cut(s)	96, 230, 244
SspMI	CTAG	2 cut(s)	159, 173
StyI	CCWWGG	2 cut(s)	192, 260
TaiI	ACGT	1 cut(s)	22
TscAI	CASTG	2 cut(s)	45, 172
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	50, 122
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	45, 172
VpaK11BI	GGWCC	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	2 cut(s)	159, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.