Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007342

Physical Location & Seq

Genomic Coordinates Reverse (-)

77097505 .. 77098209

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTCCGATTTGGTGCGCTCCGAACCGCCCTGCTCGGTGGCTCTTGGCCCTCTAGTCCGCCCAAGCGCTCCCTCTCCTCCTCCATCGGTCACGATGATGCTTACGAGATGGCTTTAGGCATTGTTTCATGCACTGGGCTAGCCGTATTTGCACATTCACAACAAGGAGTTCCCATGGGGAATATTTCAACTGAGAGACTGTTCTCATTAACAAGTGGTGCTTTGAAGGTGAGCGGAGATAAAGCAGCTATGCGAGAATTTAACAATGGGCTTGCAGAAGATCTGGAGGAGGATAAGCGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0022900 GO:0022904 GO:0030234 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0050790 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0098772 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6A

Protein Analysis

102

Amino Acids

10.74

Weight (kDa)

5.64

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37830 AT4G37830 AT4G37830
fragaria_vesca	FvH4_1g18620
malus_domestica	MD02G1193900.v1.1 MD15G1304000.v1.1
prunus_persica	Prupe.6G213100_v2.0.a1 Prupe.6G213100_v2.0.a1
pyrus_communis	pycom02g15790 pycom15g26700
rosa_chinensis	RchiOBHm_Chr2g0109411
rosa_laevigata	RLG00000017735 RLG00000021665
rosa_multiflora	Rmu_sc0000332.1_g000013 Rmu_sc0026699.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134260
rosa_rugosa	Rorug02G0159800
rosa_samantha	Rh2AG211800 Rh2BG222200 Rh2CG214000 Rh2DG217500 Rh7DG270000
rosa_wichuraiana	Rw1G027160 Rw2G026280 Rw5G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	234
AciI	CCGC	3 cut(s)	27, 59, 234
AcsI	RAATTY	1 cut(s)	257
AfeI	AGCGCT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	189, 226
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	19, 69
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	241
AsuNHI	GCTAGC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	92, 103
BceAI	ACGGC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	54, 140
BfoI	RGCGCY	1 cut(s)	70
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	88
BmtI	GCTAGC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	3 cut(s)	67, 70, 302
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	280
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	3 cut(s)	27, 59, 234
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	141, 273
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	19, 69
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	141, 273
CfoI	GCGC	2 cut(s)	19, 69
Cfr13I	GGNCC	1 cut(s)	48
CviAII	CATG	2 cut(s)	129, 175
CviJI	RGCY	7 cut(s)	42, 49, 113, 139, 143, 248, 271
CviKI_1	RGCY	7 cut(s)	42, 49, 113, 139, 143, 248, 271
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	174
Eco47III	AGCGCT	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	132, 178
FaiI	YATR	3 cut(s)	130, 176, 251
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	2 cut(s)	128, 174
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	54, 140
GlaI	GCGC	2 cut(s)	18, 68
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	19, 69
Hin1II	CATG	2 cut(s)	132, 178
Hin6I	GCGC	2 cut(s)	17, 67
HinP1I	GCGC	2 cut(s)	17, 67
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	8, 23
Hpy188III	TCNNGA	2 cut(s)	92, 284
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	132, 152, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	132, 178
HspAI	GCGC	2 cut(s)	17, 67
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	9, 24, 74
LpnPI	CCDG	3 cut(s)	44, 120, 269
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	54, 140
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	6 cut(s)	61, 83, 88, 91, 280, 283
MseI	TTAA	2 cut(s)	209, 261
MslI	CAYNNNNRTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	132, 178
NmuCI	GTSAC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	209, 261
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	48
SetI	ASST	2 cut(s)	231, 250
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	27, 59, 234
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	54, 140
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	209, 261
Tru9I	TTAA	2 cut(s)	209, 261
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	2 cut(s)	54, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.