Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

52894 .. 55197

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgaaccccacaagttcaacatactcggggatgtctggcagaaagcttctgctgcttcaatgggacctttgggctaggccttgtattgatcaaatagtagatgagacggccaagtgggagaagataacatatttaggcattatttcatgcactgggctagccgtttacattctgtcgaagggccatcatcactatgaaacacctcctccgtacccatatttgcgcattcgcaacaaggagttcccgtggggtcctgatggcctatttgaagccaagcacgaagaccaccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

97

Amino Acids

11.27

Weight (kDa)

6.57

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	108
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	18, 59, 269
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	4 cut(s)	77, 108, 181, 259
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	64, 181, 251
AsuNHI	GCTAGC	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	64, 251
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	192, 251
BceAI	ACGGC	2 cut(s)	123, 146
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	75, 158
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme18I	GGWCC	2 cut(s)	64, 251
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	64, 181, 251
BmiI	GGNNCC	2 cut(s)	65, 252
BmrI	ACTGGG	1 cut(s)	162
BmtI	GCTAGC	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 230, 260
Bse1I	ACTGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	39
BshFI	GGCC	4 cut(s)	79, 110, 183, 261
BsiHKCI	CYCGRG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	4 cut(s)	79, 110, 183, 261
BsoBI	CYCGRG	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	4 cut(s)	79, 110, 183, 261
BspLI	GGNNCC	2 cut(s)	65, 252
BspOI	GCTAGC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	79, 110, 183, 261
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	64, 181, 251
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	9 cut(s)	46, 74, 79, 110, 157, 161, 183, 261, 272
CviKI_1	RGCY	9 cut(s)	46, 74, 79, 110, 157, 161, 183, 261, 272
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	64, 251
Eco88I	CYCGRG	1 cut(s)	25
EcoO109I	RGGNCCY	2 cut(s)	64, 251
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	150
FaiI	YATR	5 cut(s)	22, 130, 148, 195, 217
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	1 cut(s)	146
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	2 cut(s)	75, 158
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	79, 110, 183, 261
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	150
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	21, 138, 267
Lsp1109I	GCAGC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	75, 158
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	133, 293
MnlI	CCTC	2 cut(s)	213, 216
MseI	TTAA	1 cut(s)	292
MslI	CAYNNNNRTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	2 cut(s)	65, 252
NsbI	TGCGCA	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	79
PctI	GAATGC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	54
PpuMI	RGGWCCY	2 cut(s)	64, 251
Psp5II	RGGWCCY	2 cut(s)	64, 251
PspN4I	GGNNCC	2 cut(s)	65, 252
PspPI	GGNCC	3 cut(s)	64, 181, 251
PspPPI	RGGWCCY	2 cut(s)	64, 251
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	64, 181, 251
SetI	ASST	3 cut(s)	48, 69, 205
SinI	GGWCC	2 cut(s)	64, 251
SmiMI	CAYNNNNRTG	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	75, 158
StuI	AGGCCT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	17, 135, 210
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	64, 251
XspI	CTAG	2 cut(s)	75, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.