Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

18438823 .. 18441279

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1193900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGACGGCGATGTTCCGATCTGCTGGGCTTCGAACCGCCCTGCGTGGCGGCTCTCGATCCGCTGCTCCTCCAAGGCGCTCATTCTCCTCCTCTGCTGGACACGACGATGCTCGTGAGACGGCCAAGTGGGAGAAGATAACTTACCTGGGCATCGCTTCCTGCACTATTTTAGCTTTTGTTAACCTGTCAAAGCCGCATCCTCACTACGATGCGCCTCCCGCTTACCCATATTTGCACATCCGCAATAAGGAATTCCCATGGGGTCCAGATGGCCTTTTTGAAACAAAGCATGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

101

Amino Acids

11.12

Weight (kDa)

9.51

Isoelectric Point (pI)

69.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	39, 51, 63, 197, 222, 244
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	123, 274
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	81, 217
AspS9I	GGNCC	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BauI	CACGAG	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	24, 138
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	3 cut(s)	52, 66, 197
BlsI	GCNGC	3 cut(s)	53, 67, 198
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	4 cut(s)	100, 162, 202, 208
Bpu14I	TTCGAA	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	74, 148, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	74, 148, 260
BseGI	GGATG	2 cut(s)	199, 240
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseRI	GAGGAG	3 cut(s)	60, 79, 82
BseXI	GCAGC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	125, 276
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	125, 276
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	20, 59
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	6 cut(s)	39, 51, 63, 197, 222, 244
BspANI	GGCC	2 cut(s)	125, 276
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	74, 148, 260
BssMI	GATC	2 cut(s)	20, 59
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	74, 260
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	199, 240
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 217
BstKTI	GATC	2 cut(s)	23, 62
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	20, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	125, 276
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	2 cut(s)	26, 139
BtsCI	GGATG	2 cut(s)	199, 240
CfoI	GCGC	2 cut(s)	81, 217
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	2 cut(s)	261, 293
CviJI	RGCY	6 cut(s)	31, 54, 125, 176, 196, 276
CviKI_1	RGCY	6 cut(s)	31, 54, 125, 176, 196, 276
DpnI	GATC	2 cut(s)	22, 61
DpnII	GATC	2 cut(s)	20, 59
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	74, 260
Eco47I	GGWCC	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	74, 260
ErhI	CCWWGG	2 cut(s)	74, 260
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	264, 296
FaiI	YATR	3 cut(s)	232, 262, 294
FatI	CATG	2 cut(s)	260, 292
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	52, 66, 197
FokI	GGATG	2 cut(s)	186, 227
Fsp4HI	GCNGC	3 cut(s)	52, 66, 197
FspBI	CTAG	1 cut(s)	301
GlaI	GCGC	2 cut(s)	80, 216
GluI	GCNGC	3 cut(s)	52, 66, 197
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	125, 276
HhaI	GCGC	2 cut(s)	81, 217
Hin1II	CATG	2 cut(s)	264, 296
Hin6I	GCGC	2 cut(s)	79, 215
HinP1I	GCGC	2 cut(s)	79, 215
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaI	GTTAAC	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	57, 116, 269
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	10, 110
HpyCH4V	TGCA	2 cut(s)	165, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	264, 296
HspAI	GCGC	2 cut(s)	79, 215
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	20, 59
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	12, 56, 84, 134, 161, 175, 200, 282
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	4 cut(s)	100, 162, 202, 208
MaeI	CTAG	1 cut(s)	301
MalI	GATC	2 cut(s)	22, 61
MboI	GATC	2 cut(s)	20, 59
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	5 cut(s)	81, 100, 103, 213, 228
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	2 cut(s)	108, 210
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	20, 59
NlaIII	CATG	2 cut(s)	264, 296
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	53, 67, 198
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	108, 210
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	52, 66, 197
Sau3AI	GATC	2 cut(s)	20, 59
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	3 cut(s)	150, 178, 189
SfaNI	GCATC	4 cut(s)	100, 162, 202, 208
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	108, 210
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	6 cut(s)	39, 51, 63, 197, 222, 244
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	74, 260
TaqI	TCGA	2 cut(s)	34, 58
TasI	AATT	1 cut(s)	254
TauI	GCSGC	2 cut(s)	54, 199
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.